Hub : Traits

Bone: trabecular tissue density

Tags: Physiology · Bone

Project: r01_doug_adams

4 loci · 4 genes with independent associations · 4 total associated genes

Significant Loci

#	Chr	Start pos	End pos	# assoc genes	# joint models	Best TWAS P	Best GWAS P	Cond GWAS P	Joint genes
1	chr3	107934079	108540443	1	1	1.48e-07	3.00e-01	6.56e-37	Prr5l
2	chr7	92127461	93066096	1	1	6.61e-09	1.65e-01	1.00e+00	Ndufb9
3	chr8	117463629	118343328	1	1	5.61e-09	4.90e-01	1.00e+00	Mst1
4	chr9	83390749	84777604	1	1	0.00e+00	2.61e-01	1.00e+00	Retreg2

Pleiotropic Associations

Trait	Chi2 ratio	# genes+	# genes++	% genes++	Corr	Corr P	Genes
BMI with tail	294.61	3	2	50	0	1.00e+00	Ndufb9 Prr5l Retreg2
BMI without tail	19088.84	3	2	50	0	1.00e+00	Ndufb9 Prr5l Retreg2
Body weight	8.28	4	3	75	0.38	6.21e-01	Mst1 Ndufb9 Prr5l Retreg2
Epididymis fat weight	12102.23	3	2	50	0	1.00e+00	Mst1 Ndufb9 Retreg2
Glucose	226.07	3	2	50	0	1.00e+00	Mst1 Ndufb9 Retreg2
Heart weight	1536.76	2	1	25	0	1.00e+00	Ndufb9 Retreg2
Left kidney weight	18353.63	3	2	50	0	1.00e+00	Ndufb9 Prr5l Retreg2
Right kidney weight	13476.76	3	3	75	0	1.00e+00	Mst1 Ndufb9 Retreg2
Tail length	9640.98	3	1	25	0	1.00e+00	Mst1 Ndufb9 Retreg2
Length with tail	501.6	3	3	75	0	1.00e+00	Mst1 Ndufb9 Retreg2
Length without tail	15751.67	3	2	50	0	1.00e+00	Mst1 Ndufb9 Retreg2
Liver weight, left	1172.72	3	2	50	0	1.00e+00	Mst1 Ndufb9 Retreg2
Liver weight, right	24.86	4	2	50	-0.56	4.43e-01	Mst1 Ndufb9 Prr5l Retreg2
Parametrial fat weight	92.2	2	1	25	0	1.00e+00	Prr5l Retreg2
Retroperitoneal fat weight	1985.63	2	2	50	0	1.00e+00	Mst1 Retreg2
Intraocular pressure	5195.51	2	1	25	0	1.00e+00	Ndufb9 Retreg2
Extensor digitorum longus weight	541.05	2	1	25	0	1.00e+00	Mst1 Retreg2
Soleus weight	7.55	4	1	25	1	3.40e-03	Mst1 Ndufb9 Prr5l Retreg2
Tibialis anterior weight	391.03	3	2	50	0	1.00e+00	Mst1 Prr5l Retreg2
Tibia length	203.62	4	3	75	0.98	2.06e-02	Mst1 Ndufb9 Prr5l Retreg2
Number of licking bursts	67424.86	1	1	25	0	1.00e+00	Retreg2
Food consumed during 24 hour testing period	17761.06	2	1	25	0	1.00e+00	Mst1 Retreg2
Times rat made contact with spout	41.61	2	1	25	0	1.00e+00	Ndufb9 Retreg2
Mean time between licks in bursts	55817.09	2	1	25	0	1.00e+00	Ndufb9 Retreg2
Mean num. licks in bursts	56750.08	1	1	25	0	1.00e+00	Retreg2
Std. dev. time between licks in bursts	14881.26	2	1	25	0	1.00e+00	Mst1 Retreg2
Water consumed over 24 hours	11395.6	3	1	25	0	1.00e+00	Mst1 Prr5l Retreg2
Patch foraging indifference point 0 sec	13062.96	3	1	25	0	1.00e+00	Mst1 Prr5l Retreg2
Patch foraging indifference point AUC	12564.93	4	2	50	-1	1.48e-03	Mst1 Ndufb9 Prr5l Retreg2
Indifference point function ln k	18623.38	3	3	75	0	1.00e+00	Mst1 Ndufb9 Retreg2
Indifference point function log k	18623.38	3	3	75	0	1.00e+00	Mst1 Ndufb9 Retreg2
Patch foraging total patch changes 0 sec	13987.25	3	1	25	0	1.00e+00	Mst1 Prr5l Retreg2
Patch foraging total patch changes 12 sec	607.33	4	3	75	0.98	2.08e-02	Mst1 Ndufb9 Prr5l Retreg2
