Zmat5

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL mRNA stability Zmat5 0.05 0.03 1.0e-04 0.01 0.04 0.03 0.03 2.5e-02 7.9e-05 3.7e-04 4.6e-04
2 Brain alternative TSS XM_006251427.4 0.03 0.02 7.5e-03 0.01 0.02 0.01 0 3.3e-02 5.9e-03 3.0e-02 2.5e-01
3 Brain mRNA stability Zmat5 0.04 0.03 2.0e-03 0.01 0.01 0.01 0 7.5e-02 2.5e-02 3.7e-02 1.6e-01
4 Liver mRNA stability Zmat5 0.04 0.03 1.1e-04 0.04 0.03 0.02 0.03 8.6e-05 2.1e-04 1.0e-03 1.8e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.50.91.21.10.80.9-0.9
Area under the delay curve0.80.82.1-1.40.70.70.2
BMI with tail0.00.00.1-0.0-0.3-0.30.0
BMI without tail0.51.01.10.91.01.0-1.1
Body weight0.41.52.5-1.11.61.6-0.3
Weight adjusted by age1.11.21.90.21.41.4-1.0
Bone surface0.10.20.3-0.10.60.6-0.3
Bone volume0.20.40.60.20.80.8-0.6
Breakpoint value in progressive ratio session0.40.51.1-1.00.70.60.2
Number of licking bursts1.01.12.0-0.81.41.4-0.2
Context. condit. distance diff. score0.91.12.01.4-1.0-1.0-0.3
Locomotion velocity, session 13.23.44.5-1.5-1.9-1.92.1
Locomotion distance, session 10.60.81.51.20.50.5-1.0
Locomotion velocity, session 22.83.23.8-1.4-1.9-2.01.8
Locomotion distance, session 20.91.22.20.5-1.5-1.50.4
Locomotion velocity, session 30.80.92.61.6-0.4-0.4-0.9
Locomotion distance, session 30.00.00.1-0.1-0.1-0.2-0.3
Stereotopy head waving bouts, day 30.30.30.80.9-0.1-0.1-0.6
Stereotopy head waving duration, day 30.30.40.70.8-0.7-0.7-0.0
Locomotion velocity, session 70.10.10.3-0.5-0.1-0.10.2
Locomotion distance, session 70.30.40.60.0-0.8-0.80.5
Stereotopy head waving bouts, day 70.10.10.20.4-0.2-0.2-0.1
Stereotopy head waving duration, day 70.30.40.60.60.60.6-0.8
Locomotion velocity, session 81.82.13.8-0.1-1.9-2.01.0
Locomotion distance, session 81.92.84.42.1-1.8-1.8-0.2
Degree of sensitization distance0.80.81.30.4-1.1-1.10.9
Degree of sensitization stereotypy0.10.10.20.00.40.5-0.1
Conditioned locomotion1.11.32.71.60.50.5-1.4
Cocaine response after cond. corrected0.60.71.1-0.81.01.00.0
Cocaine response after cond. not corrected1.21.32.4-0.51.61.5-0.5
Cocaine response before conditioning0.20.20.40.70.20.2-0.6
Saline control response0.50.71.30.2-1.1-1.20.4
Bone: connectivity density0.40.61.11.00.50.6-0.8
Bone: cortical apparent density0.30.40.6-0.40.80.8-0.1
Bone: cortical area0.81.21.9-1.21.41.3-0.2
Bone: cortical porosity0.50.50.80.50.80.9-0.7
Bone: cortical porosity0.20.20.40.70.30.3-0.4
Bone: cortical thickness1.32.13.6-0.31.91.9-1.1
Bone: cortical thickness1.61.82.61.61.11.1-1.5
Bone: cortical tissue density0.20.30.5-0.50.70.7-0.0
Condit. Reinf. active minus inactive responses1.51.72.6-1.5-1.0-1.01.6
Condit. Reinf. active-inactive response ratio5.25.77.1-1.8-2.5-2.52.7
