Zfp790

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Eye mRNA stability Zfp790 0.52 0.25 2.8e-04 0.08 0.04 0.02 0.03 2.1e-02 9.5e-02 1.5e-01 1.0e-01
2 Liver gene expression Zfp790 0.04 0.03 7.8e-04 0.03 0 0.03 0.02 3.8e-04 9.2e-02 8.2e-04 5.0e-03
3 Eye gene expression Zfp790 0.56 0.26 2.1e-03 0.06 0.04 0.02 0 4.3e-02 9.6e-02 1.8e-01 3.1e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.30.51.2-1.10.2-0.6
Area under the delay curve0.91.01.4-0.7-1.1-1.2
BMI with tail0.10.30.70.50.90.2
BMI without tail0.51.62.7-1.0-1.1-1.6
Body weight2.511.114.2-3.8-2.9-3.3
Weight adjusted by age0.00.00.1-0.20.10.3
Bone surface0.91.73.2-1.8-0.8-1.2
Bone volume1.01.82.9-1.7-1.0-1.2
Breakpoint value in progressive ratio session2.22.64.0-1.1-1.6-2.0
Number of licking bursts2.84.55.82.31.62.4
Context. condit. distance diff. score0.10.10.30.20.6-0.0
Locomotion velocity, session 10.80.81.00.91.00.8
Locomotion distance, session 10.40.50.6-0.6-0.7-0.7
Locomotion velocity, session 20.60.71.60.61.30.5
Locomotion distance, session 21.52.12.31.41.51.4
Locomotion velocity, session 30.30.30.40.50.60.6
Locomotion distance, session 34.24.65.4-2.0-2.3-2.1
Stereotopy head waving bouts, day 31.01.11.60.61.21.2
Stereotopy head waving duration, day 32.22.63.71.21.91.7
Locomotion velocity, session 70.20.20.3-0.6-0.1-0.5
Locomotion distance, session 70.10.10.2-0.5-0.3-0.3
Stereotopy head waving bouts, day 71.21.31.81.40.61.3
Stereotopy head waving duration, day 71.72.12.71.61.11.5
Locomotion velocity, session 84.65.66.82.32.62.2
Locomotion distance, session 80.81.21.71.11.30.9
Degree of sensitization distance1.41.52.60.91.61.1
Degree of sensitization stereotypy0.70.81.31.2-0.11.0
Conditioned locomotion0.20.20.50.70.20.4
Cocaine response after cond. corrected0.10.10.20.1-0.5-0.1
Cocaine response after cond. not corrected0.00.00.0-0.0-0.2-0.2
Cocaine response before conditioning0.70.91.6-1.2-0.2-1.0
Saline control response0.00.00.00.2-0.2-0.1
Bone: connectivity density0.30.50.7-0.80.8-0.2
Bone: cortical apparent density2.02.83.31.81.51.7
Bone: cortical area1.82.83.2-1.7-1.8-1.5
Bone: cortical porosity1.61.72.70.71.71.4
Bone: cortical porosity1.92.12.61.01.61.6
Bone: cortical thickness0.71.11.6-1.0-1.2-0.9
Bone: cortical thickness0.60.81.00.80.81.0
Bone: cortical tissue density2.33.13.61.91.61.8
Condit. Reinf. active minus inactive responses0.30.30.50.60.70.3
Condit. Reinf. active-inactive response ratio0.20.20.40.30.60.2
Condit. Reinf. active responses2.12.73.31.81.61.4
Condit. Reinf. inactive responses2.02.53.61.91.21.5
Incentive salience index mean0.20.20.40.50.60.1
Condit. Reinf. lever presses0.00.10.20.0-0.0-0.4
Condit. Reinf. active minus inactive responses2.53.34.0-1.4-2.0-2.0
Condit. Reinf. active-inactive response ratio0.40.41.00.4-1.0-0.4
Condit. Reinf. active responses4.46.26.9-2.4-2.4-2.6
Condit. Reinf. inactive responses3.85.07.3-2.7-1.7-2.2
Condit. Reinf. lever presses9.112.613.1-3.5-3.6-3.6
Condit. Reinf. lever reinforcers received4.86.77.4-2.4-2.6-2.7
