Zswim9

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain mRNA stability Zswim9 0.04 0.03 5.0e-04 0.04 0.04 0.02 0.03 1.5e-04 2.0e-04 2.4e-03 3.8e-04
2 Adipose gene expression Zswim9 0.06 0.05 2.5e-05 0.05 0.04 0.03 0.04 1.9e-06 8.2e-05 9.2e-05 2.3e-05
3 NAcc gene expression Zswim9 0.02 0.02 6.7e-03 0.01 0.01 0.01 0.01 7.3e-03 2.0e-02 1.7e-02 9.7e-03
4 pVTA gene expression Zswim9 0.09 0.07 2.9e-03 0.05 0.05 0.05 0.06 2.6e-03 3.5e-03 3.7e-03 1.3e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.20.30.40.40.4-0.60.7
Area under the delay curve1.41.52.20.91.11.3-1.5
BMI with tail0.72.33.9-1.0-1.12.0-1.8
BMI without tail1.53.13.7-1.6-1.71.7-1.9
Body weight0.93.67.3-2.6-2.70.20.0
Weight adjusted by age1.61.82.5-1.3-1.5-1.60.8
Bone surface2.23.97.1-1.3-1.2-2.32.7
Bone volume1.62.76.1-0.8-0.7-1.92.5
Breakpoint value in progressive ratio session6.06.68.02.82.82.1-2.5
Number of licking bursts1.01.22.3-1.5-1.50.3-0.2
Context. condit. distance diff. score0.10.10.2-0.4-0.4-0.2-0.1
Locomotion velocity, session 10.30.30.80.40.4-0.90.5
Locomotion distance, session 11.41.94.4-0.7-0.7-2.11.4
Locomotion velocity, session 20.80.91.6-1.3-1.2-0.60.4
Locomotion distance, session 22.12.93.3-1.8-1.8-1.61.5
Locomotion velocity, session 30.10.10.2-0.4-0.4-0.10.3
Locomotion distance, session 31.01.12.7-0.3-0.3-1.61.3
Stereotopy head waving bouts, day 30.60.71.50.20.21.2-1.2
Stereotopy head waving duration, day 30.70.81.70.50.61.3-1.1
Locomotion velocity, session 70.60.71.01.01.0-0.40.7
Locomotion distance, session 70.00.10.10.20.2-0.30.2
Stereotopy head waving bouts, day 70.30.40.7-0.6-0.5-0.40.8
Stereotopy head waving duration, day 70.20.30.4-0.7-0.6-0.20.6
Locomotion velocity, session 80.00.00.2-0.0-0.1-0.40.0
Locomotion distance, session 80.60.81.0-1.0-1.0-1.00.7
Degree of sensitization distance0.40.40.80.40.40.9-0.8
Degree of sensitization stereotypy1.11.21.8-1.3-1.3-0.70.9
Conditioned locomotion0.20.20.5-0.4-0.30.1-0.7
Cocaine response after cond. corrected0.70.82.50.50.51.6-0.4
Cocaine response after cond. not corrected0.40.40.7-0.7-0.70.10.8
Cocaine response before conditioning6.47.89.2-2.8-2.9-3.02.4
Saline control response1.41.82.5-1.6-1.6-1.30.7
Bone: connectivity density0.10.10.30.10.2-0.60.3
Bone: cortical apparent density0.40.51.00.70.71.0-0.3
Bone: cortical area0.71.11.6-1.3-1.2-0.90.7
Bone: cortical porosity0.40.41.10.40.51.1-0.5
Bone: cortical porosity0.20.20.7-0.2-0.20.8-0.2
Bone: cortical thickness0.40.61.20.50.50.9-1.1
Bone: cortical thickness0.30.30.4-0.6-0.6-0.40.6
Bone: cortical tissue density0.40.51.00.70.71.0-0.2
Condit. Reinf. active minus inactive responses0.40.40.5-0.7-0.70.6-0.4
Condit. Reinf. active-inactive response ratio0.80.81.5-0.6-0.61.2-1.1
