Zfp358

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 RMTg gene expression Zfp358 0.32 0.12 2.8e-07 0.24 0.21 0.19 0.2 4.6e-07 3.0e-06 8.5e-06 5.7e-06
2 pVTA gene expression Zfp358 0.24 0.09 0.0e+00 0.15 0.26 0.26 0.27 2.3e-12 9.8e-21 5.4e-21 1.2e-21
3 NAcc gene expression Zfp358 0.07 0.04 6.9e-10 0.05 0.07 0.07 0.07 9.0e-08 2.0e-10 2.7e-11 4.3e-11
4 Brain gene expression Zfp358 0.09 0.05 1.1e-11 0.12 0.13 0.13 0.13 1.4e-11 2.6e-12 3.7e-12 9.4e-12

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.71.23.92.00.20.10.9
Area under the delay curve2.93.35.2-2.3-1.6-1.4-1.9
BMI with tail0.20.81.90.7-0.8-1.4-0.5
BMI without tail1.23.86.3-0.4-2.4-2.5-1.6
Body weight3.013.024.20.4-4.6-4.9-2.5
Weight adjusted by age0.30.41.01.00.40.30.7
Bone surface0.40.81.21.0-0.9-1.1-0.1
Bone volume0.30.62.01.4-0.0-0.30.4
Breakpoint value in progressive ratio session1.51.82.0-1.3-1.3-1.3-1.4
Number of licking bursts0.50.91.41.20.50.61.2
Context. condit. distance diff. score2.63.14.3-1.0-2.0-2.1-1.7
Locomotion velocity, session 10.40.40.8-0.9-0.5-0.5-0.6
Locomotion distance, session 10.10.10.3-0.60.30.3-0.1
Locomotion velocity, session 20.30.30.6-0.8-0.5-0.3-0.5
Locomotion distance, session 20.20.20.5-0.40.40.70.2
Locomotion velocity, session 30.30.40.4-0.5-0.5-0.6-0.7
Locomotion distance, session 30.60.60.80.70.90.90.8
Stereotopy head waving bouts, day 30.20.31.01.0-0.0-0.10.4
Stereotopy head waving duration, day 30.20.20.30.50.50.30.4
Locomotion velocity, session 72.52.73.8-2.0-1.4-1.5-1.7
Locomotion distance, session 71.11.42.3-1.5-1.0-0.9-1.2
Stereotopy head waving bouts, day 70.00.00.1-0.40.00.1-0.2
Stereotopy head waving duration, day 70.00.00.1-0.40.20.2-0.1
Locomotion velocity, session 80.91.01.2-1.0-1.0-1.1-0.9
Locomotion distance, session 81.21.72.3-0.9-1.5-1.5-1.2
Degree of sensitization distance1.01.02.0-1.4-0.8-0.7-1.0
Degree of sensitization stereotypy0.10.10.4-0.6-0.1-0.2-0.4
Conditioned locomotion0.70.80.90.91.00.90.8
Cocaine response after cond. corrected0.20.20.60.80.50.00.4
Cocaine response after cond. not corrected0.10.10.30.1-0.1-0.6-0.3
Cocaine response before conditioning1.51.82.3-1.4-1.3-1.1-1.5
Saline control response0.10.20.40.4-0.7-0.20.1
Bone: connectivity density0.50.81.81.3-0.8-0.80.1
Bone: cortical apparent density0.40.50.9-0.9-0.5-0.6-0.7
Bone: cortical area2.53.95.1-1.3-2.2-2.2-2.0
Bone: cortical porosity0.20.20.20.50.40.50.5
Bone: cortical porosity0.00.00.1-0.00.20.30.1
Bone: cortical thickness1.52.53.4-1.0-1.8-1.8-1.5
Bone: cortical thickness0.91.01.5-0.7-1.2-1.1-0.9
Bone: cortical tissue density0.20.30.7-0.8-0.3-0.5-0.6
Condit. Reinf. active minus inactive responses0.30.30.6-0.8-0.2-0.4-0.6
