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Pavlov. Cond. change in total contacts

Pavlovian Conditioned Approach, Change in total contacts across 5 days of testing

Tags: Behavior · Pavlovian conditioned approach · Conditioned reinforcement

Project: p50_paul_meyer_2014

29 significantly associated models · 13 unique genes

Significant Loci

# chr p0 p1 # assoc genes # joint models best TWAS P best SNP P cond SNP P % var exp joint genes
1 1 152745768 154141057 1 1 2.3e-07 1.7e-06 1 100 Uvrag
2 1 154277716 157352620 11 4 9.1e-08 1.5e-07 1 100 Numa1 Mrpl48 Atg16l2 Arap1
3 7 16845355 16970279 1 1 1.1e-67 NaN NA NA NA

p0: physical position of the start of the locus. p1: physical position of the end of the locus. # joint models: number of models selected by step-wise conditional analysis.

Pleiotropic Associations

Trait chisq ratio # genes+ # genes++ % genes++ corr corr P genes
BMI without tail 106.7 1 1 17 0.00 1.0e+00 NA
Body weight 7.7 1 1 17 0.00 1.0e+00 NA
Epididymis fat weight 87.6 1 1 17 0.00 1.0e+00 NA
Glucose 6.6 1 0 0 0.00 1.0e+00 NA
Heart weight 11.4 1 0 0 0.00 1.0e+00 NA
Left kidney weight 37.5 1 1 17 0.00 1.0e+00 NA
Right kidney weight 41.9 1 1 17 0.00 1.0e+00 NA
Tail length 11.0 9 1 17 -0.18 5.1e-01 Numa1 Mrpl48 P2ry2 Atg16l2 Arap1 Inppl1 Pgap2 Rhog NA
Length with tail 3.4 2 0 0 0.00 1.0e+00 Mrpl48 NA
Length without tail 71.1 1 1 17 0.00 1.0e+00 NA
Liver weight, left 23.6 1 1 17 0.00 1.0e+00 NA
Liver weight, right 9.6 1 0 0 0.00 1.0e+00 NA
Parametrial fat weight 26.4 1 1 17 0.00 1.0e+00 NA
Retroperitoneal fat weight 3.7 2 0 0 0.00 1.0e+00 Uvrag NA
Intraocular pressure 19.0 1 1 17 0.00 1.0e+00 NA
Extensor digitorum longus weight 25.8 1 1 17 0.00 1.0e+00 NA
Soleus weight 13.7 1 1 17 0.00 1.0e+00 NA
Tibialis anterior weight 59.9 1 1 17 0.00 1.0e+00 NA
Tibia length 7.4 1 0 0 0.00 1.0e+00 NA
Number of licking bursts 155.0 1 1 17 0.00 1.0e+00 NA
Food consumed during 24 hour testing period 17.5 1 0 0 0.00 1.0e+00 NA
Times rat made contact with spout 75.1 1 1 17 0.00 1.0e+00 NA
Mean time between licks in bursts 18.2 4 1 17 1.00 3.7e-14 Mrpl48 P2ry2 Arap1 NA
Mean num. licks in bursts 164.2 1 1 17 0.00 1.0e+00 NA
Std. dev. time between licks in bursts 177.7 1 1 17 0.00 1.0e+00 NA
Indifference point 0 sec 14.6 2 1 17 0.00 1.0e+00 Uvrag NA
Indifference point AUC 42.1 1 1 17 0.00 1.0e+00 NA
Delay discounting total patch changes 0 sec 17.7 1 1 17 0.00 1.0e+00 NA
Delay discounting total patch changes 12 sec 102.7 1 1 17 0.00 1.0e+00 NA
Delay discounting total patch changes 18 sec 175.3 1 1 17 0.00 1.0e+00 NA