Conditioned reinforcement - actives0.61.11.71.30.51.1
Conditioned reinforcement - inactives0.20.20.4-0.3-0.6-0.4
Conditioned locomotion3.24.14.72.02.21.9
Patch foraging indifference point 0 sec0.10.20.6-0.8-0.3-0.1
Patch foraging indifference point AUC0.50.71.30.70.51.1
Delay disc. indifference point, 0s delay0.70.81.30.1-1.2-1.1
Delay disc. indifference point, 16s delay2.52.83.9-1.1-2.0-1.8
Delay disc. indifference point, 2s delay0.91.01.1-0.9-1.0-1.0
Delay disc. indifference point, 24s delay2.73.13.1-1.7-1.8-1.7
Delay disc. indifference point, 4s delay0.20.20.3-0.0-0.5-0.5
Delay disc. indifference point, 8s delay0.10.20.3-0.60.3-0.3
Indifference point function ln k0.40.61.0-0.4-0.8-1.0
Indifference point function log k0.40.61.0-0.4-0.8-1.0
Patch foraging total patch changes 0 sec0.20.40.8-0.9-0.5-0.3
Patch foraging total patch changes 12 sec0.10.10.2-0.4-0.4-0.1
Patch foraging total patch changes 18 sec0.20.30.8-0.00.40.9
Patch foraging total patch changes 24 sec0.71.22.0-1.1-1.4-0.6
Patch foraging total patch changes 6 sec0.10.20.4-0.70.10.3
Patch foraging time to switch 0 sec0.40.91.61.01.30.2
Patch foraging water rate 0 sec0.61.22.60.60.91.6
Patch foraging water rate 12 sec0.40.91.8-0.8-1.4-0.4
Patch foraging water rate 18 sec0.20.30.70.40.20.8
Patch foraging water rate 24 sec0.20.20.50.1-0.70.4
Patch foraging water rate 6 sec0.60.91.5-1.2-1.0-0.5
Seeking ratio, delayed vs. immediate footshock1.41.72.1-1.2-1.4-1.3
Distance traveled before self-admin0.70.92.10.1-1.4-0.9
Distance traveled after self-admin2.02.53.0-1.6-1.7-1.3
Extensor digitorum longus weight0.20.71.00.81.00.7
Bone: elastic displacement0.00.00.10.0-0.00.4
Bone: elastic work1.92.53.2-1.5-1.8-1.4
Bone: endosteal estimation1.63.64.2-2.0-1.9-1.7
Bone: endosteal perimeter1.63.43.7-1.7-1.9-1.9
Epididymis fat weight0.00.00.10.10.10.3
Delta time in closed arm before/after self-admin0.80.71.5-1.2-0.6-0.6
Delta time in open arm before/after self-admin0.20.20.40.40.30.7
Diff in mean of infusions in LGA sessions0.20.20.50.7-0.0-0.2
Delay discount exponential model param1.01.11.30.91.11.2
Extinction: sum of active levers before priming3.43.75.4-1.9-1.5-2.3
Active lever presses in extinction session 61.41.42.1-1.2-0.8-1.4
Bone: final force1.93.03.2-1.8-1.7-1.7
Bone: final moment2.64.24.4-2.1-2.1-2.0
Food consumed during 24 hour testing period0.60.81.0-1.0-0.7-0.9
Glucose0.20.40.60.7-0.10.8
Heart weight0.10.10.2-0.3-0.4-0.4
Delay discount hyperbolic model param0.70.81.00.70.91.0
Intermittent access intake day 1-15 change0.71.51.8-1.3-1.3-1.1
Intermittent access intake escalation0.50.91.1-1.0-1.0-0.8
Intermittent access intake escalation 21.41.62.5-0.9-1.6-1.2
Intermitt. access day 1 inactive lever presses2.07.58.5-2.6-2.7-2.9
Intermitt. access day 15 inactive lever presses0.81.71.7-1.3-1.2-1.3
Intermitt. access escalation Index0.10.10.30.6-0.20.2
Intermittent access day 1 total infusions1.42.23.41.81.21.3
Intermittent access day 15 total infusions0.10.10.40.6-0.10.1
Intermittent access terminal intake (last 3 days)0.30.41.01.0-0.50.1
