Zfp395

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 pVTA gene expression Zfp395 0.05 0.03 1.1e-03 0.01 0.03 0.02 0.01 1.0e-01 1.2e-03 1.9e-02 3.4e-02
2 Adipose isoform ratio XM_039093334.2 0.03 0.02 4.5e-03 0.02 0.01 0.02 0.02 1.1e-03 2.3e-02 3.0e-03 4.9e-03
3 Adipose gene expression Zfp395 0.09 0.05 1.4e-06 0.05 0.04 0.04 0.05 6.9e-06 1.5e-05 1.2e-05 6.4e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.71.22.8-1.70.70.6
Area under the delay curve2.94.49.41.9-3.1-0.1
BMI with tail0.10.40.60.8-0.7-0.3
BMI without tail0.00.10.1-0.40.20.4
Body weight0.41.83.01.5-0.1-1.7
Weight adjusted by age1.23.46.81.41.2-2.6
Bone surface0.30.61.4-1.20.60.3
Bone volume0.30.51.1-1.1-0.20.7
Breakpoint value in progressive ratio session0.61.12.80.6-1.70.2
Number of licking bursts0.10.41.00.1-1.00.4
Context. condit. distance diff. score2.73.36.3-1.4-1.32.5
Locomotion velocity, session 10.00.10.1-0.1-0.30.2
Locomotion distance, session 10.00.00.0-0.1-0.00.0
Locomotion velocity, session 20.20.30.70.3-0.80.3
Locomotion distance, session 20.10.10.2-0.40.5-0.0
Locomotion velocity, session 30.60.71.20.90.3-1.1
Locomotion distance, session 30.10.10.20.4-0.4-0.2
Stereotopy head waving bouts, day 31.01.22.10.11.4-1.3
Stereotopy head waving duration, day 31.11.42.51.10.7-1.6
Locomotion velocity, session 73.13.46.0-1.7-1.22.4
Locomotion distance, session 73.84.98.2-2.4-0.72.9
Stereotopy head waving bouts, day 71.31.62.81.30.4-1.7
Stereotopy head waving duration, day 72.63.25.91.90.6-2.4
Locomotion velocity, session 80.50.61.10.2-1.00.8
Locomotion distance, session 81.01.52.8-1.1-0.71.7
Degree of sensitization distance5.55.99.9-2.7-0.63.2
Degree of sensitization stereotypy1.01.12.11.5-0.5-1.0
Conditioned locomotion0.60.71.2-0.8-0.61.1
Cocaine response after cond. corrected1.21.72.7-0.2-1.61.5
Cocaine response after cond. not corrected1.01.42.2-0.3-1.41.5
Cocaine response before conditioning0.50.61.3-0.21.1-0.7
Saline control response0.40.60.90.20.9-0.9
Bone: connectivity density2.54.16.9-2.62.30.1
Bone: cortical apparent density0.10.20.50.4-0.70.1
Bone: cortical area1.52.45.81.2-2.40.3
Bone: cortical porosity1.11.11.91.4-0.9-0.9
Bone: cortical porosity1.21.32.11.5-0.7-1.2
Bone: cortical thickness1.93.27.21.6-2.70.2
Bone: cortical thickness4.55.511.71.0-3.41.9
Bone: cortical tissue density0.10.20.40.4-0.60.1
Condit. Reinf. active minus inactive responses0.30.40.70.60.2-0.8
Condit. Reinf. active-inactive response ratio0.10.10.20.20.4-0.5
Condit. Reinf. active responses0.20.20.50.40.1-0.7
Condit. Reinf. inactive responses0.10.10.2-0.20.2-0.4
Incentive salience index mean0.91.11.71.3-0.1-1.3
Condit. Reinf. lever presses0.71.11.91.4-0.4-1.1
Condit. Reinf. active minus inactive responses0.10.20.5-0.4-0.10.7
Condit. Reinf. active-inactive response ratio0.00.10.1-0.00.20.4
Condit. Reinf. active responses0.30.40.7-0.7-0.10.8
Condit. Reinf. inactive responses0.71.01.8-1.4-0.11.1
Condit. Reinf. lever presses0.50.71.20.11.1-0.9
Condit. Reinf. lever reinforcers received0.10.20.3-0.4-0.10.6
