Trials completed in which the rat responded correctly in the last three 18-minute sessions for males and females [n]
Project: p50_david_dietz
1 significantly associated model · 1 unique gene
| # | chr | p0 | p1 | # assoc genes | # joint models | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1 | 97168285 | 98018334 | 1 | 1 | 2.1e-07 | 7.6e-05 | 0.59 | 98 | Gtf2h1 |
p0: physical position of the start of the locus. p1: physical position of the end of the locus. # joint models: number of models selected by step-wise conditional analysis.
| Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
|---|---|---|---|---|---|---|---|
| retroperitoneal_fat_g | 1.4 | 1 | 0 | 0 | 0 | 1 | Gtf2h1 |
| dissection: UMAP 3 of all traits | 1.8 | 1 | 0 | 0 | 0 | 1 | Gtf2h1 |
| dissection: PC 3 of all traits | 2.2 | 1 | 0 | 0 | 0 | 1 | Gtf2h1 |
| dissection: PC 2 of all traits | 2.0 | 1 | 0 | 0 | 0 | 1 | Gtf2h1 |
| os_mean | 6.1 | 1 | 0 | 0 | 0 | 1 | Gtf2h1 |
| reaction_time_leftcorr | 18.7 | 1 | 1 | 100 | 0 | 1 | Gtf2h1 |
| delay_discounting_pc1800 | 3.1 | 1 | 0 | 0 | 0 | 1 | Gtf2h1 |
| pavca_mi_d1_prob_lev | 2.9 | 1 | 0 | 0 | 0 | 1 | Gtf2h1 |
| pavca_mi_d1_avg_lev_lat | 3.0 | 1 | 0 | 0 | 0 | 1 | Gtf2h1 |
| Trabecular tissue density | 3.5 | 1 | 0 | 0 | 0 | 1 | Gtf2h1 |
| tautz: manual_mpc12 | 5.0 | 1 | 0 | 0 | 0 | 1 | Gtf2h1 |
| tautz: manual_mpc13 | 3.1 | 1 | 0 | 0 | 0 | 1 | Gtf2h1 |
| tautz: manual_spc5 | 3.1 | 1 | 0 | 0 | 0 | 1 | Gtf2h1 |
| The total number of resting periods in time1 | 4.4 | 1 | 0 | 0 | 0 | 1 | Gtf2h1 |
| Weight adjusted by age | 8.0 | 1 | 0 | 0 | 0 | 1 | Gtf2h1 |
chisq ratio: Average Chi2 statistic for the selected genes in the secondary trait, divided by the average statistic for all genes in the secondary trait. # genes+: Shared significant genes at Bonferroni correction. # genes++: Shared significant genes at transcriptome-wide significance. % genes++: Number of [++] genes as a percentage of primary trait’s total joint genes. corr: Correlation of effect sizes across the [+] genes.
| tissue | modality | # hits | % hits/tests | avg chisq |
|---|---|---|---|---|
| Adipose | alternative polyA | 0 | 0.000 | 1.4 |
| Adipose | alternative TSS | 0 | 0.000 | 1.5 |
| Adipose | gene expression | 0 | 0.000 | 1.4 |
| Adipose | isoform ratio | 0 | 0.000 | 1.4 |
| Adipose | intron excision ratio | 0 | 0.000 | 1.4 |
| Adipose | mRNA stability | 0 | 0.000 | 1.4 |
| BLA | alternative polyA | 0 | 0.000 | 1.4 |
| BLA | alternative TSS | 0 | 0.000 | 1.4 |
| BLA | gene expression | 0 | 0.000 | 1.4 |
| BLA | isoform ratio | 0 | 0.000 | 1.4 |
| BLA | intron excision ratio | 0 | 0.000 | 1.4 |
| BLA | mRNA stability | 0 | 0.000 | 1.5 |
| Brain | alternative polyA | 0 | 0.000 | 1.5 |
| Brain | alternative TSS | 0 | 0.000 | 1.4 |