Condit. Reinf. active responses0.50.60.9-0.9-0.6-0.60.9
Condit. Reinf. inactive responses1.01.11.50.61.21.2-1.2
Incentive salience index mean0.70.91.8-1.3-0.5-0.61.1
Condit. Reinf. lever presses0.00.10.1-0.20.20.2-0.3
Condit. Reinf. active minus inactive responses0.20.20.30.6-0.5-0.50.2
Condit. Reinf. active-inactive response ratio0.10.10.20.0-0.4-0.40.4
Condit. Reinf. active responses0.30.40.60.4-0.8-0.80.4
Condit. Reinf. inactive responses0.40.40.70.3-0.8-0.80.5
Condit. Reinf. lever presses0.20.20.60.8-0.3-0.3-0.3
Condit. Reinf. lever reinforcers received0.20.30.50.5-0.7-0.70.3
Conditioned reinforcement - actives0.40.40.4-0.7-0.6-0.70.4
Conditioned reinforcement - inactives0.20.20.3-0.5-0.4-0.40.5
Conditioned locomotion0.10.10.2-0.10.40.4-0.4
Patch foraging indifference point 0 sec0.61.01.6-0.91.31.2-0.1
Patch foraging indifference point AUC0.10.10.3-0.6-0.2-0.20.4
Delay disc. indifference point, 0s delay0.30.30.4-0.50.70.7-0.2
Delay disc. indifference point, 16s delay1.61.64.4-2.1-0.4-0.41.3
Delay disc. indifference point, 2s delay1.61.82.70.21.61.6-1.3
Delay disc. indifference point, 24s delay0.80.71.8-1.4-0.4-0.40.9
Delay disc. indifference point, 4s delay1.31.42.4-0.71.51.5-0.6
Delay disc. indifference point, 8s delay0.30.41.2-1.10.10.10.5
Indifference point function ln k0.50.80.90.80.80.9-0.9
Indifference point function log k0.50.80.90.80.80.9-0.9
Patch foraging total patch changes 0 sec0.50.81.2-1.11.01.00.1
Patch foraging total patch changes 12 sec0.30.40.7-0.80.70.70.1
Patch foraging total patch changes 18 sec1.62.04.3-2.1-0.6-0.61.8
Patch foraging total patch changes 24 sec0.91.11.6-0.1-1.3-1.21.0
Patch foraging total patch changes 6 sec0.40.51.5-1.20.50.50.4
Patch foraging time to switch 0 sec0.10.10.30.6-0.2-0.2-0.2
Patch foraging water rate 0 sec0.50.72.2-1.50.30.20.8
Patch foraging water rate 12 sec0.00.00.00.00.10.1-0.0
Patch foraging water rate 18 sec2.63.54.21.62.02.1-1.8
Patch foraging water rate 24 sec0.50.71.2-0.8-0.7-0.71.1
Patch foraging water rate 6 sec0.30.50.9-0.00.90.9-0.4
Seeking ratio, delayed vs. immediate footshock0.00.10.1-0.0-0.3-0.30.2
Distance traveled before self-admin1.41.42.00.51.41.4-1.2
Distance traveled after self-admin1.01.11.50.51.11.1-1.2
Extensor digitorum longus weight0.93.55.3-1.82.32.3-0.2
Bone: elastic displacement1.01.11.91.40.80.8-1.2
Bone: elastic work1.72.22.81.11.61.7-1.4
Bone: endosteal estimation0.00.10.2-0.30.40.40.0
Bone: endosteal perimeter0.20.41.0-1.00.40.40.3
Epididymis fat weight0.61.52.71.50.60.7-1.6
Delta time in closed arm before/after self-admin1.51.54.52.1-0.6-0.5-0.9
Delta time in open arm before/after self-admin2.42.37.0-2.60.80.71.1