Condit. Reinf. active responses0.30.40.7-0.8-0.8-0.10.4
Condit. Reinf. inactive responses1.31.53.3-0.4-0.3-1.61.8
Incentive salience index mean0.40.51.0-1.0-1.00.00.0
Condit. Reinf. lever presses0.30.50.7-0.9-0.8-0.50.3
Condit. Reinf. active minus inactive responses2.63.25.5-1.0-1.0-2.42.3
Condit. Reinf. active-inactive response ratio2.82.95.7-1.0-1.0-2.02.4
Condit. Reinf. active responses2.33.26.1-1.0-0.9-2.52.2
Condit. Reinf. inactive responses0.10.10.60.10.1-0.70.1
Condit. Reinf. lever presses0.60.81.4-1.1-1.2-0.70.2
Condit. Reinf. lever reinforcers received3.04.27.6-1.2-1.2-2.82.5
Conditioned reinforcement - actives0.50.51.3-0.4-0.61.1-0.1
Conditioned reinforcement - inactives2.32.63.6-1.9-1.9-1.21.4
Conditioned locomotion0.20.20.9-0.2-0.10.9-0.1
Patch foraging indifference point 0 sec0.40.61.90.20.10.6-1.4
Patch foraging indifference point AUC1.31.52.7-1.7-1.60.6-0.7
Delay disc. indifference point, 0s delay0.50.62.2-0.50.1-1.5-0.0
Delay disc. indifference point, 16s delay2.22.23.71.41.51.9-0.9
Delay disc. indifference point, 2s delay0.40.40.60.50.60.8-0.7
Delay disc. indifference point, 24s delay0.90.91.90.50.51.4-1.1
Delay disc. indifference point, 4s delay0.20.20.4-0.6-0.5-0.40.3
Delay disc. indifference point, 8s delay1.41.51.91.11.21.1-1.4
Indifference point function ln k2.33.27.50.60.6-2.72.1
Indifference point function log k2.33.27.50.60.6-2.72.1
Patch foraging total patch changes 0 sec0.40.72.20.20.10.7-1.5
Patch foraging total patch changes 12 sec0.70.91.3-0.8-0.80.8-1.2
Patch foraging total patch changes 18 sec1.01.21.9-1.2-1.40.4-1.2
Patch foraging total patch changes 24 sec0.70.81.5-1.2-1.20.30.1
Patch foraging total patch changes 6 sec0.81.12.1-0.4-0.41.4-1.5
Patch foraging time to switch 0 sec4.46.78.52.92.82.9-1.6
Patch foraging water rate 0 sec2.03.25.3-2.3-2.2-1.40.8
Patch foraging water rate 12 sec0.91.43.9-0.8-0.7-2.00.8
Patch foraging water rate 18 sec0.20.31.0-0.1-0.0-1.00.4
Patch foraging water rate 24 sec0.50.82.0-0.2-0.2-1.41.0
Patch foraging water rate 6 sec5.98.59.8-3.1-3.0-2.82.7
Seeking ratio, delayed vs. immediate footshock0.50.61.20.90.5-1.1-0.4
Distance traveled before self-admin0.70.72.0-0.2-0.5-1.40.8
Distance traveled after self-admin0.90.92.70.90.6-1.60.1
Extensor digitorum longus weight0.93.66.9-2.6-2.6-0.50.5
Bone: elastic displacement2.12.34.02.02.00.7-1.0
Bone: elastic work0.10.10.20.30.3-0.50.1
Bone: endosteal estimation2.45.29.3-1.5-1.5-2.73.0
Bone: endosteal perimeter1.53.04.7-1.3-1.2-2.22.1
Epididymis fat weight1.12.63.21.81.71.7-1.3
Delta time in closed arm before/after self-admin0.20.20.3-0.4-0.6-0.3-0.1
Delta time in open arm before/after self-admin0.30.30.4-0.6-0.6-0.40.4
