Zfp790

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression Zfp790 0.04 0.03 3.7e-04 0.01 0 0 0.01 4.3e-02 8.2e-02 1.1e-01 2.4e-02
2 Eye mRNA stability Zfp790 0.39 0.23 2.9e-03 0.08 0 -0 -0.01 2.7e-02 3.0e-01 3.8e-01 6.1e-01
3 Eye gene expression Zfp790 0.72 0.2 1.7e-03 0.06 0.03 0.05 0 5.1e-02 1.3e-01 5.7e-02 3.0e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.30.41.10.31.10.2
Area under the delay curve0.91.01.3-1.20.71.0
BMI with tail0.30.91.31.2-0.7-0.9
BMI without tail0.20.30.4-0.40.60.7
Body weight2.39.511.5-2.93.42.9
Weight adjusted by age0.20.20.30.60.2-0.4
Bone surface0.91.63.2-0.71.81.0
Bone volume0.81.32.8-0.61.70.9
Breakpoint value in progressive ratio session2.93.24.8-1.81.22.2
Number of licking bursts3.54.24.71.8-2.1-2.2
Context. condit. distance diff. score0.10.10.10.2-0.40.0
Locomotion velocity, session 10.80.91.11.1-0.9-0.9
Locomotion distance, session 10.60.71.3-1.20.60.7
Locomotion velocity, session 20.40.40.70.9-0.7-0.4
Locomotion distance, session 21.31.81.91.3-1.3-1.4
Locomotion velocity, session 30.40.50.70.9-0.6-0.6
Locomotion distance, session 33.33.64.0-2.01.72.0
Stereotopy head waving bouts, day 31.21.42.51.6-0.7-1.1
Stereotopy head waving duration, day 32.32.74.52.1-1.2-1.5
Locomotion velocity, session 70.10.10.30.00.50.4
Locomotion distance, session 70.00.10.1-0.20.30.2
Stereotopy head waving bouts, day 70.70.81.10.8-1.0-0.8
Stereotopy head waving duration, day 72.12.52.91.6-1.7-1.5
Locomotion velocity, session 84.45.36.02.4-2.2-2.2
Locomotion distance, session 80.71.01.40.8-1.2-0.9
Degree of sensitization distance1.01.01.61.3-0.7-1.0
Degree of sensitization stereotypy0.80.91.30.6-1.2-1.0
Conditioned locomotion0.30.40.70.4-0.9-0.6
Cocaine response after cond. corrected0.00.00.0-0.1-0.20.2
Cocaine response after cond. not corrected0.00.00.00.0-0.00.1
Cocaine response before conditioning0.70.81.7-0.41.30.7
Saline control response0.10.20.4-0.60.10.3
Bone: connectivity density0.20.30.60.60.8-0.1
Bone: cortical apparent density2.53.33.61.8-1.8-1.9
Bone: cortical area1.42.12.5-1.51.61.2
Bone: cortical porosity2.12.33.41.8-0.9-1.6
Bone: cortical porosity2.52.83.92.0-1.2-1.7
Bone: cortical thickness0.30.50.8-0.90.70.4
Bone: cortical thickness0.91.11.41.1-0.9-1.2
Bone: cortical tissue density2.93.84.11.9-1.9-2.0
Condit. Reinf. active minus inactive responses0.20.20.30.5-0.6-0.3
Condit. Reinf. active-inactive response ratio0.10.10.20.5-0.4-0.2
Condit. Reinf. active responses1.92.33.11.4-1.8-1.4
Condit. Reinf. inactive responses1.92.23.21.1-1.8-1.5
Incentive salience index mean0.10.10.20.3-0.5-0.1
Condit. Reinf. lever presses0.10.10.2-0.30.10.5
Condit. Reinf. active minus inactive responses3.03.74.6-2.11.42.1
Condit. Reinf. active-inactive response ratio0.40.40.7-0.9-0.30.6
Condit. Reinf. active responses4.66.36.7-2.62.42.6
Condit. Reinf. inactive responses4.15.06.9-2.02.62.0
Condit. Reinf. lever presses9.012.213.9-3.73.33.4
Condit. Reinf. lever reinforcers received4.76.77.4-2.72.42.6