Conditioned reinforcement - actives0.93.44.2-2.01.61.9
Conditioned reinforcement - inactives1.02.64.2-1.82.10.6
Conditioned locomotion1.11.64.0-0.4-0.82.0
Patch foraging indifference point 0 sec0.30.81.4-0.41.2-0.9
Patch foraging indifference point AUC0.40.91.40.5-1.11.2
Delay disc. indifference point, 0s delay0.10.10.2-0.2-0.40.2
Delay disc. indifference point, 16s delay2.23.17.41.3-2.70.5
Delay disc. indifference point, 2s delay0.30.40.60.7-0.8-0.2
Delay disc. indifference point, 24s delay3.25.112.11.4-3.51.1
Delay disc. indifference point, 4s delay2.62.84.22.1-1.8-1.0
Delay disc. indifference point, 8s delay2.44.08.11.9-2.8-0.4
Indifference point function ln k0.20.71.60.10.7-1.2
Indifference point function log k0.20.71.60.10.7-1.2
Patch foraging total patch changes 0 sec0.30.81.40.01.0-1.2
Patch foraging total patch changes 12 sec0.00.00.10.3-0.2-0.1
Patch foraging total patch changes 18 sec0.10.20.5-0.2-0.20.7
Patch foraging total patch changes 24 sec0.00.10.20.50.0-0.4
Patch foraging total patch changes 6 sec0.00.00.00.0-0.0-0.0
Patch foraging time to switch 0 sec0.10.40.7-0.8-0.50.6
Patch foraging water rate 0 sec0.20.81.11.10.3-1.1
Patch foraging water rate 12 sec0.20.91.60.90.6-1.3
Patch foraging water rate 18 sec1.43.25.82.4-0.8-1.8
Patch foraging water rate 24 sec0.10.20.40.6-0.4-0.1
Patch foraging water rate 6 sec1.11.72.71.60.3-1.5
Seeking ratio, delayed vs. immediate footshock0.10.20.4-0.60.4-0.3
Distance traveled before self-admin0.20.50.60.50.7-0.8
Distance traveled after self-admin0.50.81.41.2-0.9-0.5
Extensor digitorum longus weight4.819.338.16.2-2.8-3.5
Bone: elastic displacement0.10.10.1-0.20.3-0.2
Bone: elastic work0.30.40.80.5-0.4-0.9
Bone: endosteal estimation0.00.10.1-0.40.20.1
Bone: endosteal perimeter0.10.30.6-0.80.60.1
Epididymis fat weight0.10.40.9-0.0-0.90.6
Delta time in closed arm before/after self-admin0.70.71.5-1.20.30.6
Delta time in open arm before/after self-admin0.10.10.30.5-0.2-0.4
Diff in mean of infusions in LGA sessions1.52.75.01.6-0.7-2.2
Delay discount exponential model param3.85.19.9-2.33.20.3
Extinction: sum of active levers before priming0.00.00.1-0.3-0.2-0.1
Active lever presses in extinction session 60.50.51.1-0.4-0.51.0
Bone: final force0.81.32.81.1-1.7-0.1
Bone: final moment0.60.91.51.0-1.2-0.4
Food consumed during 24 hour testing period0.20.40.60.60.7-0.8
Glucose0.60.91.50.9-1.20.7
Heart weight0.10.20.4-0.60.3-0.1
Delay discount hyperbolic model param3.34.38.1-2.22.90.3
Intermittent access intake day 1-15 change0.10.81.4-1.20.50.9
Intermittent access intake escalation0.10.40.7-0.90.40.5
Intermittent access intake escalation 20.00.10.2-0.40.10.0
Intermitt. access day 1 inactive lever presses0.22.03.7-1.51.90.3
Intermitt. access day 15 inactive lever presses0.31.63.0-0.11.7-1.3
Intermitt. access escalation Index0.10.30.5-0.6-0.10.7
Intermittent access day 1 total infusions0.20.51.6-0.20.21.2
Intermittent access day 15 total infusions0.51.32.2-1.20.41.5
Intermittent access terminal intake (last 3 days)0.50.92.0-0.80.21.4