Patch foraging total patch changes 18 sec	13495.16	3	2	50	0	1.00e+00	Mst1 Ndufb9 Retreg2
Patch foraging total patch changes 24 sec	24981.36	3	3	75	0	1.00e+00	Mst1 Ndufb9 Retreg2
Patch foraging total patch changes 6 sec	1955.56	4	2	50	1	2.44e-03	Mst1 Ndufb9 Prr5l Retreg2
Patch foraging time to switch 0 sec	16637.31	4	3	75	1	9.52e-05	Mst1 Ndufb9 Prr5l Retreg2
Patch foraging water rate 0 sec	20150.86	3	2	50	0	1.00e+00	Ndufb9 Prr5l Retreg2
Patch foraging water rate 12 sec	35322.91	2	1	25	0	1.00e+00	Mst1 Retreg2
Patch foraging water rate 18 sec	8438.77	4	1	25	-1	6.15e-05	Mst1 Ndufb9 Prr5l Retreg2
Patch foraging water rate 24 sec	523.92	2	1	25	0	1.00e+00	Mst1 Retreg2
Patch foraging water rate 6 sec	435.09	2	2	50	0	1.00e+00	Ndufb9 Retreg2
Locomotor activity	15.46	2	1	25	0	1.00e+00	Mst1 Ndufb9
Locomotor testing distance	9234.88	3	2	50	0	1.00e+00	Mst1 Ndufb9 Retreg2
Locomotor testing rearing	21145.02	3	2	50	0	1.00e+00	Mst1 Ndufb9 Retreg2
Light reinforcement 1	33157.44	2	1	25	0	1.00e+00	Mst1 Retreg2
Light reinforcement 2	12266.98	3	2	50	0	1.00e+00	Mst1 Ndufb9 Retreg2
Reaction time number correct	31744.5	2	2	50	0	1.00e+00	Ndufb9 Retreg2
Reaction time mean minus median	39986.09	3	1	25	0	1.00e+00	Mst1 Ndufb9 Retreg2
Reaction time mean minus median AUC	41341.25	3	3	75	0	1.00e+00	Mst1 Ndufb9 Retreg2
Reaction time num false alarms	7685.9	2	1	25	0	1.00e+00	Mst1 Retreg2
Reaction time num false alarms AUC	17513.8	2	1	25	0	1.00e+00	Mst1 Retreg2
Reaction time trials correct on left	31744.5	2	2	50	0	1.00e+00	Ndufb9 Retreg2
Reaction time trials on left	30449.82	2	2	50	0	1.00e+00	Ndufb9 Retreg2
Reaction time mean	29724.21	1	1	25	0	1.00e+00	Retreg2
Reaction time mean AUC	38768	1	1	25	0	1.00e+00	Retreg2
Median of all reaction times	3950.5	2	1	25	0	1.00e+00	Prr5l Retreg2
Reaction time omissions	2792.39	3	1	25	0	1.00e+00	Mst1 Ndufb9 Retreg2
Reaction time false alarm rate	76.38	3	1	25	0	1.00e+00	Mst1 Ndufb9 Retreg2
Reaction time premature initiation rate	9733.76	1	1	25	0	1.00e+00	Retreg2
Reaction time premature initiations	53743.58	1	1	25	0	1.00e+00	Retreg2
Std. dev. reaction times	20293.6	3	1	25	0	1.00e+00	Mst1 Ndufb9 Retreg2
Reaction time trials completed	30449.82	2	2	50	0	1.00e+00	Ndufb9 Retreg2
Reaction time trials AUC	31071.82	2	1	25	0	1.00e+00	Ndufb9 Retreg2
Social response proportion	4397.95	2	1	25	0	1.00e+00	Mst1 Retreg2
Social responses	326.82	4	1	25	-1	1.27e-03	Mst1 Ndufb9 Prr5l Retreg2
Social time	3890.1	3	1	25	0	1.00e+00	Mst1 Prr5l Retreg2
Conditioned locomotion	1400.08	1	1	25	0	1.00e+00	Retreg2
Cocaine response after cond. corrected	19128.47	1	1	25	0	1.00e+00	Retreg2
Cocaine response after cond. not corrected	18571.31	1	1	25	0	1.00e+00	Retreg2
Cocaine response before conditioning	655.41	1	1	25	0	1.00e+00	Retreg2
Saline control response	1639.18	2	2	50	0	1.00e+00	Mst1 Retreg2
Condit. Reinf. active minus inactive responses	7271.32	2	2	50	0	1.00e+00	Mst1 Retreg2
Condit. Reinf. active-inactive response ratio	14360.59	2	1	25	0	1.00e+00	Ndufb9 Retreg2