Diff in mean of infusions in LGA sessions1.31.42.41.61.50.3-0.9
Delay discount exponential model param1.31.42.2-0.8-1.0-1.31.5
Extinction: sum of active levers before priming0.40.40.70.80.7-0.4-0.5
Active lever presses in extinction session 60.50.51.3-0.4-0.61.1-0.3
Bone: final force1.72.83.1-1.7-1.7-1.51.8
Bone: final moment2.23.53.9-1.9-1.9-1.82.0
Food consumed during 24 hour testing period1.11.42.51.61.6-0.40.5
Glucose1.42.03.31.81.80.6-1.1
Heart weight0.60.91.3-1.2-1.1-0.90.3
Delay discount hyperbolic model param0.70.81.5-0.5-0.7-1.01.2
Intermittent access intake day 1-15 change0.20.20.5-0.7-0.5-0.20.3
Intermittent access intake escalation0.10.10.2-0.4-0.20.10.2
Intermittent access intake escalation 20.20.20.3-0.5-0.5-0.50.4
Intermitt. access day 1 inactive lever presses0.40.41.0-0.5-0.60.01.0
Intermitt. access day 15 inactive lever presses2.22.43.8-1.8-2.0-0.51.4
Intermitt. access escalation Index1.21.12.20.40.51.3-1.5
Intermittent access day 1 total infusions0.30.40.8-0.5-0.9-0.30.6
Intermittent access day 15 total infusions0.10.10.2-0.2-0.30.50.2
Intermittent access terminal intake (last 3 days)0.10.10.3-0.3-0.30.10.6
Intermittent access total infusions0.30.30.5-0.5-0.7-0.00.7
Intermittent access day 1 locomotion0.20.20.40.60.5-0.20.5
Intermittent access day 15 total locomotion0.30.30.40.60.60.5-0.2
Intermittent access total locomotion0.20.20.50.30.1-0.30.7
Intermittent access standard deviation0.50.62.0-0.10.01.4-0.5
Left kidney weight6.819.031.6-5.6-5.6-2.52.6
Right kidney weight3.810.518.3-4.3-4.2-1.51.9
Cocaine induced anxiety1.11.33.20.20.1-1.81.4
Post-drug Anxiety0.40.41.4-0.1-0.3-0.51.2
Baseline Anxiety0.50.51.60.40.31.3-0.3
Tail length0.61.83.4-1.8-1.8-0.80.2
Length with tail1.34.75.4-2.3-2.3-2.02.1
Length without tail1.12.33.6-1.3-1.3-1.51.9
Times rat made contact with spout0.30.40.50.70.70.1-0.7
Lifetime Intake0.20.20.5-0.4-0.70.10.3
Liver weight, left5.69.017.7-4.2-4.20.70.3
Liver weight, right1.32.24.2-2.1-2.10.6-0.2
Locomotor activity0.71.12.2-1.4-1.50.3-0.4
Locomotor testing distance0.40.61.2-1.0-1.1-0.20.3
Locomotor testing rearing4.06.111.3-3.3-3.4-1.11.1
Locomotion in novel chamber2.63.35.62.42.21.0-1.3
Locomotion in novel chamber post-restriction0.60.81.11.00.80.5-1.0
Fecal boli incidents, locomotor time 10.20.30.5-0.70.2-0.60.4
Change in fecal boli incidents, locomotor task2.42.33.61.91.11.4-1.6
Time >=10cm from walls, locomotor time 10.50.50.80.30.70.9-0.8
Bouts of movement, locomotor time 10.50.51.10.51.0-0.9-0.2
Total resting periods, locomotor time 11.01.12.91.21.7-0.4-0.3
Rest time, locomotor task time 11.71.83.9-0.30.6-1.72.0
Distance moved, locomotor task time 10.70.71.40.0-0.71.0-1.2