Intermittent access total infusions1.72.04.1-1.30.12.0
Intermittent access day 1 locomotion0.00.00.1-0.0-0.20.3
Intermittent access day 15 total locomotion0.00.10.3-0.00.10.5
Intermittent access total locomotion0.10.10.2-0.20.00.5
Intermittent access standard deviation0.00.20.30.6-0.30.3
Left kidney weight0.32.45.21.20.9-2.3
Right kidney weight0.74.710.31.01.7-3.2
Cocaine induced anxiety0.30.81.50.9-0.3-1.2
Post-drug Anxiety1.01.22.4-0.21.1-1.5
Baseline Anxiety0.30.40.9-0.90.70.1
Tail length0.42.04.1-0.82.0-1.0
Length with tail0.41.94.10.31.2-2.0
Length without tail0.73.65.42.3-0.4-2.3
Times rat made contact with spout0.10.10.2-0.2-0.30.4
Lifetime Intake1.41.73.8-1.20.21.9
Liver weight, left1.73.05.21.71.0-2.3
Liver weight, right1.01.73.61.9-1.0-0.7
Locomotor activity2.64.18.61.90.5-2.9
Locomotor testing distance0.61.62.6-0.41.4-1.6
Locomotor testing rearing1.34.89.2-0.93.0-2.1
Locomotion in novel chamber0.00.00.1-0.1-0.3-0.2
Locomotion in novel chamber post-restriction0.41.12.10.9-1.40.7
Fecal boli incidents, locomotor time 10.40.92.11.4-0.8-0.2
Change in fecal boli incidents, locomotor task0.91.02.3-0.61.5-0.4
Time >=10cm from walls, locomotor time 10.91.11.6-0.51.2-1.3
Bouts of movement, locomotor time 10.30.40.90.6-0.90.3
Total resting periods, locomotor time 10.80.91.80.5-1.30.9
Rest time, locomotor task time 10.61.01.70.1-1.31.1
Distance moved, locomotor task time 10.20.51.0-0.71.0-0.3
Vertical activity count, locomotor time 10.21.21.90.51.2-1.4
Time >=10cm from walls, locomotor time 20.30.81.5-0.11.2-1.0
Bouts of movement, locomotor time 20.62.04.01.4-2.0-0.3
Total resting periods, locomotor time 20.62.54.51.7-2.1-0.3
Rest time, locomotor task time 22.33.97.32.0-2.70.6
Distance moved, locomotor task time 20.91.22.1-1.21.5-0.1
Vertical activity count, locomotor time 20.20.40.8-0.20.9-0.5
Light reinforcement 10.00.20.4-0.7-0.30.3
Light reinforcement 20.20.50.8-0.6-0.60.9
Bone: marrow area0.00.10.2-0.40.10.2
Bone: maximum diameter1.02.04.61.1-2.10.6
Bone: maximum force1.32.65.41.5-2.30.0
Bone: maximum moment1.01.93.31.5-1.8-0.3
Mean time between licks in bursts0.74.47.2-2.72.40.4
Mean num. licks in bursts0.10.20.5-0.20.70.0
Cd content in liver1.82.14.10.91.1-2.0
Co content in liver1.41.62.71.6-1.4-0.2
Cu content in liver0.40.50.70.9-0.7-0.4
Fe content in liver0.91.22.2-1.51.1-0.0
K content in liver0.60.61.4-1.20.10.7
Mg content in liver1.21.32.7-1.60.51.0
Mn content in liver1.11.22.2-1.50.41.1
Na content in liver3.64.06.62.3-0.2-2.6
Rb content in liver1.01.12.5-0.81.6-0.4
Se content in liver1.11.32.8-0.81.7-0.8
Sr content in liver0.70.60.8-0.90.7-0.6
Zn content in liver0.40.40.9-0.90.6-0.1
Bone: minimum diameter0.51.01.81.1-1.3-0.0
Time in familiar zone, hab. session 10.70.71.3-0.4-0.91.1
Time in novel zone, hab. session 10.91.02.01.4-0.4-1.0
Total zone transitions, hab. session 10.50.61.20.8-1.10.3
Total locomotion distance, hab. session 10.30.40.70.1-0.80.7
Locomotion velocity, hab. session 10.10.10.1-0.2-0.30.4
