Hub : Traits

Time in familiar zone, hab. session 1

Time in familiar zone during first habituation session for males and females [sec]

Tags: Behavior · Motivation · Novelty

Project: p50_shelly_flagel_2014

0 loci · 0 genes with independent associations · 0 total associated genes

Significant Loci

#	Chr	Start pos	End pos	# assoc genes	# joint models	Best TWAS P	Best GWAS P	Cond GWAS P	Joint genes

Pleiotropic Associations

Trait	Chi2 ratio	# genes+	# genes++	% genes++	Corr	Corr P	Genes
Body weight	2.13	1	0	0	0	1e+00	Shld1
Length with tail	1.46	1	0	0	0	1e+00	Shld1
Liver weight, left	2.75	1	0	0	0	1e+00	Shld1
Extensor digitorum longus weight	1.39	1	0	0	0	1e+00	Shld1
Soleus weight	5.97	1	0	0	0	1e+00	Shld1
Tibialis anterior weight	2.39	1	0	0	0	1e+00	Shld1
Food consumed during 24 hour testing period	3.49	1	0	0	0	1e+00	Shld1
Mean time between licks in bursts	6.35	1	0	0	0	1e+00	Shld1
Std. dev. time between licks in bursts	5.83	1	0	0	0	1e+00	Shld1
Indifference point 0 sec	5.43	1	0	0	0	1e+00	Shld1
Indifference point AUC	5.85	1	0	0	0	1e+00	Shld1
Delay discounting total patch changes 0 sec	4.11	1	0	0	0	1e+00	Shld1
Delay discounting total patch changes 12 sec	8.32	1	0	0	0	1e+00	Shld1
Delay discounting total patch changes 6 sec	14.72	1	0	0	0	1e+00	Shld1
Locomotor activity	2.94	1	0	0	0	1e+00	Shld1
Light reinforcement 2	3.11	1	0	0	0	1e+00	Shld1
Reaction time num false alarms AUC	2.85	1	0	0	0	1e+00	Shld1
Reaction time false alarm rate	4.88	1	0	0	0	1e+00	Shld1
Reaction time premature initiations	2.81	1	0	0	0	1e+00	Shld1
Condit. Reinf. inactive responses	3.45	1	0	0	0	1e+00	Shld1
Pavlov. Cond. intertrial magazine entries	8.69	1	0	0	0	1e+00	Shld1
Intermitt. access day 1 inactive lever presses	4.34	1	0	0	0	1e+00	Shld1
Intermitt. access day 15 inactive lever presses	3.5	1	0	0	0	1e+00	Shld1
Short access day 10 total inactive lever presses	7.78	1	0	0	0	1e+00	Shld1
Locomotion velocity, session 3	4.04	1	0	0	0	1e+00	Shld1
Locomotion velocity, session 7	12.47	1	0	0	0	1e+00	Shld1
Condit. Reinf. inactive responses	7.45	1	0	0	0	1e+00	Shld1
Time in novel zone, hab. session 1	11.55	1	0	0	0	1e+00	Shld1
Total zone transitions, hab. session 1	5.19	1	0	0	0	1e+00	Shld1
Time in familiar zone, hab. session 2	36.15	1	1	Inf	0	1e+00	Shld1
Time in novel zone, hab. session 2	32.17	1	1	Inf	0	1e+00	Shld1
Pavlov. Cond. intertrial magazine entries	5.5	1	0	0	0	1e+00	Shld1
Bone surface	3.06	1	0	0	0	1e+00	Shld1
Bone volume	4.09	1	0	0	0	1e+00	Shld1
Bone: cortical apparent density	4.92	1	0	0	0	1e+00	Shld1
Bone: cortical area	4.37	1	0	0	0	1e+00	Shld1
Bone: cortical thickness	2.73	1	0	0	0	1e+00	Shld1
Bone: cortical tissue density	5.85	1	0	0	0	1e+00	Shld1
Bone: maximum diameter	6.96	1	0	0	0	1e+00	Shld1
Bone: minimum diameter	3.02	1	0	0	0	1e+00	Shld1
Bone: periosteal perimeter	2.64	1	0	0	0	1e+00	Shld1
Bone: trabecular thickness	4.66	1	0	0	0	1e+00	Shld1
Bone: trabecular tissue density	5.62	1	0	0	0	1e+00	Shld1
Time in open arm after self-admin	3.59	1	0	0	0	1e+00	Shld1
Delta time to tail flick, test, before/after SA	10.68	1	0	0	0	1e+00	Shld1
Delay disc. indifference point, 4s delay	6.37	1	0	0	0	1e+00	Shld1
Delay disc. indifference point, 8s delay	13.01	1	0	0	0	1e+00	Shld1
Distance moved, locomotor task time 1	4.43	1	0	0	0	1e+00	Shld1
Progressive ratio	11.7	1	0	0	0	1e+00	Shld1
Seeking ratio, punishment vs. effort	5.05	1	0	0	0	1e+00	Shld1
Run reversals in cocaine runway, males	4.66	1	0	0	0	1e+00	Shld1
Fe content in liver	3.57	1	0	0	0	1e+00	Shld1

