Hub : Traits

Social time

Social time indicated by average time that the rat spent with its head in the observation port providing access to the stimulus rat while the sliding door was open in the last three 18-minute sessions for males and females [cs]

Tags: Behavior · Social reinforcement

Project: p50_david_dietz

1 locus · 1 gene with independent associations · 1 total associated gene

Significant Loci

#	Chr	Start pos	End pos	# assoc genes	# joint models	Best TWAS P	Best GWAS P	Cond GWAS P	Joint genes
1	chr3	76033161	77431053	1	1	1.36e-08	4.87e-03	1.6e-05	Fnbp4

Pleiotropic Associations

Trait	Chi2 ratio	# genes+	# genes++	% genes++	Corr	Corr P	Genes
BMI with tail	1.2	1	0	0	0	1e+00	Fnbp4
BMI without tail	3.29	1	0	0	0	1e+00	Fnbp4
Epididymis fat weight	4.43	1	0	0	0	1e+00	Fnbp4
Glucose	4.21	1	0	0	0	1e+00	Fnbp4
Length without tail	4.01	1	0	0	0	1e+00	Fnbp4
Retroperitoneal fat weight	1.67	1	0	0	0	1e+00	Fnbp4
Mean time between licks in bursts	2.79	1	0	0	0	1e+00	Fnbp4
Std. dev. time between licks in bursts	10.75	1	0	0	0	1e+00	Fnbp4
Patch foraging indifference point AUC	6.71	1	0	0	0	1e+00	Fnbp4
Patch foraging total patch changes 12 sec	3.93	1	0	0	0	1e+00	Fnbp4
Patch foraging total patch changes 24 sec	9.12	1	0	0	0	1e+00	Fnbp4
Patch foraging total patch changes 6 sec	6.51	1	0	0	0	1e+00	Fnbp4
Patch foraging time to switch 0 sec	3.32	1	0	0	0	1e+00	Fnbp4
Patch foraging water rate 0 sec	3.6	1	0	0	0	1e+00	Fnbp4
Locomotor activity	3.75	1	0	0	0	1e+00	Fnbp4
Locomotor testing distance	14.46	1	0	0	0	1e+00	Fnbp4
Locomotor testing rearing	22.07	1	1	100	0	1e+00	Fnbp4
Light reinforcement 2	11.19	1	0	0	0	1e+00	Fnbp4
Reaction time mean minus median	3.12	1	0	0	0	1e+00	Fnbp4
Reaction time num false alarms	4.23	1	0	0	0	1e+00	Fnbp4
Reaction time num false alarms AUC	4.78	1	0	0	0	1e+00	Fnbp4
Reaction time false alarm rate	4.37	1	0	0	0	1e+00	Fnbp4
Social response proportion	12.32	1	0	0	0	1e+00	Fnbp4
Pavlov. Cond. magazine entry latency	3.57	1	0	0	0	1e+00	Fnbp4
Pavlov. Cond. index score	3.57	1	0	0	0	1e+00	Fnbp4
Pavlov. Cond. magazine entry number	4.67	1	0	0	0	1e+00	Fnbp4
Pavlov. Cond. lever-magazine prob. diff.	3.32	1	0	0	0	1e+00	Fnbp4
Conditioned reinforcement - actives	6.77	1	0	0	0	1e+00	Fnbp4
Intermittent access intake day 1-15 change	13.55	1	0	0	0	1e+00	Fnbp4
Intermittent access intake escalation	9.05	1	0	0	0	1e+00	Fnbp4
Intermittent access intake escalation 2	19.63	1	0	0	0	1e+00	Fnbp4
Intermitt. access day 15 inactive lever presses	13.48	1	0	0	0	1e+00	Fnbp4
Intermittent access terminal intake (last 3 days)	7.14	1	0	0	0	1e+00	Fnbp4
Intermittent access standard deviation	14.61	1	0	0	0	1e+00	Fnbp4
Incentive Sensitization - Responses	10.09	1	0	0	0	1e+00	Fnbp4
Incentive Sensitization - Breakpoint	9.99	1	0	0	0	1e+00	Fnbp4
Short access day 10 total inactive lever presses	4.44	1	0	0	0	1e+00	Fnbp4
Locomotion velocity, session 2	4.36	1	0	0	0	1e+00	Fnbp4
Locomotion distance, session 2	3.64	1	0	0	0	1e+00	Fnbp4
Stereotopy head waving duration, day 3	3.3	1	0	0	0	1e+00	Fnbp4
Locomotion distance, session 7	4.4	1	0	0	0	1e+00	Fnbp4
Degree of sensitization distance	4.58	1	0	0	0	1e+00	Fnbp4
Degree of sensitization stereotypy	8.3	1	0	0	0	1e+00	Fnbp4
Condit. Reinf. inactive responses	4.32	1	0	0	0	1e+00	Fnbp4
Condit. Reinf. lever presses	3.49	1	0	0	0	1e+00	Fnbp4
Time in novel zone, hab. session 2	4.37	1	0	0	0	1e+00	Fnbp4
Total zone transitions, hab. session 2	5.02	1	0	0	0	1e+00	Fnbp4
Total locomotion distance, hab. session 2	5.36	1	0	0	0	1e+00	Fnbp4
Locomotion velocity, hab. session 2	5.82	1	0	0	0	1e+00	Fnbp4
Total locomotion distance, NPP test	4.42	1	0	0	0	1e+00	Fnbp4
Locomotion velocity, NPP test	4.11	1	0	0	0	1e+00	Fnbp4
Pavlov. Cond. magazine entry latency	3.19	1	0	0	0	1e+00	Fnbp4
Pavlov. Cond. lever-magazine prob. diff.	3.8	1	0	0	0	1e+00	Fnbp4
Bone: final force	2.69	1	0	0	0	1e+00	Fnbp4
Bone: final moment	3.21	1	0	0	0	1e+00	Fnbp4
Bone: trabecular tissue density	2.81	1	0	0	0	1e+00	Fnbp4
Total resting periods, locomotor time 1	3.54	1	0	0	0	1e+00	Fnbp4
Rest time, locomotor task time 1	8.96	1	0	0	0	1e+00	Fnbp4
Distance moved, locomotor task time 1	19.62	1	0	0	0	1e+00	Fnbp4
Rest time, locomotor task time 2	11.32	1	0	0	0	1e+00	Fnbp4
Distance moved, locomotor task time 2	9.26	1	0	0	0	1e+00	Fnbp4
Vertical activity count, locomotor time 2	4.54	1	0	0	0	1e+00	Fnbp4
Food seeking constrained by brief footshock	5.6	1	0	0	0	1e+00	Fnbp4
Latency to leave start box in cocaine runway, F	6.4	1	0	0	0	1e+00	Fnbp4
Co content in liver	3.71	1	0	0	0	1e+00	Fnbp4