Condit. Reinf. active-inactive response ratio0.70.71.0-1.0-0.6-0.8-0.9
Condit. Reinf. active responses0.20.30.7-0.8-0.2-0.3-0.6
Condit. Reinf. inactive responses0.10.10.4-0.60.10.3-0.2
Incentive salience index mean0.20.20.5-0.7-0.1-0.1-0.5
Condit. Reinf. lever presses0.10.10.3-0.5-0.00.1-0.3
Condit. Reinf. active minus inactive responses3.03.95.0-1.6-2.2-2.0-1.9
Condit. Reinf. active-inactive response ratio2.52.93.7-1.6-1.9-1.7-1.6
Condit. Reinf. active responses3.24.55.5-1.8-2.3-2.2-2.1
Condit. Reinf. inactive responses0.30.40.4-0.4-0.6-0.7-0.7
Condit. Reinf. lever presses0.70.91.2-0.8-0.9-1.0-1.1
Condit. Reinf. lever reinforcers received3.04.24.9-1.9-2.2-2.0-2.1
Conditioned reinforcement - actives0.40.81.50.0-1.2-1.1-0.6
Conditioned reinforcement - inactives0.50.70.90.90.60.80.9
Conditioned locomotion0.81.02.0-0.4-1.4-1.0-0.9
Patch foraging indifference point 0 sec2.14.04.62.21.91.82.1
Patch foraging indifference point AUC0.10.10.40.60.0-0.20.3
Delay disc. indifference point, 0s delay4.54.95.6-2.0-2.2-2.4-2.3
Delay disc. indifference point, 16s delay0.80.91.6-1.3-0.7-0.7-1.0
Delay disc. indifference point, 2s delay4.14.67.2-2.7-1.7-1.7-2.3
Delay disc. indifference point, 24s delay0.30.41.0-1.0-0.3-0.2-0.6
Delay disc. indifference point, 4s delay2.22.43.5-1.9-1.2-1.2-1.7
Delay disc. indifference point, 8s delay0.91.11.8-1.4-0.9-0.6-1.1
Indifference point function ln k0.10.10.30.20.10.50.3
Indifference point function log k0.10.10.30.20.10.50.3
Patch foraging total patch changes 0 sec2.95.56.02.52.32.12.4
Patch foraging total patch changes 12 sec1.31.72.61.61.30.91.3
Patch foraging total patch changes 18 sec2.74.15.32.31.91.62.2
Patch foraging total patch changes 24 sec1.62.73.01.61.61.71.6
Patch foraging total patch changes 6 sec2.13.24.72.21.71.31.8
Patch foraging time to switch 0 sec0.30.61.1-1.0-0.2-0.7-0.9
Patch foraging water rate 0 sec0.92.03.92.00.61.11.5
Patch foraging water rate 12 sec0.10.10.30.4-0.10.60.3
Patch foraging water rate 18 sec0.30.50.8-0.9-0.7-0.1-0.7
Patch foraging water rate 24 sec0.20.20.60.5-0.70.10.2
Patch foraging water rate 6 sec0.10.20.40.6-0.10.50.4
Seeking ratio, delayed vs. immediate footshock3.13.84.51.62.12.11.9
Distance traveled before self-admin0.30.41.0-1.0-0.4-0.2-0.6
Distance traveled after self-admin0.10.10.4-0.6-0.2-0.1-0.4
Extensor digitorum longus weight1.35.38.8-0.5-3.0-2.9-2.0
Bone: elastic displacement0.00.00.10.3-0.1-0.00.1
Bone: elastic work0.30.40.70.6-0.8-0.7-0.1
Bone: endosteal estimation0.30.71.81.30.30.50.9
Bone: endosteal perimeter0.10.20.50.0-0.7-0.5-0.4
Epididymis fat weight0.00.10.1-0.1-0.2-0.4-0.4