Associations by panel

Tissue	RNA modality	# hits	% hits/tests	Avg chisq
Adipose	alternative polyA	0	0	1.01
Adipose	alternative TSS	0	0	1.01
Adipose	gene expression	0	0	0.94
Adipose	isoform ratio	0	0	0.95
Adipose	intron excision ratio	0	0	1.13
Adipose	mRNA stability	0	0	0.92
BLA	alternative polyA	0	0	0.89
BLA	alternative TSS	0	0	0.98
BLA	gene expression	0	0	0.91
BLA	isoform ratio	0	0	0.98
BLA	intron excision ratio	0	0	1.03
BLA	mRNA stability	0	0	0.9
Brain	alternative polyA	0	0	0.96
Brain	alternative TSS	0	0	0.92
Brain	gene expression	0	0	0.92
Brain	isoform ratio	0	0	0.99
Brain	intron excision ratio	0	0	0.99
Brain	mRNA stability	0	0	0.9
Eye	alternative polyA	0	0	1.12
Eye	alternative TSS	0	0	1
Eye	gene expression	0	0	0.91
Eye	isoform ratio	0	0	0.89
Eye	intron excision ratio	0	0	0.94
Eye	mRNA stability	0	0	0.82
IL	alternative polyA	0	0	0.94
IL	alternative TSS	0	0	0.91
IL	gene expression	0	0	0.9
IL	isoform ratio	0	0	0.92
IL	intron excision ratio	0	0	0.93
IL	mRNA stability	0	0	0.85
LHb	alternative polyA	0	0	1.01
LHb	alternative TSS	0	0	0.93
LHb	gene expression	0	0	0.92
LHb	isoform ratio	0	0	0.95
LHb	intron excision ratio	0	0	1.04
LHb	mRNA stability	0	0	0.96
Liver	alternative polyA	0	0	0.96
Liver	alternative TSS	0	0	0.93
Liver	gene expression	0	0	0.93
Liver	isoform ratio	0	0	1.02
Liver	intron excision ratio	1	0	0.99
Liver	mRNA stability	0	0	0.9
NAcc	alternative polyA	0	0	0.88
NAcc	alternative TSS	0	0	0.98
NAcc	gene expression	0	0	0.92
NAcc	isoform ratio	0	0	0.97
NAcc	intron excision ratio	0	0	0.96
NAcc	mRNA stability	0	0	0.87
OFC	alternative polyA	0	0	0.83
OFC	alternative TSS	0	0	1.31
OFC	gene expression	0	0	0.89
OFC	isoform ratio	0	0	1.01
OFC	intron excision ratio	0	0	1.11
OFC	mRNA stability	0	0	0.86
PL	alternative polyA	0	0	0.91
PL	alternative TSS	0	0	0.95
PL	gene expression	0	0	0.91
PL	isoform ratio	0	0	0.99
PL	intron excision ratio	0	0	1.03
PL	mRNA stability	0	0	0.91