Time in familiar zone, hab. session 20.10.10.2-0.4-0.10.5
Time in novel zone, hab. session 20.10.10.10.3-0.30.1
Total zone transitions, hab. session 20.30.40.90.9-0.1-0.6
Total locomotion distance, hab. session 20.10.10.20.3-0.50.2
Locomotion velocity, hab. session 20.20.30.40.6-0.60.1
Novel to familiar place preference ratio0.20.30.6-0.2-0.40.8
Novelty place preference0.10.20.4-0.3-0.10.6
Time in novel zone, NPP test0.00.10.1-0.2-0.00.4
Total zone transitions, NPP test0.00.10.1-0.3-0.10.2
Total locomotion distance, NPP test1.31.93.8-2.00.81.0
Locomotion velocity, NPP test1.31.93.6-1.90.71.2
Intraocular pressure1.32.13.2-1.81.80.3
Delta distance traveled before/after self-admin0.70.81.51.0-1.2-0.3
Delta ambulatory time before/after self-admin0.61.12.11.0-1.40.1
Parametrial fat weight1.33.15.2-2.30.12.0
Pavlov. Cond. lever latency0.50.61.1-1.10.40.7
Pavlov. Cond. magazine entry latency0.30.40.90.50.4-0.9
Pavlov. Cond. change in total contacts1.92.14.42.1-0.9-1.0
Pavlov. Cond. index score1.31.62.51.6-0.3-1.5
Pavlov. Cond. latency score0.91.11.81.3-0.2-1.3
Pavlov. Cond. lever contacts0.50.61.11.1-0.3-0.8
Pavlov. Cond. magazine entry number1.21.52.4-1.50.11.5
Pavlov. Cond. intertrial magazine entries0.10.20.3-0.20.5-0.4
Pavlov. Cond. lever-magazine prob. diff.1.51.93.11.7-0.3-1.5
Pavlov. Cond. response bias1.11.32.41.5-0.3-1.2
Pavlov. Cond. lever latency1.72.44.2-1.2-1.22.0
Pavlov. Cond. magazine entry latency0.60.81.31.1-0.5-1.0
Pavlov. Cond. change in total contacts1.64.06.72.10.9-2.6
Pavlov. Cond. index score1.62.44.41.60.7-2.1
Pavlov. Cond. latency score1.62.54.81.40.9-2.2
Pavlov. Cond. lever contacts1.52.23.91.21.2-2.0
Pavlov. Cond. magazine entry number0.20.30.5-0.70.50.4
Pavlov. Cond. intertrial magazine entries3.16.713.4-3.71.62.0
Pavlov. Cond. lever-magazine prob. diff.1.42.23.71.60.4-1.9
Pavlov. Cond. response bias1.31.83.11.50.5-1.8
Time in closed arm before self-admin0.50.91.60.80.8-1.2
Time in closed arm after self-admin0.10.20.3-0.40.5-0.2
Time in open arm before self-admin0.40.50.7-0.9-0.20.8
Time in open arm after self-admin0.10.10.2-0.30.4-0.3
Bone: periosteal estimation0.30.61.70.4-1.30.4
Bone: periosteal perimeter0.10.20.60.0-0.70.2
Bone: post-yield work4.98.415.90.6-4.03.0
Progressive ratio test 1 active lever presses0.50.92.6-0.2-0.31.6
Progressive ratio test 1 breakpoint0.50.82.4-0.1-0.41.5
Progressive ratio test 1 inactive lever presses0.71.72.3-1.51.50.7
Progressive ratio test 2 active lever presses0.30.40.8-0.30.90.5
Progressive ratio test 2 breakpoint0.20.30.8-0.10.90.3
Progressive ratio test 2 inactive lever presses0.72.14.2-1.32.10.7
Incentive Sensitization - Responses0.51.33.00.11.7-0.9
Incentive Sensitization - Breakpoint0.61.43.20.01.8-1.0
Sum of active levers in priming session hrs 5-60.30.30.4-0.7-0.30.5
Progressive ratio0.30.91.51.10.1-1.2
Food seeking constrained by brief footshock0.30.40.7-0.2-0.70.8
Seeking ratio, punishment vs. effort0.30.61.2-0.5-0.71.1
Retroperitoneal fat weight0.31.21.8-1.4-0.11.3