Vertical activity count, locomotor time 11.21.33.80.3-0.31.0-1.9
Time >=10cm from walls, locomotor time 20.50.50.80.50.50.9-0.7
Bouts of movement, locomotor time 21.21.32.91.51.7-0.5-0.1
Total resting periods, locomotor time 21.41.53.11.61.8-0.8-0.0
Rest time, locomotor task time 20.70.81.80.91.4-0.90.1
Distance moved, locomotor task time 20.70.82.0-1.1-1.40.1-0.2
Vertical activity count, locomotor time 20.70.71.4-1.2-1.00.1-0.7
Light reinforcement 10.40.81.1-1.0-1.1-0.90.1
Light reinforcement 20.40.50.7-0.6-0.70.8-0.6
Bone: marrow area2.55.59.6-1.6-1.5-2.83.1
Bone: maximum diameter2.03.86.5-2.6-2.5-1.11.0
Bone: maximum force1.52.63.6-1.5-1.5-1.61.9
Bone: maximum moment1.93.34.3-1.7-1.6-1.92.1
Mean time between licks in bursts0.30.40.90.20.20.8-0.9
Mean num. licks in bursts1.51.83.71.91.9-0.3-0.0
Cd content in liver0.10.10.5-0.0-0.0-0.70.2
Co content in liver0.50.61.11.01.1-0.00.1
Cu content in liver0.81.01.3-1.1-1.0-0.81.1
Fe content in liver0.20.30.5-0.7-0.70.00.2
K content in liver1.21.22.2-1.5-1.5-0.40.3
Mg content in liver0.60.61.1-1.1-1.10.4-0.3
Mn content in liver0.50.60.7-0.8-0.80.8-0.5
Na content in liver0.60.71.30.40.41.0-1.2
Rb content in liver0.50.60.8-0.9-0.9-0.60.8
Se content in liver2.53.13.3-1.8-1.81.7-1.7
Sr content in liver3.12.87.00.80.81.7-2.6
Zn content in liver0.30.30.6-0.5-0.60.8-0.3
Bone: minimum diameter2.85.37.8-1.9-1.9-2.82.5
Time in familiar zone, hab. session 12.12.04.4-0.7-0.7-2.11.6
Time in novel zone, hab. session 10.80.82.4-0.4-0.41.5-0.7
Total zone transitions, hab. session 11.52.03.7-1.0-1.0-1.91.6
Total locomotion distance, hab. session 10.20.31.30.10.1-1.10.2
Locomotion velocity, hab. session 10.30.50.80.70.7-0.90.1
Time in familiar zone, hab. session 20.70.81.9-0.2-0.2-1.01.4
Time in novel zone, hab. session 20.30.30.7-0.1-0.10.9-0.8
Total zone transitions, hab. session 22.43.15.1-1.6-1.6-2.31.5
Total locomotion distance, hab. session 20.20.20.50.40.4-0.7-0.3
Locomotion velocity, hab. session 20.10.20.40.30.3-0.6-0.4
Novel to familiar place preference ratio0.40.40.8-0.9-0.9-0.2-0.1
Novelty place preference0.40.50.8-0.9-0.9-0.40.2
Time in novel zone, NPP test0.50.50.9-0.9-0.9-0.40.3
Total zone transitions, NPP test0.30.50.8-0.9-0.9-0.60.1
Total locomotion distance, NPP test0.10.20.4-0.4-0.4-0.1-0.6
Locomotion velocity, NPP test0.20.20.3-0.5-0.5-0.4-0.5
Intraocular pressure0.10.20.40.10.1-0.70.6
Delta distance traveled before/after self-admin0.60.61.00.90.80.1-1.0
Delta ambulatory time before/after self-admin0.60.71.10.90.90.1-1.1
Parametrial fat weight4.28.111.82.22.13.4-3.4
Pavlov. Cond. lever latency0.40.51.01.01.00.00.3
Pavlov. Cond. magazine entry latency0.60.81.0-0.9-0.90.6-1.0
Pavlov. Cond. change in total contacts0.10.10.40.10.10.2-0.7