Delta time in closed arm before/after self-admin1.41.31.9-1.1-1.4-1.0-1.1
Delta time in open arm before/after self-admin0.70.71.70.11.30.90.4
Diff in mean of infusions in LGA sessions0.10.10.2-0.1-0.3-0.4-0.3
Delay discount exponential model param3.13.55.82.41.51.32.0
Extinction: sum of active levers before priming0.40.40.5-0.7-0.5-0.6-0.7
Active lever presses in extinction session 60.00.00.10.20.10.10.1
Bone: final force1.11.73.1-0.4-1.8-1.6-1.0
Bone: final moment0.81.22.3-0.3-1.5-1.4-0.8
Food consumed during 24 hour testing period0.91.21.91.40.90.91.0
Glucose0.30.51.3-1.1-0.2-0.3-0.7
Heart weight0.40.71.2-0.8-1.1-0.5-0.8
Delay discount hyperbolic model param3.03.45.52.31.51.42.0
Intermittent access intake day 1-15 change0.40.81.51.20.50.41.0
Intermittent access intake escalation0.40.71.51.20.50.51.0
Intermittent access intake escalation 20.60.70.90.90.70.71.0
Intermitt. access day 1 inactive lever presses0.31.01.31.10.90.91.1
Intermitt. access day 15 inactive lever presses0.30.60.80.80.90.50.9
Intermitt. access escalation Index0.10.10.2-0.5-0.3-0.1-0.4
Intermittent access day 1 total infusions0.40.61.6-1.3-0.4-0.1-0.8
Intermittent access day 15 total infusions0.00.10.2-0.4-0.10.1-0.2
Intermittent access terminal intake (last 3 days)0.00.10.1-0.4-0.1-0.1-0.2
Intermittent access total infusions0.60.81.3-1.2-0.6-0.6-1.0
Intermittent access day 1 locomotion0.70.92.1-1.5-0.5-0.2-1.0
Intermittent access day 15 total locomotion0.10.20.6-0.8-0.40.1-0.4
Intermittent access total locomotion0.60.71.5-1.2-0.6-0.2-0.9
Intermittent access standard deviation0.81.62.21.51.20.91.3
Left kidney weight1.04.58.11.7-2.6-2.8-0.7
Right kidney weight0.94.27.81.4-2.5-2.8-0.8
Cocaine induced anxiety0.81.21.4-1.1-1.0-1.0-1.2
Post-drug Anxiety3.13.34.8-2.2-1.2-1.8-2.0
Baseline Anxiety0.30.40.9-0.9-0.0-0.5-0.6
Tail length2.49.417.3-0.6-4.2-3.8-2.4
Length with tail3.615.828.70.1-5.4-5.2-2.8
Length without tail1.13.66.41.9-2.1-2.5-0.4
Times rat made contact with spout0.60.71.2-0.4-1.1-1.0-0.8
Lifetime Intake0.40.51.0-1.0-0.4-0.4-0.8
Liver weight, left2.23.68.22.91.01.12.0
Liver weight, right0.20.40.80.9-0.6-0.50.1
Locomotor activity1.21.93.0-1.1-1.7-1.4-1.2
Locomotor testing distance0.10.10.30.5-0.00.00.4
Locomotor testing rearing0.61.31.51.21.11.01.2
Locomotion in novel chamber0.10.10.10.4-0.40.30.2
Locomotion in novel chamber post-restriction0.60.92.0-0.7-1.4-0.8-0.8
Fecal boli incidents, locomotor time 10.71.12.0-0.5-1.4-1.1-0.9
Change in fecal boli incidents, locomotor task0.10.10.30.40.50.10.4
Time >=10cm from walls, locomotor time 11.01.11.8-1.3-0.6-0.9-1.2
Bouts of movement, locomotor time 10.20.20.30.0-0.6-0.6-0.3
Total resting periods, locomotor time 10.30.30.5-0.2-0.7-0.7-0.4