Condit. Reinf. active responses	1165.18	2	2	50	0	1.00e+00	Mst1 Retreg2
Condit. Reinf. inactive responses	5466.41	2	2	50	0	1.00e+00	Mst1 Retreg2
Condit. Reinf. lever presses	1311.07	3	2	50	0	1.00e+00	Mst1 Ndufb9 Retreg2
Condit. Reinf. lever reinforcers received	243.91	2	1	25	0	1.00e+00	Mst1 Retreg2
Pavlov. Cond. lever latency	856.84	3	2	50	0	1.00e+00	Mst1 Prr5l Retreg2
Pavlov. Cond. magazine entry latency	6738.25	2	2	50	0	1.00e+00	Mst1 Retreg2
Pavlov. Cond. change in total contacts	19909.31	2	1	25	0	1.00e+00	Ndufb9 Retreg2
Pavlov. Cond. index score	6407.33	2	2	50	0	1.00e+00	Mst1 Retreg2
Pavlov. Cond. latency score	5408.33	3	2	50	0	1.00e+00	Mst1 Prr5l Retreg2
Pavlov. Cond. lever contacts	1797.66	3	2	50	0	1.00e+00	Mst1 Prr5l Retreg2
Pavlov. Cond. magazine entry number	2097.69	2	2	50	0	1.00e+00	Mst1 Retreg2
Pavlov. Cond. intertrial magazine entries	11707.75	3	2	50	0	1.00e+00	Mst1 Prr5l Retreg2
Pavlov. Cond. lever-magazine prob. diff.	5938.34	2	2	50	0	1.00e+00	Mst1 Retreg2
Pavlov. Cond. response bias	429.76	3	2	50	0	1.00e+00	Mst1 Prr5l Retreg2
Conditioned reinforcement - actives	50420.83	2	2	50	0	1.00e+00	Ndufb9 Retreg2
Conditioned reinforcement - inactives	21684.99	3	3	75	0	1.00e+00	Mst1 Ndufb9 Retreg2
Conditioned locomotion	2605.7	4	2	50	1	4.32e-03	Mst1 Ndufb9 Prr5l Retreg2
Intermittent access intake day 1-15 change	63945.95	2	2	50	0	1.00e+00	Mst1 Retreg2
Intermittent access intake escalation	63041.23	2	2	50	0	1.00e+00	Mst1 Retreg2
Intermittent access intake escalation 2	18091.79	2	1	25	0	1.00e+00	Mst1 Retreg2
Intermitt. access day 1 inactive lever presses	60230.5	3	2	50	0	1.00e+00	Mst1 Ndufb9 Retreg2
Intermitt. access day 15 inactive lever presses	61868.22	2	2	50	0	1.00e+00	Ndufb9 Retreg2
Intermitt. access escalation Index	31137.19	3	2	50	0	1.00e+00	Mst1 Ndufb9 Retreg2
Intermittent access day 1 total infusions	33063.01	2	1	25	0	1.00e+00	Mst1 Retreg2
Intermittent access day 15 total infusions	48731.91	1	1	25	0	1.00e+00	Retreg2
Intermittent access terminal intake (last 3 days)	24800.59	1	1	25	0	1.00e+00	Retreg2
Intermittent access total infusions	181.04	1	1	25	0	1.00e+00	Retreg2
Intermittent access day 1 locomotion	34964.22	1	1	25	0	1.00e+00	Retreg2
Intermittent access day 15 total locomotion	85548.8	1	1	25	0	1.00e+00	Retreg2
Intermittent access total locomotion	45.91	3	1	25	0	1.00e+00	Mst1 Ndufb9 Retreg2
Intermittent access standard deviation	37998.46	3	2	50	0	1.00e+00	Mst1 Prr5l Retreg2
Cocaine induced anxiety	34589.88	2	2	50	0	1.00e+00	Ndufb9 Retreg2
Post-drug Anxiety	1199.09	4	2	50	-1	6.31e-04	Mst1 Ndufb9 Prr5l Retreg2
Baseline Anxiety	16852.64	2	2	50	0	1.00e+00	Ndufb9 Retreg2
Lifetime Intake	1655.49	1	1	25	0	1.00e+00	Retreg2
Incentive Sensitization - Responses	35692.61	2	2	50	0	1.00e+00	Ndufb9 Retreg2
Incentive Sensitization - Breakpoint	27649.77	2	2	50	0	1.00e+00	Ndufb9 Retreg2
Progressive ratio test 1 active lever presses	15996.07	2	1	25	0	1.00e+00	Ndufb9 Retreg2
Progressive ratio test 1 breakpoint	15154.62	2	1	25	0	1.00e+00	Ndufb9 Retreg2