Pavlov. Cond. index score0.70.91.4-1.2-1.20.4-0.9
Pavlov. Cond. latency score0.50.61.0-0.8-0.80.5-1.0
Pavlov. Cond. lever contacts0.60.71.3-1.1-1.10.1-0.4
Pavlov. Cond. magazine entry number0.50.61.01.01.0-0.10.6
Pavlov. Cond. intertrial magazine entries0.20.30.40.40.4-0.60.6
Pavlov. Cond. lever-magazine prob. diff.0.81.01.7-1.3-1.30.4-0.8
Pavlov. Cond. response bias1.51.93.6-1.9-1.90.2-0.4
Pavlov. Cond. lever latency0.30.51.50.10.2-0.51.2
Pavlov. Cond. magazine entry latency0.60.72.00.40.30.8-1.4
Pavlov. Cond. change in total contacts0.20.31.30.10.1-1.10.2
Pavlov. Cond. index score0.10.20.6-0.1-0.20.1-0.8
Pavlov. Cond. latency score0.30.41.40.30.20.4-1.2
Pavlov. Cond. lever contacts0.20.30.5-0.7-0.7-0.2-0.6
Pavlov. Cond. magazine entry number0.30.40.6-0.6-0.6-0.30.8
Pavlov. Cond. intertrial magazine entries2.93.77.0-1.1-1.1-2.32.7
Pavlov. Cond. lever-magazine prob. diff.0.10.20.4-0.3-0.4-0.0-0.7
Pavlov. Cond. response bias0.30.40.6-0.7-0.7-0.80.2
Time in closed arm before self-admin0.10.10.1-0.4-0.30.30.3
Time in closed arm after self-admin0.00.00.0-0.0-0.20.00.1
Time in open arm before self-admin0.10.10.40.10.1-0.7-0.0
Time in open arm after self-admin0.00.00.1-0.1-0.1-0.2-0.0
Bone: periosteal estimation2.14.46.1-1.8-1.8-2.32.5
Bone: periosteal perimeter2.33.95.2-1.6-1.6-2.32.3
Bone: post-yield work1.52.04.7-0.8-0.8-1.52.2
Progressive ratio test 1 active lever presses1.31.42.1-0.9-0.9-1.51.3
Progressive ratio test 1 breakpoint1.11.11.8-0.8-0.8-1.31.2
Progressive ratio test 1 inactive lever presses3.43.74.6-1.9-2.1-1.71.9
Progressive ratio test 2 active lever presses0.20.20.3-0.6-0.60.10.4
Progressive ratio test 2 breakpoint0.20.30.3-0.6-0.60.00.6
Progressive ratio test 2 inactive lever presses1.11.32.0-1.0-1.4-0.81.2
Incentive Sensitization - Responses0.40.41.1-0.6-0.5-0.11.0
Incentive Sensitization - Breakpoint0.30.30.7-0.5-0.40.10.8
Sum of active levers in priming session hrs 5-62.72.64.02.02.01.0-1.3
Progressive ratio0.30.30.50.50.4-0.7-0.5
Food seeking constrained by brief footshock1.11.34.10.50.5-2.0-0.7
Seeking ratio, punishment vs. effort0.10.20.5-0.10.1-0.70.3
Retroperitoneal fat weight4.213.720.02.92.74.4-4.5
Reaction time number correct1.21.73.3-1.8-1.8-0.4-0.5
Reaction time mean minus median0.20.20.50.70.70.10.2
Reaction time mean minus median AUC0.00.00.1-0.0-0.1-0.10.4
Reaction time num false alarms2.43.36.5-2.5-2.50.3-0.6
Reaction time num false alarms AUC1.92.75.1-2.2-2.30.2-0.9
Reaction time trials correct on left1.21.73.3-1.8-1.8-0.4-0.5
Reaction time trials on left1.21.83.4-1.8-1.8-0.4-0.5
Reaction time mean0.71.01.81.41.30.10.8
Reaction time mean AUC0.81.12.11.41.40.60.3
Median of all reaction times0.70.91.71.31.30.10.6