Associations by panel

Tissue	RNA modality	# hits	% hits/tests	Avg chisq
Adipose	alternative polyA	0	0	1.27
Adipose	alternative TSS	0	0	1.3
Adipose	gene expression	0	0	1.26
Adipose	isoform ratio	1	0	1.35
Adipose	intron excision ratio	0	0	1.46
Adipose	mRNA stability	0	0	1.29
BLA	alternative polyA	0	0	1.33
BLA	alternative TSS	0	0	1.29
BLA	gene expression	0	0	1.33
BLA	isoform ratio	0	0	1.3
BLA	intron excision ratio	0	0	1.41
BLA	mRNA stability	0	0	1.29
Brain	alternative polyA	0	0	1.35
Brain	alternative TSS	0	0	1.29
Brain	gene expression	0	0	1.3
Brain	isoform ratio	0	0	1.32
Brain	intron excision ratio	0	0	1.4
Brain	mRNA stability	0	0	1.31
Eye	alternative polyA	0	0	1.71
Eye	alternative TSS	0	0	1.51
Eye	gene expression	0	0	1.39
Eye	isoform ratio	0	0	1.32
Eye	intron excision ratio	0	0	1.53
Eye	mRNA stability	0	0	1.56
IL	alternative polyA	0	0	1.46
IL	alternative TSS	0	0	1.27
IL	gene expression	0	0	1.35
IL	isoform ratio	0	0	1.37
IL	intron excision ratio	0	0	1.26
IL	mRNA stability	0	0	1.25
LHb	alternative polyA	0	0	1.26
LHb	alternative TSS	0	0	1.35
LHb	gene expression	0	0	1.32
LHb	isoform ratio	0	0	1.31
LHb	intron excision ratio	0	0	1.5
LHb	mRNA stability	0	0	1.29
Liver	alternative polyA	0	0	1.34
Liver	alternative TSS	0	0	1.26
Liver	gene expression	0	0	1.27
Liver	isoform ratio	0	0	1.3
Liver	intron excision ratio	0	0	1.38
Liver	mRNA stability	0	0	1.27
NAcc	alternative polyA	0	0	1.36
NAcc	alternative TSS	0	0	1.29
NAcc	gene expression	0	0	1.32
NAcc	isoform ratio	0	0	1.3
NAcc	intron excision ratio	0	0	1.32
NAcc	mRNA stability	0	0	1.3
OFC	alternative polyA	0	0	1.42
OFC	alternative TSS	0	0	1.2
OFC	gene expression	0	0	1.31
OFC	isoform ratio	0	0	1.35
OFC	intron excision ratio	0	0	1.37
OFC	mRNA stability	0	0	1.35
PL	alternative polyA	0	0	1.35
PL	alternative TSS	0	0	1.25
PL	gene expression	0	0	1.3
PL	isoform ratio	0	0	1.31
PL	intron excision ratio	0	0	1.31
PL	mRNA stability	0	0	1.32
pVTA	alternative polyA	0	0	1.34
pVTA	alternative TSS	0	0	1.24
pVTA	gene expression	0	0	1.36
pVTA	isoform ratio	0	0	1.28
pVTA	intron excision ratio	0	0	1.37
pVTA	mRNA stability	0	0	1.37
RMTg	alternative polyA	0	0	1.44
RMTg	alternative TSS	0	0	1.23
RMTg	gene expression	0	0	1.4
RMTg	isoform ratio	0	0	1.33
RMTg	intron excision ratio	0	0	1.6
RMTg	mRNA stability	0	0	1.4