Conditioned reinforcement - actives0.30.30.5-0.3-0.7-0.6
Conditioned reinforcement - inactives0.80.92.0-1.40.70.6
Conditioned locomotion2.53.03.71.6-1.9-1.7
Patch foraging indifference point 0 sec0.20.30.5-0.60.70.1
Patch foraging indifference point AUC0.40.50.60.7-0.6-0.8
Delay disc. indifference point, 0s delay0.70.81.7-1.3-0.20.7
Delay disc. indifference point, 16s delay2.82.83.9-2.01.21.8
Delay disc. indifference point, 2s delay1.01.11.8-1.30.90.9
Delay disc. indifference point, 24s delay3.33.23.5-1.71.91.8
Delay disc. indifference point, 4s delay0.10.10.3-0.6-0.10.3
Delay disc. indifference point, 8s delay0.20.20.50.10.70.4
Indifference point function ln k0.60.81.3-0.90.61.1
Indifference point function log k0.60.81.3-0.90.61.1
Patch foraging total patch changes 0 sec0.30.50.8-0.80.90.3
Patch foraging total patch changes 12 sec0.10.20.3-0.60.30.3
Patch foraging total patch changes 18 sec0.20.20.60.30.1-0.8
Patch foraging total patch changes 24 sec1.01.21.7-1.31.20.7
Patch foraging total patch changes 6 sec0.20.20.5-0.20.7-0.3
Patch foraging time to switch 0 sec0.50.71.11.0-0.9-0.5
Patch foraging water rate 0 sec0.81.32.01.2-0.7-1.4
Patch foraging water rate 12 sec0.50.71.2-1.10.80.5
Patch foraging water rate 18 sec0.20.30.50.5-0.3-0.7
Patch foraging water rate 24 sec0.00.00.1-0.3-0.1-0.1
Patch foraging water rate 6 sec0.71.01.9-0.61.40.9
Seeking ratio, delayed vs. immediate footshock1.31.41.9-1.41.01.2
Distance traveled before self-admin0.50.51.0-1.0-0.30.7
Distance traveled after self-admin4.85.36.9-2.62.12.1
Extensor digitorum longus weight0.20.60.70.8-0.7-0.8
Bone: elastic displacement0.00.00.10.1-0.1-0.3
Bone: elastic work1.62.12.4-1.41.61.4
Bone: endosteal estimation1.83.94.1-1.92.02.0
Bone: endosteal perimeter1.93.94.4-2.01.82.1
Epididymis fat weight0.00.00.10.10.3-0.0
Delta time in closed arm before/after self-admin2.12.03.0-0.91.71.5
Delta time in open arm before/after self-admin0.60.51.10.5-0.5-1.0
Diff in mean of infusions in LGA sessions0.20.20.5-0.4-0.70.4
Delay discount exponential model param1.01.11.31.1-0.9-1.0
Extinction: sum of active levers before priming3.43.44.5-1.41.92.1
Active lever presses in extinction session 62.62.63.6-1.21.71.9
Bone: final force1.52.43.4-1.41.81.3
Bone: final moment2.03.34.3-1.72.11.6
Food consumed during 24 hour testing period0.81.01.1-1.01.00.9
Glucose0.20.30.30.6-0.5-0.5
Heart weight0.20.30.5-0.60.20.7
Delay discount hyperbolic model param0.70.81.11.1-0.7-0.8
Intermittent access intake day 1-15 change2.02.02.8-1.71.31.2
Intermittent access intake escalation1.91.82.3-1.51.31.2
Intermittent access intake escalation 22.22.23.4-1.81.01.4
Intermitt. access day 1 inactive lever presses3.84.15.2-1.52.22.3
Intermitt. access day 15 inactive lever presses0.80.81.1-0.80.91.0
Intermitt. access escalation Index0.10.10.20.2-0.5-0.2
Intermittent access day 1 total infusions2.12.43.41.1-1.9-1.6
Intermittent access day 15 total infusions0.20.30.5-0.7-0.60.0
Intermittent access terminal intake (last 3 days)0.50.50.9-0.8-1.0-0.1