Reaction time number correct0.10.30.6-0.60.80.1
Reaction time mean minus median0.10.71.50.50.7-1.2
Reaction time mean minus median AUC0.10.71.00.11.0-1.0
Reaction time num false alarms0.30.51.40.2-0.2-1.2
Reaction time num false alarms AUC0.30.61.30.6-0.4-1.1
Reaction time trials correct on left0.10.30.6-0.60.80.1
Reaction time trials on left0.10.40.8-0.70.90.1
Reaction time mean0.40.81.60.01.2-1.0
Reaction time mean AUC0.51.21.90.21.4-1.3
Median of all reaction times0.50.71.6-0.11.3-0.8
Reaction time omissions1.42.44.0-2.01.70.3
Reaction time false alarm rate0.40.60.80.7-0.8-0.9
Reaction time premature initiation rate0.40.61.21.1-0.8-0.3
Reaction time premature initiations0.10.20.40.7-0.5-0.0
Std. dev. reaction times0.10.40.60.10.8-0.7
Reaction time trials completed0.10.40.8-0.70.90.1
Reaction time trials AUC0.10.51.0-0.71.00.1
Run reversals in cocaine runway, females0.40.50.8-0.9-0.40.7
Run reversals in cocaine runway, males3.13.47.62.8-1.2-1.0
Latency to leave start box in cocaine runway0.40.51.2-0.21.10.6
Latency to leave start box in cocaine runway, F0.30.30.60.80.6-0.1
Latency to leave start box in cocaine runway, M1.21.22.2-1.11.50.3
Std. dev. time between licks in bursts1.32.43.9-2.01.80.0
Total sessions with >9 infusions0.50.60.7-0.70.80.7
Short access day 1 total inactive lever presses0.20.40.60.7-0.30.7
Short access day 10 total inactive lever presses0.00.20.3-0.60.30.6
Short access day 1 total infusions0.71.33.3-0.80.21.8
Short access day 10 total infusions0.10.20.30.5-0.20.6
Short access total infusions0.30.41.1-0.1-0.01.1
Short access day 1 locomotion0.10.10.20.40.4-0.2
Short access day 10 total locomotion0.00.20.3-0.00.4-0.6
Short access total locomotion0.10.20.30.40.4-0.6
One hour access (0.3 mA shock)1.41.64.0-0.6-0.72.0
Compulsive drug intake0.40.61.2-1.1-0.30.8
One hour access (shock baseline)0.20.61.6-0.40.01.3
Social response proportion1.01.21.7-1.31.00.9
Social responses2.33.05.7-2.41.21.4
Social time1.72.75.8-0.72.4-1.3
Soleus weight0.41.32.41.2-1.50.2
Bone: stiffness0.61.11.71.3-1.2-0.5
Tibialis anterior weight4.114.126.95.2-2.0-3.4
Time to tail flick, vehicle, before self-admin0.10.20.20.4-0.4-0.4
Time to tail flick, vehicle, after self-admin0.51.01.41.2-0.8-0.9
Time to tail flick, test, before self-admin0.40.50.9-1.00.70.1
Time to tail flick, test, after self-admin3.84.17.0-2.71.71.5
Delta time to tail flick, vehicle, before/after SA0.00.00.0-0.10.20.0
Delta time to tail flick, test, before/after SA1.51.82.8-1.71.21.1
Tibia length1.95.48.70.02.7-2.9
Ambulatory time before self-admin0.10.20.30.50.3-0.3
Ambulatory time after self-admin1.22.03.71.9-1.2-0.9
Bone: tissue strength0.10.10.2-0.30.5-0.1
Total heroin consumption1.31.53.01.7-1.0-0.7
Bone: trabecular number1.01.94.0-2.01.30.4
Bone: trabecular spacing1.72.54.32.1-1.8-0.3
Bone: trabecular thickness0.10.10.30.0-0.6-0.0
Bone: trabecular tissue density1.42.44.32.1-0.7-1.5
Water consumed over 24 hours0.40.81.41.2-0.2-0.9
Number of responses in last shaping day1.01.22.41.6-1.1-0.3