Intermittent access total infusions0.60.71.51.20.30.6
Intermittent access day 1 locomotion0.50.61.41.20.40.6
Intermittent access day 15 total locomotion0.10.10.10.40.40.2
Intermittent access total locomotion1.01.22.11.50.80.9
Intermittent access standard deviation2.34.85.6-2.0-2.4-2.2
Left kidney weight1.57.19.9-3.1-2.2-2.5
Right kidney weight2.19.712.1-3.5-2.6-3.2
Cocaine induced anxiety0.00.10.1-0.10.4-0.1
Post-drug Anxiety0.10.10.10.1-0.4-0.2
Baseline Anxiety0.10.20.4-0.2-0.6-0.2
Tail length5.421.022.4-4.5-4.7-4.5
Length with tail6.829.633.0-5.7-5.4-5.1
Length without tail2.47.811.1-3.3-2.5-2.4
Times rat made contact with spout1.41.62.31.01.21.5
Lifetime Intake0.81.01.91.40.50.8
Liver weight, left0.40.61.00.90.21.0
Liver weight, right0.10.20.40.7-0.10.5
Locomotor activity0.71.01.70.51.31.1
Locomotor testing distance0.81.41.90.81.41.2
Locomotor testing rearing1.93.84.51.72.12.0
Locomotion in novel chamber0.10.20.30.40.5-0.2
Locomotion in novel chamber post-restriction0.30.61.10.1-0.7-1.0
Fecal boli incidents, locomotor time 11.82.74.32.11.41.3
Change in fecal boli incidents, locomotor task0.10.10.1-0.40.3-0.1
Time >=10cm from walls, locomotor time 10.00.00.00.2-0.1-0.1
Bouts of movement, locomotor time 11.21.42.7-0.6-1.6-1.0
Total resting periods, locomotor time 11.21.32.5-0.4-1.6-1.1
Rest time, locomotor task time 10.60.82.01.40.00.5
Distance moved, locomotor task time 10.10.10.2-0.30.30.5
Vertical activity count, locomotor time 10.71.83.5-1.9-0.7-1.2
Time >=10cm from walls, locomotor time 20.50.71.71.3-0.10.7
Bouts of movement, locomotor time 20.00.00.00.2-0.2-0.2
Total resting periods, locomotor time 20.00.00.10.2-0.1-0.0
Rest time, locomotor task time 20.10.20.30.5-0.50.2
Distance moved, locomotor task time 20.30.30.50.10.60.7
Vertical activity count, locomotor time 20.50.71.2-1.1-0.5-0.9
Light reinforcement 10.10.30.60.30.40.8
Light reinforcement 23.14.86.91.92.62.0
Bone: marrow area1.73.64.3-2.1-1.9-1.7
Bone: maximum diameter1.42.52.8-1.7-1.5-1.5
Bone: maximum force3.46.07.1-2.4-2.7-2.3
Bone: maximum moment4.27.38.7-2.6-3.0-2.6
Mean time between licks in bursts0.00.10.1-0.2-0.1-0.3
Mean num. licks in bursts0.71.11.5-1.2-0.5-1.2
Cd content in liver0.40.40.60.60.60.8
Co content in liver0.60.61.40.41.20.6
Cu content in liver0.91.11.6-1.3-1.1-0.7
Fe content in liver0.20.30.50.50.70.3
K content in liver0.20.20.3-0.5-0.5-0.5
Mg content in liver0.10.10.30.30.30.5
Mn content in liver0.40.50.90.70.30.9
Na content in liver1.41.51.9-1.0-1.4-1.3
Rb content in liver0.10.10.20.40.30.3
Se content in liver4.85.76.32.42.22.5
Sr content in liver0.40.30.80.10.90.4
Zn content in liver3.13.55.51.02.32.0
Bone: minimum diameter4.58.28.9-2.6-3.0-3.0
Time in familiar zone, hab. session 10.20.20.3-0.6-0.4-0.4
Time in novel zone, hab. session 10.70.71.11.00.50.9
Total zone transitions, hab. session 10.10.20.40.2-0.6-0.1
Total locomotion distance, hab. session 12.02.94.7-1.3-2.2-1.5
Locomotion velocity, hab. session 11.11.62.3-1.0-1.5-1.2
