Tags: Physiology · Bone
Project: r01_doug_adams
5 loci · 17 genes with independent associations · 76 total associated genes
# | Chr | Start pos | End pos | # assoc genes | # joint models | Best TWAS P | Best GWAS P | Cond GWAS P | Joint genes |
---|---|---|---|---|---|---|---|---|---|
1 | chr3 | 126160536 | 128206530 | 42 | 5 | 3.96e-09 | 5.49e-09 | 1.00e+00 | Esf1 Ndufaf5 Tasp1 |
2 | chr10 | 94609547 | 96755402 | 7 | 1 | 1.65e-08 | 7.78e-11 | 2.56e-06 | Map2k6 |
3 | chr10 | 97108442 | 98722043 | 3 | 1 | 1.50e-09 | 2.01e-10 | 2.34e-03 | LOC102549521 |
4 | chr10 | 102999385 | 104405337 | 10 | 3 | 4.14e-08 | 7.18e-08 | NaN | Afmid C1qtnf1 Usp36 |
5 | chr10 | 105295338 | 107195627 | 14 | 7 | 3.22e-12 | 2.68e-10 | NaN | B3gntl1 Dus1l Foxk2 Lrrc45 Rab40b Sectm1a |
Tissue | RNA modality | # hits | % hits/tests | Avg chisq |
---|---|---|---|---|
Adipose | alternative polyA | 4 | 0.1 | 1.73 |
Adipose | alternative TSS | 7 | 0.2 | 1.74 |
Adipose | gene expression | 4 | 0 | 1.61 |
Adipose | isoform ratio | 3 | 0.1 | 1.68 |
Adipose | intron excision ratio | 2 | 0.1 | 1.68 |
Adipose | mRNA stability | 1 | 0 | 1.67 |
BLA | alternative polyA | 0 | 0 | 1.61 |
BLA | alternative TSS | 4 | 0.2 | 1.7 |
BLA | gene expression | 2 | 0 | 1.64 |
BLA | isoform ratio | 4 | 0.1 | 1.65 |
BLA | intron excision ratio | 2 | 0.1 | 1.68 |
BLA | mRNA stability | 1 | 0 | 1.62 |
Brain | alternative polyA | 0 | 0 | 1.6 |
Brain | alternative TSS | 4 | 0.1 | 1.65 |
Brain | gene expression | 6 | 0.1 | 1.64 |
Brain | isoform ratio | 7 | 0.1 | 1.69 |
Brain | intron excision ratio | 5 | 0.1 | 1.7 |
Brain | mRNA stability | 4 | 0.1 | 1.65 |
Eye | alternative polyA | 0 | 0 | 1.73 |
Eye | alternative TSS | 0 | 0 | 1.49 |
Eye | gene expression | 2 | 0.2 | 1.73 |
Eye | isoform ratio | 0 | 0 | 1.68 |
Eye | intron excision ratio | 0 | 0 | 1.49 |
Eye | mRNA stability | 0 | 0 | 1.68 |
IL | alternative polyA | 0 | 0 | 1.65 |
IL | alternative TSS | 0 | 0 | 1.69 |
IL | gene expression | 2 | 0 | 1.67 |
IL | isoform ratio | 0 | 0 | 1.67 |
IL | intron excision ratio | 0 | 0 | 1.63 |
IL | mRNA stability | 1 | 0.1 | 1.64 |
LHb | alternative polyA | 0 | 0 | 1.65 |
LHb | alternative TSS | 1 | 0.2 | 1.55 |
LHb | gene expression | 3 | 0.1 | 1.7 |
LHb | isoform ratio | 0 | 0 | 1.52 |
LHb | intron excision ratio | 2 | 0.2 | 1.51 |
LHb | mRNA stability | 0 | 0 | 1.61 |
Liver | alternative polyA | 0 | 0 | 1.65 |
Liver | alternative TSS | 0 | 0 | 1.58 |
Liver | gene expression | 2 | 0 | 1.61 |
Liver | isoform ratio | 1 | 0 | 1.71 |
Liver | intron excision ratio | 1 | 0 | 1.57 |
Liver | mRNA stability | 1 | 0 | 1.61 |
NAcc | alternative polyA | 1 | 0 | 1.61 |
NAcc | alternative TSS | 4 | 0.1 | 1.61 |
NAcc | gene expression | 2 | 0 | 1.64 |
NAcc | isoform ratio | 5 | 0.1 | 1.67 |
NAcc | intron excision ratio | 5 | 0.1 | 1.65 |
NAcc | mRNA stability | 1 | 0 | 1.62 |
OFC | alternative polyA | 0 | 0 | 1.7 |
OFC | alternative TSS | 0 | 0 | 1.61 |
OFC | gene expression | 5 | 0.1 | 1.66 |
OFC | isoform ratio | 0 | 0 | 1.56 |
OFC | intron excision ratio | 2 | 0.2 | 1.73 |
OFC | mRNA stability | 0 | 0 | 1.55 |
PL | alternative polyA | 0 | 0 | 1.61 |
PL | alternative TSS | 4 | 0.1 | 1.63 |
PL | gene expression | 3 | 0 | 1.64 |
PL | isoform ratio | 5 | 0.1 | 1.72 |
PL | intron excision ratio | 3 | 0.1 | 1.63 |
PL | mRNA stability | 0 | 0 | 1.6 |
pVTA | alternative polyA | 1 | 0.1 | 1.65 |
pVTA | alternative TSS | 5 | 0.4 | 1.54 |
pVTA | gene expression | 3 | 0.1 | 1.65 |
pVTA | isoform ratio | 3 | 0.1 | 1.69 |
pVTA | intron excision ratio | 3 | 0.1 | 1.62 |
pVTA | mRNA stability | 1 | 0.1 | 1.64 |
RMTg | alternative polyA | 0 | 0 | 1.61 |
RMTg | alternative TSS | 0 | 0 | 1.55 |
RMTg | gene expression | 0 | 0 | 1.64 |
RMTg | isoform ratio | 0 | 0 | 1.53 |
RMTg | intron excision ratio | 0 | 0 | 1.55 |
RMTg | mRNA stability | 1 | 0.2 | 1.88 |