Progressive ratio test 1 inactive lever presses	20756.82	3	3	75	0	1.00e+00	Mst1 Ndufb9 Retreg2
Progressive ratio test 2 active lever presses	7635.38	2	1	25	0	1.00e+00	Ndufb9 Retreg2
Progressive ratio test 2 breakpoint	4274.2	2	1	25	0	1.00e+00	Ndufb9 Retreg2
Progressive ratio test 2 inactive lever presses	24171.65	3	1	25	0	1.00e+00	Mst1 Ndufb9 Retreg2
Total sessions with >9 infusions	674.01	3	2	50	0	1.00e+00	Mst1 Prr5l Retreg2
Short access day 1 total inactive lever presses	9886.29	4	3	75	-1	2.01e-03	Mst1 Ndufb9 Prr5l Retreg2
Short access day 10 total inactive lever presses	46303.26	3	2	50	0	1.00e+00	Mst1 Prr5l Retreg2
Short access day 1 total infusions	19198	2	1	25	0	1.00e+00	Mst1 Retreg2
Short access day 10 total infusions	5691.04	4	3	75	-1	1.82e-03	Mst1 Ndufb9 Prr5l Retreg2
Short access total infusions	8778.92	1	1	25	0	1.00e+00	Retreg2
Short access day 1 locomotion	6216.12	4	2	50	1	1.76e-03	Mst1 Ndufb9 Prr5l Retreg2
Short access day 10 total locomotion	44094.34	2	1	25	0	1.00e+00	Mst1 Retreg2
Short access total locomotion	4683.37	4	2	50	1	1.48e-03	Mst1 Ndufb9 Prr5l Retreg2
Compulsive drug intake	6234.79	3	1	25	0	1.00e+00	Mst1 Ndufb9 Retreg2
One hour access (0.3 mA shock)	1167.82	2	1	25	0	1.00e+00	Ndufb9 Retreg2
One hour access (shock baseline)	54988.81	1	1	25	0	1.00e+00	Retreg2
Number of responses in last shaping day	4551.14	3	2	50	0	1.00e+00	Mst1 Prr5l Retreg2
Context. condit. distance diff. score	212.47	1	1	25	0	1.00e+00	Retreg2
Locomotion velocity, session 1	1769.63	2	1	25	0	1.00e+00	Ndufb9 Retreg2
Locomotion distance, session 1	1024.77	1	1	25	0	1.00e+00	Retreg2
Locomotion velocity, session 2	1110.36	2	2	50	0	1.00e+00	Mst1 Retreg2
Locomotion distance, session 2	258.11	2	1	25	0	1.00e+00	Mst1 Retreg2
Locomotion velocity, session 3	264.95	2	1	25	0	1.00e+00	Prr5l Retreg2
Locomotion distance, session 3	4009.46	1	1	25	0	1.00e+00	Retreg2
Stereotopy head waving bouts, day 3	467.79	3	1	25	0	1.00e+00	Mst1 Prr5l Retreg2
Stereotopy head waving duration, day 3	1446.08	2	1	25	0	1.00e+00	Mst1 Retreg2
Locomotion velocity, session 7	210.64	2	2	50	0	1.00e+00	Mst1 Retreg2
Locomotion distance, session 7	342.68	3	2	50	0	1.00e+00	Mst1 Ndufb9 Retreg2
Stereotopy head waving bouts, day 7	855.78	3	2	50	0	1.00e+00	Ndufb9 Prr5l Retreg2
Stereotopy head waving duration, day 7	722.71	3	2	50	0	1.00e+00	Ndufb9 Prr5l Retreg2
Locomotion velocity, session 8	207.96	2	1	25	0	1.00e+00	Prr5l Retreg2
Locomotion distance, session 8	147.88	1	1	25	0	1.00e+00	Retreg2
Degree of sensitization distance	1889.61	2	2	50	0	1.00e+00	Mst1 Retreg2
Degree of sensitization stereotypy	690.43	3	1	25	0	1.00e+00	Mst1 Ndufb9 Retreg2
Condit. Reinf. active minus inactive responses	496.57	2	2	50	0	1.00e+00	Prr5l Retreg2
Condit. Reinf. active-inactive response ratio	130.79	2	1	25	0	1.00e+00	Prr5l Retreg2
Condit. Reinf. active responses	1398.9	2	2	50	0	1.00e+00	Prr5l Retreg2
Condit. Reinf. inactive responses	1569.87	3	1	25	0	1.00e+00	Mst1 Ndufb9 Retreg2
Incentive salience index mean	1202.81	3	2	50	0	1.00e+00	Mst1 Prr5l Retreg2