Diff in mean of infusions in LGA sessions0.10.20.30.50.20.3-0.4
Delay discount exponential model param0.70.71.71.3-0.8-0.7-0.2
Extinction: sum of active levers before priming0.90.91.5-1.2-0.8-0.80.9
Active lever presses in extinction session 60.50.50.70.00.80.8-0.7
Bone: final force0.10.20.3-0.30.50.5-0.1
Bone: final moment0.20.40.7-0.30.80.8-0.3
Food consumed during 24 hour testing period1.41.73.9-2.0-0.6-0.61.5
Glucose16.324.549.4-7.0-2.8-2.95.7
Heart weight1.01.42.3-0.2-1.5-1.51.1
Delay discount hyperbolic model param0.70.71.61.2-0.9-0.8-0.1
Intermittent access intake day 1-15 change1.61.61.7-1.3-1.2-1.31.3
Intermittent access intake escalation1.21.21.3-1.0-1.1-1.21.1
Intermittent access intake escalation 20.50.50.5-0.6-0.7-0.70.7
Intermitt. access day 1 inactive lever presses0.60.61.00.5-1.0-0.90.6
Intermitt. access day 15 inactive lever presses2.42.63.9-1.7-1.3-1.32.0
Intermitt. access escalation Index0.50.40.7-0.5-0.6-0.50.9
Intermittent access day 1 total infusions0.10.20.20.20.40.4-0.5
Intermittent access day 15 total infusions0.30.30.8-0.9-0.3-0.30.5
Intermittent access terminal intake (last 3 days)0.20.20.6-0.8-0.2-0.20.4
Intermittent access total infusions0.10.10.1-0.30.30.2-0.2
Intermittent access day 1 locomotion0.10.10.40.70.00.0-0.3
Intermittent access day 15 total locomotion0.50.61.0-1.0-0.5-0.50.9
Intermittent access total locomotion0.20.20.6-0.8-0.0-0.00.4
Intermittent access standard deviation0.30.30.60.8-0.6-0.6-0.2
Left kidney weight0.51.31.51.11.21.2-1.0
Right kidney weight1.23.46.02.51.41.5-1.9
Cocaine induced anxiety0.70.82.9-1.70.30.20.6
Post-drug Anxiety0.70.71.9-1.4-0.3-0.40.9
Baseline Anxiety0.80.91.3-0.3-1.1-1.11.0
Tail length2.06.010.70.33.23.3-1.7
Length with tail0.93.46.2-1.12.52.5-0.5
Length without tail0.51.13.2-1.80.0-0.01.0
Times rat made contact with spout3.33.84.2-1.7-2.0-2.12.0
Lifetime Intake0.20.30.4-0.20.60.6-0.5
Liver weight, left2.54.06.92.61.61.7-1.9
Liver weight, right1.93.27.52.70.91.0-1.9
Locomotor activity0.61.02.1-1.4-0.4-0.41.2
Locomotor testing distance0.91.52.20.51.51.5-1.2
Locomotor testing rearing0.40.61.6-1.30.60.60.2
Locomotion in novel chamber1.21.54.42.1-0.4-0.3-1.2
Locomotion in novel chamber post-restriction2.63.15.40.3-2.3-2.31.3
Fecal boli incidents, locomotor time 10.10.10.20.1-0.5-0.50.3
Change in fecal boli incidents, locomotor task1.00.91.3-0.9-0.9-0.91.1
Time >=10cm from walls, locomotor time 10.00.00.0-0.0-0.2-0.20.2
Bouts of movement, locomotor time 11.61.72.6-1.5-1.0-1.01.6
Total resting periods, locomotor time 12.32.53.5-1.5-1.5-1.51.9
Rest time, locomotor task time 10.80.81.1-0.7-0.9-0.91.0
Distance moved, locomotor task time 11.21.41.80.61.31.4-1.2