Delay discounting total patch changes 24 sec 28.3 1 1 17 0.00 1.0e+00 NA
Delay discounting total patch changes 6 sec 98.5 1 1 17 0.00 1.0e+00 NA
Delay discounting water rate 0 sec 11.8 1 0 0 0.00 1.0e+00 NA
Delay discounting water rate 12 sec 26.1 1 1 17 0.00 1.0e+00 NA
Delay discounting water rate 18 sec 10.5 1 0 0 0.00 1.0e+00 NA
Delay discounting water rate 24 sec 62.7 1 1 17 0.00 1.0e+00 NA
Delay discounting water rate 6 sec 44.2 1 1 17 0.00 1.0e+00 NA
Locomotor testing distance 11.5 1 0 0 0.00 1.0e+00 NA
Locomotor testing rearing 16.8 1 1 17 0.00 1.0e+00 NA
Light reinforcement 1 54.8 1 1 17 0.00 1.0e+00 NA
Reaction time number correct 9.4 1 0 0 0.00 1.0e+00 NA
Reaction time num false alarms 56.4 1 1 17 0.00 1.0e+00 NA
Reaction time num false alarms AUC 79.5 1 1 17 0.00 1.0e+00 NA
Reaction time trials correct on left 9.4 1 0 0 0.00 1.0e+00 NA
Reaction time trials on left 10.3 1 0 0 0.00 1.0e+00 NA
Reaction time mean 41.3 1 1 17 0.00 1.0e+00 NA
Reaction time mean AUC 58.0 1 1 17 0.00 1.0e+00 NA
Median of all reaction times 51.2 1 1 17 0.00 1.0e+00 NA
Reaction time false alarm rate 63.4 1 1 17 0.00 1.0e+00 NA
Reaction time premature initiation rate 32.1 1 1 17 0.00 1.0e+00 NA
Reaction time premature initiations 34.3 1 1 17 0.00 1.0e+00 NA
Std. dev. reaction times 17.4 1 1 17 0.00 1.0e+00 NA
Reaction time trials completed 10.3 1 0 0 0.00 1.0e+00 NA
Reaction time trials AUC 15.6 1 0 0 0.00 1.0e+00 NA
Social responses 74.3 1 1 17 0.00 1.0e+00 NA
Social time 7.8 1 0 0 0.00 1.0e+00 NA
Cocaine response after cond. corrected 78.0 1 1 17 0.00 1.0e+00 NA
Cocaine response after cond. not corrected 102.3 1 1 17 0.00 1.0e+00 NA
Cocaine response before conditioning 28.6 1 1 17 0.00 1.0e+00 NA
Saline control response 30.3 1 1 17 0.00 1.0e+00 NA
Condit. Reinf. active minus inactive responses 12.8 10 1 17 0.43 3.4e-02 Numa1 Uvrag Mrpl48 P2ry2 Atg16l2 Arap1 Inppl1 Pgap2 Rhog NA
Condit. Reinf. active-inactive response ratio 40.7 1 1 17 0.00 1.0e+00 NA
Condit. Reinf. active responses 13.1 13 0 0 0.72 1.7e-05 Numa1 Uvrag Mrpl48 P2ry2 Atg16l2 Arap1 Clpb Inppl1 Nup98 Pgap2 Rhog Stim1 NA
Condit. Reinf. inactive responses 11.1 4 0 0 0.93 1.6e-06 Mrpl48 P2ry2 Arap1 NA
Condit. Reinf. lever presses 20.8 12 7 117 1.00 2.2e-31 Numa1 Uvrag Mrpl48 P2ry2 Atg16l2 Arap1 Clpb Inppl1 Nup98 Pgap2 Rhog Stim1
Condit. Reinf. lever reinforcers received 14.4 12 3 50 0.99 4.3e-24 Numa1 Uvrag Mrpl48 P2ry2 Atg16l2 Arap1 Clpb Inppl1 Nup98 Pgap2 Rhog Stim1
Pavlov. Cond. lever latency 23.2 13 13 217 -0.96 1.4e-16 Numa1 Uvrag Mrpl48 P2ry2 Atg16l2 Arap1 Clpb Inppl1 Nup98 Pgap2 Rhog Stim1 NA