Condit. Reinf. lever presses	1790.33	3	3	75	0	1.00e+00	Mst1 Prr5l Retreg2
Time in familiar zone, hab. session 1	3733.82	3	1	25	0	1.00e+00	Mst1 Prr5l Retreg2
Time in novel zone, hab. session 1	3096.16	3	3	75	0	1.00e+00	Mst1 Prr5l Retreg2
Total zone transitions, hab. session 1	221.7	2	1	25	0	1.00e+00	Ndufb9 Retreg2
Total locomotion distance, hab. session 1	394.1	1	1	25	0	1.00e+00	Retreg2
Locomotion velocity, hab. session 1	266.96	1	1	25	0	1.00e+00	Retreg2
Time in familiar zone, hab. session 2	1981.22	3	2	50	0	1.00e+00	Mst1 Prr5l Retreg2
Time in novel zone, hab. session 2	2141.15	3	2	50	0	1.00e+00	Mst1 Prr5l Retreg2
Total zone transitions, hab. session 2	23.46	4	1	25	-1	2.21e-03	Mst1 Ndufb9 Prr5l Retreg2
Total locomotion distance, hab. session 2	14.42	3	1	25	0	1.00e+00	Mst1 Prr5l Retreg2
Locomotion velocity, hab. session 2	22.47	2	1	25	0	1.00e+00	Prr5l Retreg2
Novel to familiar place preference ratio	5126.88	3	1	25	0	1.00e+00	Mst1 Prr5l Retreg2
Novelty place preference	4990.08	3	1	25	0	1.00e+00	Mst1 Prr5l Retreg2
Time in novel zone, NPP test	3574.98	3	1	25	0	1.00e+00	Mst1 Prr5l Retreg2
Total zone transitions, NPP test	655.32	3	2	50	0	1.00e+00	Ndufb9 Prr5l Retreg2
Total locomotion distance, NPP test	1687.31	1	1	25	0	1.00e+00	Retreg2
Locomotion velocity, NPP test	953.07	1	1	25	0	1.00e+00	Retreg2
Pavlov. Cond. lever latency	142.17	4	2	50	0.9	9.51e-02	Mst1 Ndufb9 Prr5l Retreg2
Pavlov. Cond. magazine entry latency	9.88	1	0	0	0	1.00e+00	Prr5l
Pavlov. Cond. change in total contacts	356.81	3	1	25	0	1.00e+00	Mst1 Prr5l Retreg2
Pavlov. Cond. index score	146.9	3	2	50	0	1.00e+00	Mst1 Prr5l Retreg2
Pavlov. Cond. latency score	154.01	3	2	50	0	1.00e+00	Mst1 Prr5l Retreg2
Pavlov. Cond. lever contacts	192.25	4	2	50	-0.92	8.27e-02	Mst1 Ndufb9 Prr5l Retreg2
Pavlov. Cond. magazine entry number	175.36	3	2	50	0	1.00e+00	Mst1 Prr5l Retreg2
Pavlov. Cond. intertrial magazine entries	55.26	4	3	75	0.74	2.58e-01	Mst1 Ndufb9 Prr5l Retreg2
Pavlov. Cond. lever-magazine prob. diff.	152.53	3	2	50	0	1.00e+00	Mst1 Prr5l Retreg2
Pavlov. Cond. response bias	208.81	3	2	50	0	1.00e+00	Mst1 Prr5l Retreg2
Bone: apparent density	1826.21	3	1	25	0	1.00e+00	Ndufb9 Prr5l Retreg2
Bone surface	2076.59	3	2	50	0	1.00e+00	Mst1 Prr5l Retreg2
Bone volume	4317.38	2	1	25	0	1.00e+00	Mst1 Retreg2
Bone: connectivity density	431.69	4	2	50	1	2.02e-03	Mst1 Ndufb9 Prr5l Retreg2
Bone: cortical apparent density	6014.36	2	1	25	0	1.00e+00	Ndufb9 Retreg2
Bone: cortical area	1559.21	3	2	50	0	1.00e+00	Mst1 Ndufb9 Retreg2
Bone: cortical porosity	119.96	4	2	50	-0.94	6.31e-02	Mst1 Ndufb9 Prr5l Retreg2
Bone: cortical porosity	383.21	3	2	50	0	1.00e+00	Ndufb9 Prr5l Retreg2
Bone: cortical thickness	157.6	3	2	50	0	1.00e+00	Mst1 Ndufb9 Retreg2
Bone: cortical thickness	750.29	4	2	50	-0.98	1.88e-02	Mst1 Ndufb9 Prr5l Retreg2
Bone: cortical tissue density	4339.01	3	1	25	0	1.00e+00	Mst1 Ndufb9 Retreg2
Bone: elastic displacement	7604.03	1	1	25	0	1.00e+00	Retreg2
Bone: elastic work	132.6	3	2	50	0	1.00e+00	Mst1 Prr5l Retreg2