Time in familiar zone, hab. session 22.12.23.0-1.7-1.1-1.6
Time in novel zone, hab. session 21.41.52.01.40.81.3
Total zone transitions, hab. session 22.02.64.12.01.11.6
Total locomotion distance, hab. session 20.00.00.10.2-0.30.1
Locomotion velocity, hab. session 20.00.10.10.3-0.00.3
Novel to familiar place preference ratio0.50.61.4-0.4-1.2-0.4
Novelty place preference0.40.51.2-0.3-1.1-0.2
Time in novel zone, NPP test0.20.20.7-0.0-0.9-0.0
Total zone transitions, NPP test0.10.20.20.40.30.5
Total locomotion distance, NPP test2.43.23.6-1.8-1.9-1.7
Locomotion velocity, NPP test2.73.84.3-1.9-2.1-1.8
Intraocular pressure0.00.10.10.4-0.20.0
Delta distance traveled before/after self-admin1.41.43.6-1.9-0.3-0.8
Delta ambulatory time before/after self-admin1.01.33.4-1.9-0.3-0.5
Parametrial fat weight0.30.60.90.21.00.9
Pavlov. Cond. lever latency0.00.00.0-0.1-0.0-0.2
Pavlov. Cond. magazine entry latency0.60.71.20.90.31.1
Pavlov. Cond. change in total contacts0.10.10.20.50.10.3
Pavlov. Cond. index score0.30.40.60.60.40.8
Pavlov. Cond. latency score0.10.10.20.40.30.4
Pavlov. Cond. lever contacts0.20.20.3-0.3-0.6-0.4
Pavlov. Cond. magazine entry number0.40.50.8-0.8-0.1-0.9
Pavlov. Cond. intertrial magazine entries0.70.81.31.11.00.4
Pavlov. Cond. lever-magazine prob. diff.0.50.61.00.80.41.0
Pavlov. Cond. response bias0.20.20.40.5-0.10.6
Pavlov. Cond. lever latency5.47.37.62.72.62.8
Pavlov. Cond. magazine entry latency3.94.75.6-2.1-2.0-2.4
Pavlov. Cond. change in total contacts7.612.213.7-3.3-3.4-3.7
Pavlov. Cond. index score6.18.29.1-2.8-2.8-3.0
Pavlov. Cond. latency score5.57.48.2-2.7-2.6-2.9
Pavlov. Cond. lever contacts5.98.18.7-2.8-2.8-2.9
Pavlov. Cond. magazine entry number4.15.05.92.22.12.4
Pavlov. Cond. intertrial magazine entries1.62.43.71.01.61.9
Pavlov. Cond. lever-magazine prob. diff.5.87.78.3-2.7-2.7-2.9
Pavlov. Cond. response bias6.89.310.1-3.0-3.0-3.2
Time in closed arm before self-admin1.11.42.51.60.71.1
Time in closed arm after self-admin0.40.40.8-0.0-0.6-0.9
Time in open arm before self-admin3.13.35.3-2.3-1.2-1.8
Time in open arm after self-admin0.70.81.8-1.3-0.6-0.5
Bone: periosteal estimation2.45.05.5-2.4-2.3-2.0
Bone: periosteal perimeter2.23.74.7-1.6-2.2-2.0
Bone: post-yield work2.43.64.1-1.9-2.0-1.8
Progressive ratio test 1 active lever presses0.00.00.10.30.2-0.1
Progressive ratio test 1 breakpoint0.00.00.10.20.0-0.2
Progressive ratio test 1 inactive lever presses0.20.30.6-0.1-0.8-0.5
Progressive ratio test 2 active lever presses0.50.61.51.20.50.5
Progressive ratio test 2 breakpoint0.70.81.81.30.50.6
Progressive ratio test 2 inactive lever presses0.81.22.0-0.1-1.3-1.4
Incentive Sensitization - Responses0.71.02.11.40.50.8
Incentive Sensitization - Breakpoint0.81.02.01.40.50.8
Sum of active levers in priming session hrs 5-60.20.20.40.30.6-0.0
Progressive ratio0.00.00.00.10.1-0.1
Food seeking constrained by brief footshock3.24.04.5-2.0-2.1-1.9
Seeking ratio, punishment vs. effort0.60.91.2-1.0-1.1-0.7
Retroperitoneal fat weight0.62.53.81.21.42.0