Intermittent access total infusions0.50.61.4-0.1-1.2-0.5
Intermittent access day 1 locomotion0.91.01.50.7-1.2-0.9
Intermittent access day 15 total locomotion0.10.10.20.1-0.4-0.3
Intermittent access total locomotion1.11.32.20.9-1.5-1.0
Intermittent access standard deviation5.96.38.5-2.92.12.4
Left kidney weight1.74.86.8-1.72.62.1
Right kidney weight3.910.912.8-2.83.63.5
Cocaine induced anxiety0.50.61.1-0.20.81.1
Post-drug Anxiety0.00.00.00.2-0.10.2
Baseline Anxiety1.11.11.70.7-1.1-1.3
Tail length5.617.118.6-4.34.14.0
Length with tail7.929.130.2-5.55.55.2
Length without tail3.98.611.7-2.73.42.6
Times rat made contact with spout1.31.52.11.2-1.0-1.4
Lifetime Intake0.70.81.70.4-1.3-0.8
Liver weight, left0.61.01.51.0-0.7-1.2
Liver weight, right0.10.10.30.1-0.1-0.6
Locomotor activity0.71.11.81.3-0.6-1.0
Locomotor testing distance0.60.91.61.3-0.6-0.9
Locomotor testing rearing2.43.84.52.0-1.7-2.1
Locomotion in novel chamber0.00.10.10.2-0.40.1
Locomotion in novel chamber post-restriction0.50.61.0-0.90.01.0
Fecal boli incidents, locomotor time 11.81.93.21.3-1.8-0.9
Change in fecal boli incidents, locomotor task0.30.20.6-0.20.70.3
Time >=10cm from walls, locomotor time 10.00.00.00.2-0.10.1
Bouts of movement, locomotor time 11.11.22.5-1.60.31.0
Total resting periods, locomotor time 11.11.22.5-1.60.21.1
Rest time, locomotor task time 10.50.51.40.1-1.2-0.3
Distance moved, locomotor task time 10.10.20.20.30.5-0.4
Vertical activity count, locomotor time 11.71.84.0-0.72.00.9
Time >=10cm from walls, locomotor time 20.91.02.10.2-1.4-0.9
Bouts of movement, locomotor time 20.10.10.2-0.5-0.30.1
Total resting periods, locomotor time 20.00.00.1-0.3-0.30.0
Rest time, locomotor task time 20.10.10.4-0.1-0.6-0.2
Distance moved, locomotor task time 20.40.41.00.5-0.0-1.0
Vertical activity count, locomotor time 20.60.71.3-0.61.10.6
Light reinforcement 10.10.30.60.2-0.3-0.8
Light reinforcement 23.44.56.32.5-1.9-1.9
Bone: marrow area1.84.04.3-1.92.12.0
Bone: maximum diameter1.32.42.9-1.51.71.4
Bone: maximum force2.64.55.2-2.12.31.9
Bone: maximum moment3.25.66.1-2.42.52.2
Mean time between licks in bursts0.10.10.2-0.10.20.4
Mean num. licks in bursts0.80.91.2-0.81.11.0
Cd content in liver0.00.00.10.20.0-0.2
Co content in liver0.70.81.91.4-0.4-0.7
Cu content in liver0.50.60.9-0.91.00.4
Fe content in liver0.00.00.00.2-0.1-0.1
K content in liver0.10.10.1-0.20.30.3
Mg content in liver0.30.30.50.6-0.5-0.7
Mn content in liver0.91.11.41.0-0.9-1.2
Na content in liver2.72.83.6-1.91.21.9
Rb content in liver0.00.00.0-0.1-0.1-0.1
Se content in liver8.510.411.03.3-3.1-3.3
Sr content in liver0.80.81.11.0-0.8-0.8
Zn content in liver0.10.10.30.50.0-0.3
Bone: minimum diameter4.27.99.2-3.02.52.8
Time in familiar zone, hab. session 10.30.30.3-0.60.50.5
Time in novel zone, hab. session 10.80.81.00.6-1.0-1.0
Total zone transitions, hab. session 10.10.20.5-0.7-0.10.2
Total locomotion distance, hab. session 12.53.66.1-2.51.31.7
Locomotion velocity, hab. session 11.42.03.2-1.81.01.3