Bone: endosteal estimation	2975.35	3	1	25	0	1.00e+00	Mst1 Ndufb9 Retreg2
Bone: endosteal perimeter	3958.77	3	1	25	0	1.00e+00	Mst1 Prr5l Retreg2
Bone: final force	840.18	2	2	50	0	1.00e+00	Mst1 Retreg2
Bone: final moment	146.88	2	2	50	0	1.00e+00	Mst1 Retreg2
Bone: marrow area	3148.45	3	1	25	0	1.00e+00	Mst1 Ndufb9 Retreg2
Bone: maximum diameter	2046.98	3	2	50	0	1.00e+00	Mst1 Ndufb9 Retreg2
Bone: maximum force	4390.32	2	2	50	0	1.00e+00	Mst1 Retreg2
Bone: maximum moment	2024.32	3	2	50	0	1.00e+00	Mst1 Ndufb9 Retreg2
Bone: minimum diameter	2061.38	2	2	50	0	1.00e+00	Mst1 Retreg2
Bone: periosteal estimation	4919.52	2	2	50	0	1.00e+00	Mst1 Retreg2
Bone: periosteal perimeter	5722.93	2	2	50	0	1.00e+00	Mst1 Retreg2
Bone: post-yield work	6843.13	2	1	25	0	1.00e+00	Mst1 Retreg2
Bone: stiffness	4554.23	2	2	50	0	1.00e+00	Mst1 Retreg2
Bone: tissue strength	1502.43	2	1	25	0	1.00e+00	Prr5l Retreg2
Bone: trabecular number	3593.28	3	2	50	0	1.00e+00	Ndufb9 Prr5l Retreg2
Bone: trabecular spacing	2669.39	3	3	75	0	1.00e+00	Mst1 Ndufb9 Retreg2
Bone: trabecular thickness	2841.42	3	2	50	0	1.00e+00	Mst1 Prr5l Retreg2
Breakpoint value in progressive ratio session	18809.48	2	1	25	0	1.00e+00	Mst1 Retreg2
Distance traveled before self-admin	16849.56	3	1	25	0	1.00e+00	Mst1 Ndufb9 Retreg2
Distance traveled after self-admin	32464.08	1	1	25	0	1.00e+00	Retreg2
Delta time in closed arm before/after self-admin	87.3	3	1	25	0	1.00e+00	Mst1 Ndufb9 Retreg2
Delta time in open arm before/after self-admin	7570.03	2	1	25	0	1.00e+00	Mst1 Retreg2
Diff in mean of infusions in LGA sessions	12226.72	3	2	50	0	1.00e+00	Mst1 Ndufb9 Retreg2
Extinction: sum of active levers before priming	9494.42	3	3	75	0	1.00e+00	Mst1 Ndufb9 Retreg2
Active lever presses in extinction session 6	384.74	2	2	50	0	1.00e+00	Mst1 Retreg2
Delta distance traveled before/after self-admin	1485.64	2	2	50	0	1.00e+00	Ndufb9 Retreg2
Delta ambulatory time before/after self-admin	15429.45	2	1	25	0	1.00e+00	Ndufb9 Retreg2
Time in closed arm before self-admin	13457.43	2	2	50	0	1.00e+00	Mst1 Retreg2
Time in closed arm after self-admin	2326.29	2	2	50	0	1.00e+00	Mst1 Retreg2
Time in open arm before self-admin	2942.8	3	2	50	0	1.00e+00	Mst1 Ndufb9 Retreg2
Time in open arm after self-admin	200.08	3	3	75	0	1.00e+00	Mst1 Ndufb9 Retreg2
Sum of active levers in priming session hrs 5-6	496.26	2	1	25	0	1.00e+00	Ndufb9 Retreg2
Time to tail flick, vehicle, before self-admin	4467.99	3	2	50	0	1.00e+00	Mst1 Ndufb9 Retreg2
Time to tail flick, vehicle, after self-admin	21081.01	2	1	25	0	1.00e+00	Ndufb9 Retreg2
Time to tail flick, test, before self-admin	2050.46	4	2	50	-1	3.63e-03	Mst1 Ndufb9 Prr5l Retreg2
Time to tail flick, test, after self-admin	374.53	4	2	50	0.98	1.51e-02	Mst1 Ndufb9 Prr5l Retreg2
Delta time to tail flick, vehicle, before/after SA	4924	2	2	50	0	1.00e+00	Mst1 Retreg2
Delta time to tail flick, test, before/after SA	5236.1	3	1	25	0	1.00e+00	Mst1 Ndufb9 Retreg2