Pavlov. Cond. magazine entry latency 72.8 2 1 17 0.00 1.0e+00 Nup98 NA
Pavlov. Cond. index score 20.0 13 1 17 0.99 1.6e-25 Numa1 Uvrag Mrpl48 P2ry2 Atg16l2 Arap1 Clpb Inppl1 Nup98 Pgap2 Rhog Stim1 NA
Pavlov. Cond. latency score 18.8 13 1 17 1.00 2.8e-29 Numa1 Uvrag Mrpl48 P2ry2 Atg16l2 Arap1 Clpb Inppl1 Nup98 Pgap2 Rhog Stim1 NA
Pavlov. Cond. lever contacts 23.2 13 13 217 0.94 1.6e-13 Numa1 Uvrag Mrpl48 P2ry2 Atg16l2 Arap1 Clpb Inppl1 Nup98 Pgap2 Rhog Stim1 NA
Pavlov. Cond. magazine entry number 28.1 10 1 17 -0.99 3.6e-12 Numa1 Uvrag Atg16l2 Clpb Inppl1 Nup98 Pgap2 Rhog Stim1 NA
Pavlov. Cond. intertrial magazine entries 63.9 1 1 17 0.00 1.0e+00 NA
Pavlov. Cond. lever-magazine prob. diff. 18.8 13 1 17 0.99 2.4e-24 Numa1 Uvrag Mrpl48 P2ry2 Atg16l2 Arap1 Clpb Inppl1 Nup98 Pgap2 Rhog Stim1 NA
Pavlov. Cond. response bias 23.8 13 13 217 0.95 1.9e-15 Numa1 Uvrag Mrpl48 P2ry2 Atg16l2 Arap1 Clpb Inppl1 Nup98 Pgap2 Rhog Stim1 NA
Conditioned reinforcement - actives 18.5 1 0 0 0.00 1.0e+00 NA
Conditioned locomotion 9.9 1 0 0 0.00 1.0e+00 NA
Intermittent access intake day 1-15 change 61.5 1 1 17 0.00 1.0e+00 NA
Intermittent access intake escalation 82.5 1 1 17 0.00 1.0e+00 NA
Intermittent access intake escalation 2 42.5 1 1 17 0.00 1.0e+00 NA
Intermitt. access day 1 inactive lever presses 30.6 1 1 17 0.00 1.0e+00 NA
Intermittent access day 1 total infusions 32.7 1 1 17 0.00 1.0e+00 NA
Intermittent access day 1 locomotion 18.4 1 1 17 0.00 1.0e+00 NA
Post-drug Anxiety 20.6 1 0 0 0.00 1.0e+00 NA
Progressive ratio test 1 active lever presses 11.8 1 0 0 0.00 1.0e+00 NA
Progressive ratio test 1 breakpoint 10.4 1 0 0 0.00 1.0e+00 NA
Progressive ratio test 1 inactive lever presses 10.8 1 0 0 0.00 1.0e+00 NA
Progressive ratio test 2 active lever presses 12.2 1 0 0 0.00 1.0e+00 NA
Progressive ratio test 2 breakpoint 38.7 1 1 17 0.00 1.0e+00 NA
Short access day 10 total inactive lever presses 12.2 1 0 0 0.00 1.0e+00 NA
Short access day 10 total infusions 24.0 1 1 17 0.00 1.0e+00 NA
Short access day 1 locomotion 17.2 1 0 0 0.00 1.0e+00 NA
Compulsive drug intake 28.2 1 1 17 0.00 1.0e+00 NA
One hour access (0.3 mA shock) 10.4 1 0 0 0.00 1.0e+00 NA
Context. condit. distance diff. score 149.8 1 1 17 0.00 1.0e+00 NA
Locomotion velocity, session 1 117.8 1 1 17 0.00 1.0e+00 NA
Locomotion distance, session 1 374.7 1 1 17 0.00 1.0e+00 NA
Locomotion velocity, session 2 82.2 1 1 17 0.00 1.0e+00 NA
Locomotion distance, session 2 776.0 1 1 17 0.00 1.0e+00 NA