Vertical activity count, locomotor time 10.50.50.70.20.80.8-0.7
Time >=10cm from walls, locomotor time 20.10.10.1-0.3-0.4-0.40.4
Bouts of movement, locomotor time 20.00.00.10.10.20.2-0.0
Total resting periods, locomotor time 20.00.00.0-0.10.10.00.2
Rest time, locomotor task time 20.10.10.2-0.0-0.4-0.40.3
Distance moved, locomotor task time 20.00.00.00.1-0.2-0.20.1
Vertical activity count, locomotor time 20.00.00.00.10.10.1-0.1
Light reinforcement 10.50.91.30.31.01.0-1.1
Light reinforcement 21.01.42.10.51.41.4-1.1
Bone: marrow area0.00.10.1-0.30.30.30.1
Bone: maximum diameter1.32.57.7-2.80.30.21.4
Bone: maximum force0.20.40.7-0.10.90.8-0.5
Bone: maximum moment0.50.81.4-0.01.21.2-0.6
Mean time between licks in bursts2.02.84.6-1.8-1.3-1.32.1
Mean num. licks in bursts3.34.06.8-0.5-2.6-2.61.6
Cd content in liver0.20.20.40.60.30.3-0.6
Co content in liver0.10.10.30.20.10.1-0.5
Cu content in liver0.10.10.3-0.50.10.10.3
Fe content in liver3.23.95.4-1.0-2.3-2.31.9
K content in liver2.62.53.60.51.91.8-1.7
Mg content in liver0.30.30.6-0.10.50.5-0.7
Mn content in liver2.42.83.91.01.81.7-2.0
Na content in liver1.71.85.2-2.3-0.2-0.31.3
Rb content in liver1.31.62.7-0.91.61.6-0.7
Se content in liver0.60.71.1-0.61.01.0-0.6
Sr content in liver1.31.22.7-1.6-0.5-0.51.3
Zn content in liver0.20.20.3-0.20.60.5-0.5
Bone: minimum diameter0.10.30.40.30.60.6-0.5
Time in familiar zone, hab. session 10.10.10.20.40.00.0-0.3
Time in novel zone, hab. session 10.40.40.7-0.10.80.8-0.4
Total zone transitions, hab. session 10.00.00.0-0.1-0.1-0.10.2
Total locomotion distance, hab. session 10.10.20.2-0.10.50.4-0.4
Locomotion velocity, hab. session 10.00.10.1-0.4-0.2-0.30.2
Time in familiar zone, hab. session 20.30.40.70.8-0.6-0.60.2
Time in novel zone, hab. session 20.50.50.8-0.90.80.8-0.3
Total zone transitions, hab. session 20.10.20.6-0.80.20.20.1
Total locomotion distance, hab. session 20.30.41.3-1.2-0.2-0.30.6
Locomotion velocity, hab. session 20.30.41.4-1.2-0.0-0.10.5
Novel to familiar place preference ratio1.21.22.4-1.5-0.7-0.71.3
Novelty place preference1.21.22.4-1.5-0.6-0.71.3
Time in novel zone, NPP test1.11.12.2-1.5-0.6-0.61.2
Total zone transitions, NPP test0.50.71.21.10.40.4-1.1
Total locomotion distance, NPP test0.10.10.30.50.20.1-0.6
Locomotion velocity, NPP test0.10.10.20.30.20.2-0.4
Intraocular pressure0.91.21.7-1.3-0.9-0.91.3
Delta distance traveled before/after self-admin0.30.30.60.2-0.7-0.70.3
Delta ambulatory time before/after self-admin0.30.40.60.5-0.8-0.80.1
Parametrial fat weight2.24.37.5-2.7-1.2-1.22.6
Pavlov. Cond. lever latency0.50.71.3-1.1-0.4-0.41.0
Pavlov. Cond. magazine entry latency0.60.82.01.4-0.6-0.6-0.7
Pavlov. Cond. change in total contacts0.10.10.5-0.70.10.00.2