Ambulatory time before self-admin	78874.38	1	1	25	0	1.00e+00	Retreg2
Ambulatory time after self-admin	13311.39	2	1	25	0	1.00e+00	Mst1 Retreg2
Total heroin consumption	240.55	1	1	25	0	1.00e+00	Retreg2
Area under the delay curve	24791.27	1	1	25	0	1.00e+00	Retreg2
Delay disc. indifference point, 0s delay	2159.25	1	1	25	0	1.00e+00	Retreg2
Delay disc. indifference point, 16s delay	21959.9	1	1	25	0	1.00e+00	Retreg2
Delay disc. indifference point, 2s delay	155.27	1	1	25	0	1.00e+00	Retreg2
Delay disc. indifference point, 24s delay	32437.06	1	1	25	0	1.00e+00	Retreg2
Delay disc. indifference point, 4s delay	212.93	3	1	25	0	1.00e+00	Mst1 Ndufb9 Retreg2
Delay disc. indifference point, 8s delay	33362.4	1	1	25	0	1.00e+00	Retreg2
Delay discount exponential model param	16922.54	1	1	25	0	1.00e+00	Retreg2
Delay discount hyperbolic model param	12277.65	1	1	25	0	1.00e+00	Retreg2
Fecal boli incidents, locomotor time 1	61202.36	1	1	25	0	1.00e+00	Retreg2
Change in fecal boli incidents, locomotor task	1905.04	3	2	50	0	1.00e+00	Ndufb9 Prr5l Retreg2
Time >=10cm from walls, locomotor time 1	6508.13	2	1	25	0	1.00e+00	Ndufb9 Retreg2
Bouts of movement, locomotor time 1	5395.51	2	1	25	0	1.00e+00	Ndufb9 Retreg2
Total resting periods, locomotor time 1	2793.59	1	1	25	0	1.00e+00	Retreg2
Rest time, locomotor task time 1	7458.94	3	1	25	0	1.00e+00	Ndufb9 Prr5l Retreg2
Distance moved, locomotor task time 1	34443.92	2	2	50	0	1.00e+00	Ndufb9 Retreg2
Vertical activity count, locomotor time 1	142354.07	1	1	25	0	1.00e+00	Retreg2
Time >=10cm from walls, locomotor time 2	71159.6	1	1	25	0	1.00e+00	Retreg2
Bouts of movement, locomotor time 2	82029.05	1	1	25	0	1.00e+00	Retreg2
Total resting periods, locomotor time 2	99042.67	1	1	25	0	1.00e+00	Retreg2
Rest time, locomotor task time 2	12756.26	2	1	25	0	1.00e+00	Ndufb9 Retreg2
Distance moved, locomotor task time 2	4241.68	2	1	25	0	1.00e+00	Ndufb9 Retreg2
Vertical activity count, locomotor time 2	53555.35	1	1	25	0	1.00e+00	Retreg2
Weight adjusted by age	35416.78	2	2	50	0	1.00e+00	Ndufb9 Retreg2
Seeking ratio, delayed vs. immediate footshock	13445.31	1	1	25	0	1.00e+00	Retreg2
Locomotion in novel chamber	1335.14	3	2	50	0	1.00e+00	Ndufb9 Prr5l Retreg2
Locomotion in novel chamber post-restriction	32715.18	2	1	25	0	1.00e+00	Ndufb9 Retreg2
Progressive ratio	22647.06	3	2	50	0	1.00e+00	Ndufb9 Prr5l Retreg2
Food seeking constrained by brief footshock	941.83	2	1	25	0	1.00e+00	Ndufb9 Retreg2
Seeking ratio, punishment vs. effort	13770.78	3	2	50	0	1.00e+00	Ndufb9 Prr5l Retreg2
Run reversals in cocaine runway, females	9406.04	1	1	25	0	1.00e+00	Retreg2
Run reversals in cocaine runway, males	3884.61	2	2	50	0	1.00e+00	Ndufb9 Retreg2
Latency to leave start box in cocaine runway	16290.75	1	1	25	0	1.00e+00	Retreg2
Latency to leave start box in cocaine runway, F	3596.44	2	2	50	0	1.00e+00	Ndufb9 Retreg2
Latency to leave start box in cocaine runway, M	867.32	2	1	25	0	1.00e+00	Ndufb9 Retreg2
Cd content in liver	11.42	1	0	0	0	1.00e+00	Prr5l
Co content in liver	574.66	2	1	25	0	1.00e+00	Prr5l Retreg2