Time in familiar zone, hab. session 22.52.63.0-1.41.71.6
Time in novel zone, hab. session 21.71.72.01.1-1.4-1.4
Total zone transitions, hab. session 22.02.53.81.1-2.0-1.6
Total locomotion distance, hab. session 20.10.10.3-0.5-0.3-0.0
Locomotion velocity, hab. session 20.10.10.1-0.3-0.4-0.2
Novel to familiar place preference ratio0.40.40.9-1.00.30.5
Novelty place preference0.30.30.8-0.90.20.4
Time in novel zone, NPP test0.10.10.4-0.6-0.00.2
Total zone transitions, NPP test0.10.10.20.2-0.3-0.5
Total locomotion distance, NPP test2.63.64.4-2.11.81.7
Locomotion velocity, NPP test2.94.15.1-2.32.01.8
Intraocular pressure0.00.10.1-0.3-0.30.2
Delta distance traveled before/after self-admin4.14.47.2-1.82.71.7
Delta ambulatory time before/after self-admin3.84.27.6-1.62.81.6
Parametrial fat weight0.61.12.31.5-0.1-1.0
Pavlov. Cond. lever latency0.10.10.2-0.30.30.4
Pavlov. Cond. magazine entry latency0.30.40.60.3-0.6-0.8
Pavlov. Cond. change in total contacts0.10.10.10.1-0.4-0.2
Pavlov. Cond. index score0.30.40.60.6-0.6-0.8
Pavlov. Cond. latency score0.10.20.20.4-0.4-0.4
Pavlov. Cond. lever contacts0.10.10.2-0.50.30.3
Pavlov. Cond. magazine entry number0.40.50.8-0.40.70.9
Pavlov. Cond. intertrial magazine entries0.60.71.30.8-1.1-0.4
Pavlov. Cond. lever-magazine prob. diff.0.40.50.70.5-0.7-0.9
Pavlov. Cond. response bias0.10.10.1-0.0-0.3-0.4
Pavlov. Cond. lever latency5.16.87.12.6-2.6-2.7
Pavlov. Cond. magazine entry latency3.54.04.5-2.01.92.1
Pavlov. Cond. change in total contacts9.012.414.1-3.53.33.8
Pavlov. Cond. index score5.46.97.5-2.62.52.7
Pavlov. Cond. latency score5.26.57.1-2.52.42.7
Pavlov. Cond. lever contacts4.66.26.6-2.52.42.6
Pavlov. Cond. magazine entry number3.84.75.42.1-2.0-2.3
Pavlov. Cond. intertrial magazine entries1.82.33.31.7-0.9-1.8
Pavlov. Cond. lever-magazine prob. diff.5.36.77.0-2.62.52.6
Pavlov. Cond. response bias5.27.17.7-2.72.52.8
Time in closed arm before self-admin2.22.53.31.0-1.8-1.7
Time in closed arm after self-admin0.20.20.5-0.30.00.7
Time in open arm before self-admin3.43.75.6-1.32.42.0
Time in open arm after self-admin0.80.92.1-0.41.50.5
Bone: periosteal estimation2.14.34.9-2.02.22.0
Bone: periosteal perimeter2.03.34.0-2.01.51.9
Bone: post-yield work1.92.62.8-1.71.61.5
Progressive ratio test 1 active lever presses0.20.20.4-0.60.30.5
Progressive ratio test 1 breakpoint0.50.60.7-0.80.50.8
Progressive ratio test 1 inactive lever presses0.50.50.9-0.90.50.7
Progressive ratio test 2 active lever presses0.30.30.5-0.7-0.50.2
Progressive ratio test 2 breakpoint0.20.30.4-0.6-0.60.1
Progressive ratio test 2 inactive lever presses2.52.95.5-2.30.31.7
Incentive Sensitization - Responses0.30.30.6-0.4-0.80.1
Incentive Sensitization - Breakpoint0.20.20.6-0.2-0.8-0.0
Sum of active levers in priming session hrs 5-60.20.20.40.00.30.6
Progressive ratio0.00.00.00.00.00.2
Food seeking constrained by brief footshock3.84.75.2-2.32.12.1
Seeking ratio, punishment vs. effort0.91.11.4-1.21.00.9
Retroperitoneal fat weight1.96.27.32.5-2.3-2.7