Locomotion velocity, session 3 116.1 1 1 17 0.00 1.0e+00 NA
Locomotion distance, session 3 82.4 1 1 17 0.00 1.0e+00 NA
Stereotopy head waving bouts, day 3 8.8 1 0 0 0.00 1.0e+00 NA
Stereotopy head waving duration, day 3 25.6 1 1 17 0.00 1.0e+00 NA
Locomotion velocity, session 7 66.3 1 1 17 0.00 1.0e+00 NA
Locomotion distance, session 7 21.3 1 1 17 0.00 1.0e+00 NA
Stereotopy head waving bouts, day 7 42.6 1 1 17 0.00 1.0e+00 NA
Stereotopy head waving duration, day 7 63.4 1 1 17 0.00 1.0e+00 NA
Locomotion distance, session 8 102.8 1 1 17 0.00 1.0e+00 NA
Degree of sensitization distance 140.6 1 1 17 0.00 1.0e+00 NA
Degree of sensitization stereotypy 15.2 4 1 17 0.98 3.0e-03 Atg16l2 Clpb Inppl1 NA
Condit. Reinf. active-inactive response ratio 65.1 1 1 17 0.00 1.0e+00 NA
Condit. Reinf. active responses 20.0 1 0 0 0.00 1.0e+00 NA
Condit. Reinf. inactive responses 17.2 1 0 0 0.00 1.0e+00 NA
Incentive salience index mean 15.6 1 0 0 0.00 1.0e+00 NA
Condit. Reinf. lever presses 35.1 1 1 17 0.00 1.0e+00 NA
Time in familiar zone, hab. session 1 16.4 1 0 0 0.00 1.0e+00 NA
Time in novel zone, hab. session 1 17.4 1 0 0 0.00 1.0e+00 NA
Total zone transitions, hab. session 1 415.6 1 1 17 0.00 1.0e+00 NA
Total locomotion distance, hab. session 1 171.4 1 1 17 0.00 1.0e+00 NA
Locomotion velocity, hab. session 1 218.6 1 1 17 0.00 1.0e+00 NA
Time in familiar zone, hab. session 2 48.9 1 1 17 0.00 1.0e+00 NA
Time in novel zone, hab. session 2 58.4 1 1 17 0.00 1.0e+00 NA
Total zone transitions, hab. session 2 256.1 1 1 17 0.00 1.0e+00 NA
Total locomotion distance, hab. session 2 133.1 1 1 17 0.00 1.0e+00 NA
Locomotion velocity, hab. session 2 139.4 1 1 17 0.00 1.0e+00 NA
Total zone transitions, NPP test 228.8 1 1 17 0.00 1.0e+00 NA
Total locomotion distance, NPP test 163.4 1 1 17 0.00 1.0e+00 NA
Locomotion velocity, NPP test 195.9 1 1 17 0.00 1.0e+00 NA
Pavlov. Cond. lever latency 8.6 1 0 0 0.00 1.0e+00 NA
Pavlov. Cond. magazine entry latency 56.4 1 1 17 0.00 1.0e+00 NA
Pavlov. Cond. change in total contacts 40.1 1 1 17 0.00 1.0e+00 NA
Pavlov. Cond. index score 51.9 1 1 17 0.00 1.0e+00 NA
Pavlov. Cond. latency score 16.6 1 0 0 0.00 1.0e+00 NA
Pavlov. Cond. lever contacts 13.3 1 0 0 0.00 1.0e+00 NA
Pavlov. Cond. magazine entry number 34.9 1 1 17 0.00 1.0e+00 NA
Pavlov. Cond. lever-magazine prob. diff. 50.5 1 1 17 0.00 1.0e+00 NA
Pavlov. Cond. response bias 52.4 1 1 17 0.00 1.0e+00 NA
Bone: apparent density 31.2 1 1 17 0.00 1.0e+00 NA
Bone surface 28.9 1 1 17 0.00 1.0e+00 NA
Bone volume 32.3 1 1 17 0.00 1.0e+00 NA
Bone: connectivity density 8.5 1 0 0 0.00 1.0e+00 NA