Cu content in liver	28.08	2	1	25	0	1.00e+00	Ndufb9 Retreg2
Fe content in liver	1344.53	1	1	25	0	1.00e+00	Retreg2
K content in liver	1519.62	1	1	25	0	1.00e+00	Retreg2
Mg content in liver	3020.33	2	1	25	0	1.00e+00	Prr5l Retreg2
Mn content in liver	537.3	2	2	50	0	1.00e+00	Ndufb9 Retreg2
Na content in liver	2013.84	2	1	25	0	1.00e+00	Ndufb9 Retreg2
Rb content in liver	49.79	3	2	50	0	1.00e+00	Ndufb9 Prr5l Retreg2
Se content in liver	11.08	2	0	0	0	1.00e+00	Ndufb9 Prr5l
Zn content in liver	1887.46	2	2	50	0	1.00e+00	Ndufb9 Retreg2

Associations by panel

Tissue	RNA modality	# hits	% hits/tests	Avg chisq
Adipose	alternative polyA	0	0	1.41
Adipose	alternative TSS	0	0	1.45
Adipose	gene expression	0	0	1.4
Adipose	isoform ratio	0	0	1.37
Adipose	intron excision ratio	0	0	1.21
Adipose	mRNA stability	1	0	1.41
BLA	alternative polyA	0	0	1.57
BLA	alternative TSS	0	0	1.36
BLA	gene expression	0	0	1.42
BLA	isoform ratio	0	0	1.43
BLA	intron excision ratio	0	0	1.37
BLA	mRNA stability	0	0	1.39
Brain	alternative polyA	0	0	1.49
Brain	alternative TSS	0	0	1.35
Brain	gene expression	0	0	1.39
Brain	isoform ratio	0	0	1.4
Brain	intron excision ratio	0	0	1.36
Brain	mRNA stability	0	0	1.42
Eye	alternative polyA	0	0	1.43
Eye	alternative TSS	0	0	1.34
Eye	gene expression	0	0	1.52
Eye	isoform ratio	0	0	1.44
Eye	intron excision ratio	0	0	1.41
Eye	mRNA stability	0	0	1.41
IC	alternative polyA	0	0	1.47
IC	alternative TSS	0	0	1.42
IC	gene expression	0	0	1.42
IC	isoform ratio	0	0	1.42
IC	intron excision ratio	0	0	1.39
IC	mRNA stability	0	0	1.38
IL	alternative polyA	0	0	1.43
IL	alternative TSS	0	0	1.29
IL	gene expression	0	0	1.41
IL	isoform ratio	0	0	1.5
IL	intron excision ratio	0	0	1.29
IL	mRNA stability	0	0	1.35
LHb	alternative polyA	0	0	1.53
LHb	alternative TSS	0	0	1.52
LHb	gene expression	0	0	1.45
LHb	isoform ratio	0	0	1.48
LHb	intron excision ratio	0	0	1.37
LHb	mRNA stability	0	0	1.47
Liver	alternative polyA	0	0	1.38
Liver	alternative TSS	0	0	1.39
Liver	gene expression	0	0	1.37
Liver	isoform ratio	1	0	1.39
Liver	intron excision ratio	0	0	1.35
Liver	mRNA stability	0	0	1.38
NAcc	alternative polyA	1	0	7.55
NAcc	alternative TSS	0	0	1.35
NAcc	gene expression	0	0	1.43
NAcc	isoform ratio	0	0	1.44
NAcc	intron excision ratio	0	0	1.35
NAcc	mRNA stability	0	0	1.43
OFC	alternative polyA	0	0	1.57
OFC	alternative TSS	0	0	1.28
OFC	gene expression	0	0	1.44
OFC	isoform ratio	0	0	1.39
OFC	intron excision ratio	0	0	1.49
OFC	mRNA stability	0	0	1.42
PL	alternative polyA	0	0	1.48
PL	alternative TSS	0	0	1.37
PL	gene expression	0	0	1.4
PL	isoform ratio	0	0	1.47
PL	intron excision ratio	0	0	1.38
PL	mRNA stability	0	0	1.41
pVTA	alternative polyA	0	0	1.52
pVTA	alternative TSS	0	0	1.39
pVTA	gene expression	0	0	1.44
pVTA	isoform ratio	0	0	1.42
pVTA	intron excision ratio	0	0	1.39
pVTA	mRNA stability	1	0	1.44
RMTg	alternative polyA	0	0	1.47
RMTg	alternative TSS	0	0	1.2
RMTg	gene expression	0	0	1.37
RMTg	isoform ratio	0	0	1.46
RMTg	intron excision ratio	0	0	1.45
RMTg	mRNA stability	0	0	1.3