Reaction time number correct0.20.30.40.7-0.2-0.6
Reaction time mean minus median0.30.41.0-0.31.00.2
Reaction time mean minus median AUC0.50.71.9-0.31.40.1
Reaction time num false alarms1.31.72.11.4-1.2-1.3
Reaction time num false alarms AUC1.52.12.71.7-1.3-1.4
Reaction time trials correct on left0.20.30.40.7-0.2-0.6
Reaction time trials on left0.20.30.50.7-0.2-0.7
Reaction time mean0.10.10.20.40.4-0.2
Reaction time mean AUC0.20.30.60.80.3-0.4
Median of all reaction times0.10.20.40.60.0-0.3
Reaction time omissions0.40.61.01.00.1-0.9
Reaction time false alarm rate0.60.91.01.0-1.0-0.7
Reaction time premature initiation rate0.20.20.4-0.60.50.3
Reaction time premature initiations0.00.10.1-0.10.3-0.2
Std. dev. reaction times0.30.41.1-0.01.10.1
Reaction time trials completed0.20.30.50.7-0.2-0.7
Reaction time trials AUC0.40.50.80.9-0.3-0.8
Run reversals in cocaine runway, females0.20.20.40.20.7-0.1
Run reversals in cocaine runway, males0.80.82.31.5-0.0-0.4
Latency to leave start box in cocaine runway0.10.10.20.30.4-0.2
Latency to leave start box in cocaine runway, F0.30.30.60.80.1-0.6
Latency to leave start box in cocaine runway, M0.10.10.2-0.40.3-0.0
Std. dev. time between licks in bursts1.21.42.2-1.10.91.5
Total sessions with >9 infusions1.61.82.21.3-1.2-1.5
Short access day 1 total inactive lever presses0.60.71.6-1.30.10.7
Short access day 10 total inactive lever presses2.22.43.6-1.51.21.9
Short access day 1 total infusions0.10.10.20.1-0.5-0.3
Short access day 10 total infusions0.70.80.90.8-0.9-0.8
Short access total infusions1.41.61.91.2-1.4-1.2
Short access day 1 locomotion1.61.73.21.8-0.6-1.3
Short access day 10 total locomotion0.60.60.9-0.50.81.0
Short access total locomotion1.11.11.21.1-1.0-1.1
One hour access (0.3 mA shock)1.11.32.2-1.50.81.0
Compulsive drug intake0.30.30.7-0.80.30.1
One hour access (shock baseline)0.10.10.1-0.4-0.20.2
Social response proportion2.42.63.3-1.51.51.8
Social responses0.70.91.7-0.41.30.9
Social time1.92.63.4-1.41.81.6
Soleus weight0.30.71.30.9-0.4-1.1
Bone: stiffness1.42.22.3-1.51.51.4
Tibialis anterior weight0.00.10.20.2-0.2-0.5
Time to tail flick, vehicle, before self-admin0.80.81.10.6-1.1-1.0
Time to tail flick, vehicle, after self-admin0.30.30.8-0.90.00.5
Time to tail flick, test, before self-admin0.90.81.70.7-0.6-1.3
Time to tail flick, test, after self-admin0.30.40.60.7-0.1-0.8
Delta time to tail flick, vehicle, before/after SA0.70.70.9-0.71.00.7
Delta time to tail flick, test, before/after SA0.10.10.20.4-0.2-0.4
Tibia length2.15.97.4-2.02.72.5
Ambulatory time before self-admin0.30.40.6-0.8-0.30.6
Ambulatory time after self-admin7.58.28.6-2.92.92.8
Bone: tissue strength3.83.74.3-2.12.01.7
Total heroin consumption0.91.11.7-1.30.51.1
Bone: trabecular number0.71.22.5-0.41.60.9
Bone: trabecular spacing0.81.01.8-1.30.51.0
Bone: trabecular thickness0.40.51.01.0-0.3-0.7
Bone: trabecular tissue density2.73.84.02.0-2.0-1.9
Water consumed over 24 hours0.20.20.5-0.30.70.3
Number of responses in last shaping day0.40.40.8-0.9-0.50.4