Bone: cortical porosity 109.3 1 1 17 0.00 1.0e+00 NA
Bone: cortical porosity 91.2 1 1 17 0.00 1.0e+00 NA
Bone: cortical thickness 8.8 1 0 0 0.00 1.0e+00 NA
Bone: cortical thickness 17.9 1 0 0 0.00 1.0e+00 NA
Bone: elastic displacement 28.2 1 1 17 0.00 1.0e+00 NA
Bone: endosteal estimation 12.7 1 1 17 0.00 1.0e+00 NA
Bone: final force 39.5 1 1 17 0.00 1.0e+00 NA
Bone: final moment 31.9 1 1 17 0.00 1.0e+00 NA
Bone: marrow area 10.6 1 1 17 0.00 1.0e+00 NA
Bone: maximum force 42.0 1 1 17 0.00 1.0e+00 NA
Bone: maximum moment 29.5 1 1 17 0.00 1.0e+00 NA
Bone: minimum diameter 57.3 1 1 17 0.00 1.0e+00 NA
Bone: periosteal estimation 7.8 1 0 0 0.00 1.0e+00 NA
Bone: periosteal perimeter 8.8 1 0 0 0.00 1.0e+00 NA
Bone: post-yield work 82.8 1 1 17 0.00 1.0e+00 NA
Bone: stiffness 90.4 1 1 17 0.00 1.0e+00 NA
Bone: tissue strength 81.0 1 1 17 0.00 1.0e+00 NA
Bone: trabecular number 39.4 1 1 17 0.00 1.0e+00 NA
Bone: trabecular thickness 13.8 1 0 0 0.00 1.0e+00 NA
Bone: trabecular tissue density 43.1 1 1 17 0.00 1.0e+00 NA
Distance traveled before self-admin 12.6 1 0 0 0.00 1.0e+00 NA
Delta time in open arm before/after self-admin 40.2 1 1 17 0.00 1.0e+00 NA
Extinction: sum of active levers before priming 12.2 1 0 0 0.00 1.0e+00 NA
Delta distance traveled before/after self-admin 11.3 1 0 0 0.00 1.0e+00 NA
Time in closed arm before self-admin 50.0 1 1 17 0.00 1.0e+00 NA
Time in closed arm after self-admin 25.8 1 1 17 0.00 1.0e+00 NA
Time in open arm after self-admin 31.3 1 1 17 0.00 1.0e+00 NA
Delta time to tail flick, test, before/after SA 20.0 1 0 0 0.00 1.0e+00 NA
Fecal boli incidents, locomotor time 1 11.8 1 0 0 0.00 1.0e+00 NA
Time >=10cm from walls, locomotor time 1 19.5 1 0 0 0.00 1.0e+00 NA
Time >=10cm from walls, locomotor time 2 19.4 1 1 17 0.00 1.0e+00 NA
Rest time, locomotor task time 2 8.8 1 0 0 0.00 1.0e+00 NA
Distance moved, locomotor task time 2 13.1 1 0 0 0.00 1.0e+00 NA
Weight adjusted by age 25.0 1 1 17 0.00 1.0e+00 NA
Locomotion in novel chamber 10.2 1 0 0 0.00 1.0e+00 NA
Run reversals in cocaine runway, males 25.4 1 1 17 0.00 1.0e+00 NA
Latency to leave start box in cocaine runway 18.8 1 0 0 0.00 1.0e+00 NA
Cd content in liver 140.5 1 1 17 0.00 1.0e+00 NA
Co content in liver 83.2 1 1 17 0.00 1.0e+00 NA
Fe content in liver 10.3 1 0 0 0.00 1.0e+00 NA
K content in liver 62.6 1 1 17 0.00 1.0e+00 NA
Mn content in liver 130.2 1 1 17 0.00 1.0e+00 NA
Rb content in liver 31.4 1 1 17 0.00 1.0e+00 NA
Se content in liver 47.0 1 1 17 0.00 1.0e+00 NA
Zn content in liver 46.0 1 1 17 0.00 1.0e+00 NA