Reaction time omissions0.10.20.4-0.5-0.60.1-0.1
Reaction time false alarm rate0.30.40.6-0.7-0.80.5-0.6
Reaction time premature initiation rate1.41.93.81.91.90.1-0.3
Reaction time premature initiations0.40.61.01.01.00.0-0.6
Std. dev. reaction times0.40.50.91.00.90.30.4
Reaction time trials completed1.21.83.4-1.8-1.8-0.4-0.5
Reaction time trials AUC1.42.03.9-2.0-2.0-0.4-0.5
Run reversals in cocaine runway, females1.51.53.41.91.40.6-0.4
Run reversals in cocaine runway, males1.31.22.6-1.6-1.2-0.50.7
Latency to leave start box in cocaine runway0.20.20.50.70.50.20.1
Latency to leave start box in cocaine runway, F0.20.20.30.40.50.4-0.2
Latency to leave start box in cocaine runway, M0.40.40.8-0.4-0.7-0.50.9
Std. dev. time between licks in bursts0.50.61.2-1.1-1.1-0.40.0
Total sessions with >9 infusions2.52.73.8-1.9-2.0-1.01.5
Short access day 1 total inactive lever presses0.60.61.1-0.9-1.10.10.7
Short access day 10 total inactive lever presses0.60.71.71.30.8-0.20.6
Short access day 1 total infusions0.30.30.5-0.7-0.7-0.40.3
Short access day 10 total infusions0.60.71.7-0.9-1.30.50.1
Short access total infusions0.20.20.4-0.1-0.50.5-0.6
Short access day 1 locomotion0.60.71.4-0.9-0.5-0.51.2
Short access day 10 total locomotion0.50.51.11.00.9-0.30.3
Short access total locomotion0.20.20.30.60.50.0-0.4
One hour access (0.3 mA shock)0.30.41.40.0-0.1-0.51.2
Compulsive drug intake0.30.30.7-0.3-0.3-0.80.6
One hour access (shock baseline)0.40.50.6-0.7-0.80.70.6
Social response proportion0.40.40.9-0.9-0.90.30.1
Social responses2.33.04.2-2.0-1.9-1.11.6
Social time1.62.15.2-0.7-0.7-2.31.5
Soleus weight0.10.40.8-0.9-0.90.1-0.4
Bone: stiffness2.23.54.6-2.1-2.1-1.41.7
Tibialis anterior weight1.24.14.8-2.2-2.21.7-2.0
Time to tail flick, vehicle, before self-admin0.40.41.0-0.4-0.2-1.00.5
Time to tail flick, vehicle, after self-admin0.20.20.40.30.30.40.6
Time to tail flick, test, before self-admin1.00.93.70.00.3-1.90.1
Time to tail flick, test, after self-admin0.00.00.0-0.10.00.2-0.1
Delta time to tail flick, vehicle, before/after SA0.40.41.40.40.31.2-0.1
Delta time to tail flick, test, before/after SA0.60.52.10.20.01.4-0.1
Tibia length3.610.212.2-3.5-3.5-3.02.7
Ambulatory time before self-admin1.31.34.1-0.3-0.5-2.00.9
Ambulatory time after self-admin0.91.02.80.90.5-1.70.3
Bone: tissue strength0.20.20.80.20.20.0-0.9
Total heroin consumption1.11.32.41.10.71.1-1.5
Bone: trabecular number0.10.20.30.50.5-0.50.1
Bone: trabecular spacing0.10.10.1-0.3-0.30.3-0.3
Bone: trabecular thickness0.10.10.2-0.4-0.40.30.3
Bone: trabecular tissue density0.91.33.60.40.31.9-1.1
Water consumed over 24 hours0.40.51.20.20.2-1.10.8
Number of responses in last shaping day0.30.40.6-0.6-0.80.40.5