Pavlov. Cond. index score0.70.92.41.6-0.5-0.5-0.9
Pavlov. Cond. latency score0.60.82.21.5-0.3-0.3-0.8
Pavlov. Cond. lever contacts0.40.41.11.0-0.2-0.2-0.7
Pavlov. Cond. magazine entry number0.70.91.4-1.21.01.00.4
Pavlov. Cond. intertrial magazine entries1.41.83.00.41.71.7-1.0
Pavlov. Cond. lever-magazine prob. diff.0.81.02.71.7-0.5-0.5-0.9
Pavlov. Cond. response bias0.50.61.31.1-0.5-0.5-0.8
Pavlov. Cond. lever latency2.63.56.3-0.62.52.5-1.1
Pavlov. Cond. magazine entry latency0.10.10.20.40.10.1-0.2
Pavlov. Cond. change in total contacts0.20.30.50.0-0.7-0.70.6
Pavlov. Cond. index score0.60.81.40.6-1.2-1.10.4
Pavlov. Cond. latency score0.50.61.00.7-1.0-1.00.2
Pavlov. Cond. lever contacts2.12.95.00.5-2.2-2.21.2
Pavlov. Cond. magazine entry number0.20.20.40.10.60.6-0.4
Pavlov. Cond. intertrial magazine entries0.00.00.0-0.2-0.2-0.20.1
Pavlov. Cond. lever-magazine prob. diff.0.40.60.90.7-0.9-0.90.2
Pavlov. Cond. response bias1.31.83.10.1-1.8-1.71.1
Time in closed arm before self-admin0.70.71.30.01.21.1-0.6
Time in closed arm after self-admin1.01.03.01.70.20.2-1.0
Time in open arm before self-admin0.80.81.31.0-1.1-1.1-0.1
Time in open arm after self-admin1.82.02.7-1.6-1.2-1.21.6
Bone: periosteal estimation0.40.71.1-0.91.01.0-0.1
Bone: periosteal perimeter0.50.81.5-1.20.90.90.2
Bone: post-yield work0.00.10.1-0.40.20.2-0.0
Progressive ratio test 1 active lever presses0.20.20.4-0.6-0.4-0.40.4
Progressive ratio test 1 breakpoint0.10.10.2-0.2-0.4-0.40.2
Progressive ratio test 1 inactive lever presses0.40.51.4-1.20.40.40.4
Progressive ratio test 2 active lever presses0.10.10.2-0.5-0.1-0.10.1
Progressive ratio test 2 breakpoint0.20.20.4-0.7-0.3-0.30.2
Progressive ratio test 2 inactive lever presses1.21.42.5-1.6-0.8-0.91.2
Incentive Sensitization - Responses0.30.30.3-0.6-0.5-0.50.6
Incentive Sensitization - Breakpoint0.30.30.3-0.5-0.5-0.50.5
Sum of active levers in priming session hrs 5-60.10.10.2-0.50.10.10.0
Progressive ratio0.20.20.40.40.40.4-0.6
Food seeking constrained by brief footshock3.03.65.80.32.42.4-1.7
Seeking ratio, punishment vs. effort0.40.50.9-0.30.90.9-0.3
Retroperitoneal fat weight0.20.50.7-0.4-0.8-0.90.7
Reaction time number correct0.30.40.5-0.6-0.7-0.70.6
Reaction time mean minus median1.92.54.4-0.0-2.1-2.01.2
Reaction time mean minus median AUC0.60.81.50.4-1.2-1.20.2
Reaction time num false alarms0.60.91.30.51.01.0-1.2
Reaction time num false alarms AUC1.21.72.40.91.31.3-1.6
Reaction time trials correct on left0.30.40.5-0.6-0.7-0.70.6
Reaction time trials on left0.30.40.5-0.6-0.7-0.70.6
Reaction time mean0.50.71.30.3-1.1-1.10.5
Reaction time mean AUC0.40.61.00.6-1.0-1.00.2
Median of all reaction times0.20.30.50.3-0.7-0.70.3