Rest time, locomotor task time 10.40.51.0-0.1-0.7-1.0-0.6
Distance moved, locomotor task time 10.10.20.5-0.7-0.3-0.0-0.4
Vertical activity count, locomotor time 10.10.20.4-0.5-0.6-0.2-0.4
Time >=10cm from walls, locomotor time 21.62.43.4-1.2-1.4-1.9-1.6
Bouts of movement, locomotor time 20.10.10.30.0-0.5-0.4-0.4
Total resting periods, locomotor time 20.00.10.10.3-0.3-0.2-0.1
Rest time, locomotor task time 20.00.00.0-0.00.2-0.0-0.0
Distance moved, locomotor task time 20.10.10.20.30.20.40.4
Vertical activity count, locomotor time 20.10.10.20.5-0.30.00.3
Light reinforcement 10.92.23.8-1.9-1.2-1.1-1.6
Light reinforcement 20.20.30.40.30.60.70.6
Bone: marrow area0.40.82.01.40.40.60.9
Bone: maximum diameter0.30.61.00.1-0.9-1.0-0.6
Bone: maximum force0.50.91.7-0.2-1.3-1.2-0.7
Bone: maximum moment0.30.61.2-0.0-1.1-0.9-0.5
Mean time between licks in bursts0.41.01.70.21.31.30.8
Mean num. licks in bursts0.40.60.9-0.8-0.6-0.7-1.0
Cd content in liver0.50.51.1-1.1-0.6-0.2-0.7
Co content in liver3.64.15.02.21.82.02.2
Cu content in liver0.10.10.20.30.40.40.4
Fe content in liver1.01.21.4-0.9-1.2-1.0-1.2
K content in liver0.30.30.4-0.3-0.5-0.7-0.5
Mg content in liver0.10.10.20.3-0.3-0.5-0.0
Mn content in liver0.40.40.50.60.70.60.7
Na content in liver0.40.40.9-0.1-0.8-0.9-0.5
Rb content in liver0.20.20.3-0.60.60.6-0.1
Se content in liver3.94.66.3-1.7-2.0-2.5-2.3
Sr content in liver1.10.91.41.20.80.81.1
Zn content in liver0.91.13.01.70.30.21.0
Bone: minimum diameter0.00.00.00.00.10.10.0
Time in familiar zone, hab. session 12.22.12.51.41.61.41.5
Time in novel zone, hab. session 11.21.21.5-0.9-1.2-1.2-1.1
Total zone transitions, hab. session 10.30.51.5-1.2-0.2-0.1-0.6
Total locomotion distance, hab. session 10.50.61.3-1.1-0.4-0.5-0.9
Locomotion velocity, hab. session 10.60.82.0-1.4-0.4-0.4-1.0
Time in familiar zone, hab. session 20.00.00.10.20.20.00.1
Time in novel zone, hab. session 20.10.10.3-0.5-0.2-0.1-0.3
Total zone transitions, hab. session 20.10.10.1-0.3-0.4-0.2-0.2
Total locomotion distance, hab. session 20.10.10.3-0.5-0.10.0-0.2
Locomotion velocity, hab. session 20.00.10.2-0.5-0.00.1-0.2
Novel to familiar place preference ratio0.10.10.1-0.4-0.3-0.2-0.2
Novelty place preference0.10.10.2-0.4-0.2-0.1-0.2
Time in novel zone, NPP test0.10.10.2-0.4-0.3-0.2-0.2
Total zone transitions, NPP test0.20.30.4-0.6-0.5-0.5-0.5
Total locomotion distance, NPP test1.31.82.3-1.5-1.2-1.2-1.4
Locomotion velocity, NPP test1.21.72.2-1.5-1.2-1.1-1.4
Intraocular pressure0.10.10.30.5-0.3-0.2-0.0
Delta distance traveled before/after self-admin0.40.50.70.80.60.60.7
Delta ambulatory time before/after self-admin0.60.81.00.81.00.90.9