| Brain | gene expression | 0 | 0.000 | 1.4 |
| Brain | isoform ratio | 0 | 0.000 | 1.5 |
| Brain | intron excision ratio | 0 | 0.000 | 1.5 |
| Brain | mRNA stability | 0 | 0.000 | 1.4 |
| Eye | alternative polyA | 0 | 0.000 | 1.5 |
| Eye | alternative TSS | 0 | 0.000 | 1.0 |
| Eye | gene expression | 0 | 0.000 | 1.3 |
| Eye | isoform ratio | 0 | 0.000 | 1.3 |
| Eye | intron excision ratio | 0 | 0.000 | 1.4 |
| Eye | mRNA stability | 0 | 0.000 | 1.6 |
| IL | alternative polyA | 0 | 0.000 | 1.5 |
| IL | alternative TSS | 0 | 0.000 | 1.4 |
| IL | gene expression | 0 | 0.000 | 1.5 |
| IL | isoform ratio | 0 | 0.000 | 1.6 |
| IL | intron excision ratio | 0 | 0.000 | 1.5 |
| IL | mRNA stability | 0 | 0.000 | 1.6 |
| LHb | alternative polyA | 0 | 0.000 | 1.3 |
| LHb | alternative TSS | 0 | 0.000 | 1.5 |
| LHb | gene expression | 0 | 0.000 | 1.5 |
| LHb | isoform ratio | 0 | 0.000 | 1.4 |
| LHb | intron excision ratio | 0 | 0.000 | 1.5 |
| LHb | mRNA stability | 0 | 0.000 | 1.5 |
| Liver | alternative polyA | 0 | 0.000 | 1.4 |
| Liver | alternative TSS | 0 | 0.000 | 1.4 |
| Liver | gene expression | 0 | 0.000 | 1.4 |
| Liver | isoform ratio | 0 | 0.000 | 1.4 |
| Liver | intron excision ratio | 0 | 0.000 | 1.4 |
| Liver | mRNA stability | 0 | 0.000 | 1.4 |
| NAcc | alternative polyA | 0 | 0.000 | 1.6 |
| NAcc | alternative TSS | 0 | 0.000 | 1.5 |
| NAcc | gene expression | 0 | 0.000 | 1.5 |
| NAcc | isoform ratio | 0 | 0.000 | 1.4 |
| NAcc | intron excision ratio | 0 | 0.000 | 1.4 |
| NAcc | mRNA stability | 0 | 0.000 | 1.6 |
| NAcc2 | alternative polyA | 0 | 0.000 | 1.5 |
| NAcc2 | alternative TSS | 0 | 0.000 | 1.4 |
| NAcc2 | gene expression | 0 | 0.000 | 1.4 |
| NAcc2 | isoform ratio | 0 | 0.000 | 1.4 |
| NAcc2 | intron excision ratio | 0 | 0.000 | 1.4 |
| NAcc2 | mRNA stability | 0 | 0.000 | 1.5 |
| OFC | alternative polyA | 0 | 0.000 | 1.4 |
| OFC | alternative TSS | 0 | 0.000 | 1.5 |
| OFC | gene expression | 0 | 0.000 | 1.4 |
| OFC | isoform ratio | 0 | 0.000 | 1.5 |
| OFC | intron excision ratio | 0 | 0.000 | 1.3 |
| OFC | mRNA stability | 0 | 0.000 | 1.6 |
| PL | alternative polyA | 0 | 0.000 | 1.4 |
| PL | alternative TSS | 0 | 0.000 | 1.3 |
| PL | gene expression | 0 | 0.000 | 1.5 |
| PL | isoform ratio | 0 | 0.000 | 1.4 |
| PL | intron excision ratio | 0 | 0.000 | 1.4 |
| PL | mRNA stability | 1 | 0.087 | 1.6 |
| PL2 | alternative polyA | 0 | 0.000 | 1.6 |
| PL2 | alternative TSS | 0 | 0.000 | 1.5 |
| PL2 | gene expression | 0 | 0.000 | 1.4 |
| PL2 | isoform ratio | 0 | 0.000 | 1.5 |
| PL2 | intron excision ratio | 0 | 0.000 | 1.5 |
| PL2 | mRNA stability | 0 | 0.000 | 1.5 |
avg chisq: Average Chi2 (squared Z-score) across all models in this panel for this trait.