Reaction time number correct0.10.20.40.20.30.6
Reaction time mean minus median0.10.31.0-1.0-0.1-0.1
Reaction time mean minus median AUC0.30.72.0-1.4-0.30.0
Reaction time num false alarms1.52.12.91.31.71.4
Reaction time num false alarms AUC1.72.73.71.41.91.5
Reaction time trials correct on left0.10.20.40.20.30.6
Reaction time trials on left0.10.20.40.10.40.6
Reaction time mean0.10.10.2-0.30.40.2
Reaction time mean AUC0.10.20.5-0.30.70.3
Median of all reaction times0.20.20.40.20.70.4
Reaction time omissions0.50.81.5-0.11.20.9
Reaction time false alarm rate0.91.21.81.11.30.9
Reaction time premature initiation rate0.10.10.2-0.4-0.1-0.2
Reaction time premature initiations0.00.10.1-0.30.10.3
Std. dev. reaction times0.20.41.1-1.00.1-0.0
Reaction time trials completed0.10.20.40.10.40.6
Reaction time trials AUC0.20.30.60.30.60.8
Run reversals in cocaine runway, females0.20.20.7-0.8-0.0-0.1
Run reversals in cocaine runway, males0.90.92.40.01.60.4
Latency to leave start box in cocaine runway0.10.10.3-0.50.20.1
Latency to leave start box in cocaine runway, F0.40.40.7-0.20.80.8
Latency to leave start box in cocaine runway, M0.20.20.4-0.2-0.7-0.4
Std. dev. time between licks in bursts0.81.11.3-0.8-1.1-1.2
Total sessions with >9 infusions1.72.02.31.41.51.4
Short access day 1 total inactive lever presses1.01.32.2-0.3-1.5-1.2
Short access day 10 total inactive lever presses2.45.87.3-1.8-2.7-2.6
Short access day 1 total infusions0.00.10.10.2-0.4-0.1
Short access day 10 total infusions0.50.61.01.00.80.6
Short access total infusions0.81.11.71.30.80.9
Short access day 1 locomotion1.92.33.11.31.81.5
Short access day 10 total locomotion0.50.91.7-0.7-0.9-1.3
Short access total locomotion0.91.11.71.30.81.0
One hour access (0.3 mA shock)0.50.51.0-0.4-1.0-0.7
Compulsive drug intake1.11.44.0-0.3-2.00.0
One hour access (shock baseline)0.10.10.20.50.1-0.3
Social response proportion1.92.23.6-1.5-0.8-1.9
Social responses0.70.81.6-1.20.2-1.0
Social time1.92.63.4-1.8-1.1-1.9
Soleus weight0.10.30.50.00.70.7
Bone: stiffness1.72.83.1-1.6-1.8-1.7
Tibialis anterior weight0.00.20.20.40.50.4
Time to tail flick, vehicle, before self-admin0.50.50.70.50.80.8
Time to tail flick, vehicle, after self-admin1.01.32.2-0.4-1.2-1.5
Time to tail flick, test, before self-admin0.40.50.60.40.80.7
Time to tail flick, test, after self-admin0.20.20.30.50.50.4
Delta time to tail flick, vehicle, before/after SA1.00.91.1-0.9-1.0-1.1
Delta time to tail flick, test, before/after SA0.10.10.20.50.10.2
Tibia length2.05.56.6-2.6-2.0-2.4
Ambulatory time before self-admin0.71.02.0-0.1-1.4-1.0
Ambulatory time after self-admin3.54.15.0-2.2-2.0-1.9
Bone: tissue strength4.24.36.0-1.8-2.5-1.8
Total heroin consumption0.50.60.8-0.5-0.9-0.8
Bone: trabecular number0.81.32.5-1.6-0.2-1.2
Bone: trabecular spacing1.01.32.7-0.7-1.6-0.9
Bone: trabecular thickness0.30.30.60.40.80.5
Bone: trabecular tissue density2.02.93.61.91.61.6
Water consumed over 24 hours0.20.30.6-0.8-0.1-0.5
Number of responses in last shaping day0.20.20.60.0-0.2-0.8