Reaction time omissions0.40.51.01.0-0.7-0.7-0.3
Reaction time false alarm rate1.82.63.31.21.71.7-1.8
Reaction time premature initiation rate1.41.95.12.30.30.3-1.5
Reaction time premature initiations0.50.82.21.5-0.0-0.1-0.9
Std. dev. reaction times1.52.13.8-0.0-1.9-1.91.1
Reaction time trials completed0.30.40.5-0.6-0.7-0.70.6
Reaction time trials AUC0.20.30.4-0.6-0.5-0.50.6
Run reversals in cocaine runway, females0.30.30.60.5-0.7-0.70.1
Run reversals in cocaine runway, males0.20.20.3-0.30.60.6-0.1
Latency to leave start box in cocaine runway0.40.50.70.50.70.7-0.8
Latency to leave start box in cocaine runway, F1.01.11.60.41.31.3-1.0
Latency to leave start box in cocaine runway, M0.20.20.30.3-0.5-0.50.0
Std. dev. time between licks in bursts0.10.10.2-0.1-0.3-0.20.5
Total sessions with >9 infusions0.60.61.20.50.80.7-1.1
Short access day 1 total inactive lever presses1.71.93.3-0.81.81.8-0.7
Short access day 10 total inactive lever presses0.10.20.60.8-0.1-0.0-0.1
Short access day 1 total infusions1.01.01.80.90.90.9-1.3
Short access day 10 total infusions0.60.60.90.60.80.8-0.9
Short access total infusions1.31.52.31.01.11.1-1.5
Short access day 1 locomotion2.83.04.82.01.21.3-2.2
Short access day 10 total locomotion0.70.81.01.00.70.7-1.0
Short access total locomotion2.32.44.62.10.80.8-1.9
One hour access (0.3 mA shock)0.00.00.1-0.40.10.0-0.2
Compulsive drug intake0.70.72.21.5-0.3-0.3-0.6
One hour access (shock baseline)0.40.51.9-1.40.0-0.00.4
Social response proportion2.72.94.5-2.1-1.2-1.22.0
Social responses2.02.65.1-2.3-0.9-1.01.9
Social time0.81.11.6-1.0-0.9-0.91.3
Soleus weight0.92.75.0-0.02.22.2-1.0
Bone: stiffness0.00.00.0-0.1-0.0-0.00.1
Tibialis anterior weight0.20.82.2-1.50.60.60.6
Time to tail flick, vehicle, before self-admin0.10.10.20.40.20.2-0.3
Time to tail flick, vehicle, after self-admin0.30.30.40.60.50.6-0.4
Time to tail flick, test, before self-admin0.10.10.30.6-0.0-0.0-0.3
Time to tail flick, test, after self-admin1.51.52.8-0.41.71.6-0.7
Delta time to tail flick, vehicle, before/after SA0.00.00.10.00.20.2-0.0
Delta time to tail flick, test, before/after SA0.30.30.7-0.80.40.40.3
Tibia length1.02.93.41.51.81.8-1.7
Ambulatory time before self-admin2.82.94.20.62.12.0-1.7
Ambulatory time after self-admin0.91.01.30.41.11.1-1.1
Bone: tissue strength0.10.10.3-0.3-0.1-0.10.5
Total heroin consumption0.10.10.1-0.20.30.30.0
Bone: trabecular number0.71.11.21.01.11.1-1.0
Bone: trabecular spacing0.50.61.9-1.4-0.2-0.20.7
Bone: trabecular thickness1.31.63.41.80.70.8-1.3
Bone: trabecular tissue density1.21.62.3-0.6-1.5-1.51.3
Water consumed over 24 hours1.21.53.0-1.7-0.6-0.71.4
Number of responses in last shaping day0.40.41.00.40.50.4-1.0