Hub : Traits

Fe content in liver

Tags: Physiology · Liver

Project: vulpe_liver_2014

1 loci · 1 genes with independent associations · 1 total associated genes

Significant Loci

#	Chr	Start pos	End pos	# assoc genes	# joint models	Best TWAS P	Best GWAS P	Cond GWAS P	Joint genes
1	1	201865024	202832586	1	1	9.5e-08	3.14e-01	1e+00	Ccs

Pleiotropic Associations

Trait	Chi2 ratio	# genes+	# genes++	% genes++	Corr	Corr P	Genes
Number of licking bursts	8.09	1	0	0	0	1e+00	Ccs
Food consumed during 24 hour testing period	18.59	1	0	0	0	1e+00	Ccs
Mean num. licks in bursts	5.11	1	0	0	0	1e+00	Ccs
Water consumed over 24 hours	11.49	1	0	0	0	1e+00	Ccs
Delay discounting water rate 12 sec	2.66	1	0	0	0	1e+00	Ccs
Bone: post-yield work	4.44	1	0	0	0	1e+00	Ccs
Cd content in liver	5.76	1	0	0	0	1e+00	Ccs
Co content in liver	35.23	1	1	100	0	1e+00	Ccs
K content in liver	9.93	1	0	0	0	1e+00	Ccs
Mg content in liver	22.35	1	0	0	0	1e+00	Ccs
Mn content in liver	4.71	1	0	0	0	1e+00	Ccs
Na content in liver	11.48	1	0	0	0	1e+00	Ccs
Se content in liver	35.14	1	1	100	0	1e+00	Ccs
Zn content in liver	37.9	1	1	100	0	1e+00	Ccs

Associations by panel

Tissue	RNA modality	# hits	% hits/tests	Avg chisq
Adipose	alternative polyA	0	0	1.14
Adipose	alternative TSS	0	0	1.23
Adipose	gene expression	0	0	1.19
Adipose	isoform ratio	0	0	1.18
Adipose	intron excision ratio	0	0	1.16
Adipose	mRNA stability	0	0	1.2
BLA	alternative polyA	0	0	1.19
BLA	alternative TSS	0	0	1.14
BLA	gene expression	0	0	1.18
BLA	isoform ratio	0	0	1.14
BLA	intron excision ratio	0	0	1.22
BLA	mRNA stability	0	0	1.26
Brain	alternative polyA	0	0	1.26
Brain	alternative TSS	0	0	1.21
Brain	gene expression	0	0	1.19
Brain	isoform ratio	0	0	1.11
Brain	intron excision ratio	0	0	1.23
Brain	mRNA stability	0	0	1.2
Eye	alternative polyA	0	0	1.04
Eye	alternative TSS	0	0	1.24
Eye	gene expression	0	0	1.18
Eye	isoform ratio	0	0	1.07
Eye	intron excision ratio	0	0	1.08
Eye	mRNA stability	0	0	1.22
IL	alternative polyA	0	0	1.23
IL	alternative TSS	0	0	1.26
IL	gene expression	0	0	1.18
IL	isoform ratio	0	0	1.17
IL	intron excision ratio	0	0	1.23
IL	mRNA stability	0	0	1.23
LHb	alternative polyA	0	0	1.04
LHb	alternative TSS	0	0	1.34
LHb	gene expression	0	0	1.15
LHb	isoform ratio	0	0	1.12
LHb	intron excision ratio	0	0	1.22
LHb	mRNA stability	0	0	1.28
Liver	alternative polyA	0	0	1.3
Liver	alternative TSS	0	0	1.22
Liver	gene expression	1	0	1.16
Liver	isoform ratio	0	0	1.19
Liver	intron excision ratio	0	0	1.24
Liver	mRNA stability	0	0	1.17
NAcc	alternative polyA	0	0	1.16
NAcc	alternative TSS	0	0	1.29
NAcc	gene expression	0	0	1.18
NAcc	isoform ratio	0	0	1.16
NAcc	intron excision ratio	0	0	1.2
NAcc	mRNA stability	0	0	1.22
OFC	alternative polyA	0	0	1.16
OFC	alternative TSS	0	0	1.1
OFC	gene expression	0	0	1.21
OFC	isoform ratio	0	0	1.13
OFC	intron excision ratio	0	0	1.16
OFC	mRNA stability	0	0	1.25
PL	alternative polyA	0	0	1.16
PL	alternative TSS	0	0	1.18
PL	gene expression	0	0	1.16
PL	isoform ratio	0	0	1.1
PL	intron excision ratio	0	0	1.21
PL	mRNA stability	0	0	1.22