chisq ratio: Average Chi2 statistic for the selected genes in the secondary trait, divided by the average statistic for all genes in the secondary trait. # genes+: Shared significant genes at Bonferroni correction. # genes++: Shared significant genes at transcriptome-wide significance. % genes++: Number of [++] genes as a percentage of primary trait’s total joint genes. corr: Correlation of effect sizes across the [+] genes.

Associations by panel

tissue modality # hits % hits/tests avg chisq
Adipose alternative polyA 3 0.141 1.5
Adipose alternative TSS 4 0.248 1.4
Adipose gene expression 1 0.012 1.4
Adipose isoform ratio 0 0.000 1.4
Adipose intron excision ratio 0 0.000 1.3
Adipose mRNA stability 1 0.029 1.5
BLA alternative polyA 0 0.000 1.5
BLA alternative TSS 0 0.000 1.4
BLA gene expression 0 0.000 1.4
BLA isoform ratio 0 0.000 1.3
BLA intron excision ratio 0 0.000 1.3
BLA mRNA stability 0 0.000 1.4
Brain alternative polyA 0 0.000 1.5
Brain alternative TSS 0 0.000 1.3
Brain gene expression 1 0.011 1.4
Brain isoform ratio 0 0.000 1.4
Brain intron excision ratio 0 0.000 1.4
Brain mRNA stability 1 0.023 1.4
Eye alternative polyA 0 0.000 1.3
Eye alternative TSS 0 0.000 1.7
Eye gene expression 0 0.000 1.4
Eye isoform ratio 0 0.000 1.5
Eye intron excision ratio 0 0.000 1.5
Eye mRNA stability 0 0.000 1.5
IL alternative polyA 0 0.000 1.4
IL alternative TSS 0 0.000 1.3
IL gene expression 0 0.000 1.4
IL isoform ratio 0 0.000 1.4
IL intron excision ratio 1 0.104 1.4
IL mRNA stability 0 0.000 1.4
LHb alternative polyA 0 0.000 1.5
LHb alternative TSS 0 0.000 1.1
LHb gene expression 0 0.000 1.4
LHb isoform ratio 0 0.000 1.4
LHb intron excision ratio 0 0.000 1.4
LHb mRNA stability 0 0.000 1.4
Liver alternative polyA 4 0.266 1.6
Liver alternative TSS 0 0.000 1.4
Liver gene expression 5 0.070 1.4
Liver isoform ratio 0 0.000 1.4
Liver intron excision ratio 0 0.000 1.4
Liver mRNA stability 3 0.122 1.4
NAcc alternative polyA 0 0.000 1.5
NAcc alternative TSS 0 0.000 1.3
NAcc gene expression 1 0.016 1.4
NAcc isoform ratio 0 0.000 1.4
NAcc intron excision ratio 0 0.000 1.3
NAcc mRNA stability 0 0.000 1.5
OFC alternative polyA 0 0.000 1.4
OFC alternative TSS 0 0.000 1.2
OFC gene expression 0 0.000 1.4
OFC isoform ratio 0 0.000 1.4
OFC intron excision ratio 0 0.000 1.4
OFC mRNA stability 0 0.000 1.5
PL alternative polyA 0 0.000 1.5
PL alternative TSS 0 0.000 1.3
PL gene expression 1 0.014 1.4
PL isoform ratio 2 0.090 1.5
PL intron excision ratio 0 0.000 1.3
PL mRNA stability 1 0.034 1.4

avg chisq: Average Chi2 (squared Z-score) across all models in this panel for this trait.