Parametrial fat weight0.00.10.30.1-0.1-0.5-0.2
Pavlov. Cond. lever latency0.30.41.01.0-0.4-0.40.4
Pavlov. Cond. magazine entry latency0.50.70.8-0.8-0.9-0.8-0.9
Pavlov. Cond. change in total contacts1.51.62.5-1.6-0.9-1.1-1.4
Pavlov. Cond. index score0.40.51.0-1.0-0.5-0.5-0.8
Pavlov. Cond. latency score0.60.71.4-1.2-0.5-0.5-1.0
Pavlov. Cond. lever contacts0.30.41.1-1.00.20.1-0.5
Pavlov. Cond. magazine entry number0.81.01.11.01.00.91.1
Pavlov. Cond. intertrial magazine entries0.40.50.80.40.80.90.7
Pavlov. Cond. lever-magazine prob. diff.0.40.50.8-0.9-0.4-0.5-0.8
Pavlov. Cond. response bias0.60.70.9-0.9-0.7-0.7-0.9
Pavlov. Cond. lever latency1.41.92.21.51.31.21.5
Pavlov. Cond. magazine entry latency1.92.34.3-2.1-1.0-1.1-1.7
Pavlov. Cond. change in total contacts0.61.01.7-1.3-0.9-0.7-1.1
Pavlov. Cond. index score1.41.93.3-1.8-1.1-0.9-1.5
Pavlov. Cond. latency score1.41.93.2-1.8-1.0-1.0-1.5
Pavlov. Cond. lever contacts1.72.32.9-1.7-1.4-1.3-1.7
Pavlov. Cond. magazine entry number1.11.42.91.70.70.71.3
Pavlov. Cond. intertrial magazine entries0.00.00.10.3-0.2-0.10.1
Pavlov. Cond. lever-magazine prob. diff.1.62.13.8-1.9-1.1-1.0-1.6
Pavlov. Cond. response bias2.23.04.7-2.2-1.5-1.3-1.9
Time in closed arm before self-admin0.10.10.40.6-0.2-0.00.4
Time in closed arm after self-admin0.40.41.2-0.2-1.1-0.4-0.3
Time in open arm before self-admin0.80.91.2-1.1-1.1-0.6-0.9
Time in open arm after self-admin0.10.10.2-0.30.40.1-0.2
Bone: periosteal estimation0.30.71.40.0-1.2-1.0-0.6
Bone: periosteal perimeter1.22.02.5-1.1-1.6-1.5-1.5
Bone: post-yield work0.00.00.00.2-0.10.0-0.0
Progressive ratio test 1 active lever presses0.40.50.7-0.4-0.9-0.7-0.6
Progressive ratio test 1 breakpoint0.40.50.8-0.5-0.9-0.8-0.6
Progressive ratio test 1 inactive lever presses0.40.50.70.80.30.80.8
Progressive ratio test 2 active lever presses0.10.20.4-0.4-0.6-0.2-0.2
Progressive ratio test 2 breakpoint0.10.20.4-0.4-0.6-0.2-0.2
Progressive ratio test 2 inactive lever presses0.30.50.80.90.10.60.8
Incentive Sensitization - Responses0.00.00.1-0.00.20.30.2
Incentive Sensitization - Breakpoint0.00.10.1-0.00.20.30.3
Sum of active levers in priming session hrs 5-60.30.20.4-0.2-0.5-0.7-0.5
Progressive ratio0.20.30.60.20.50.80.5
Food seeking constrained by brief footshock4.55.66.82.22.62.32.3
Seeking ratio, punishment vs. effort0.10.20.50.70.3-0.00.4
Retroperitoneal fat weight0.41.52.7-0.8-0.9-1.6-1.4
Reaction time number correct0.51.01.71.30.70.81.1
Reaction time mean minus median3.89.410.7-3.3-2.8-2.9-3.3
Reaction time mean minus median AUC1.12.84.5-2.1-1.4-1.2-1.8
Reaction time num false alarms1.11.52.6-1.6-1.0-0.8-1.3
Reaction time num false alarms AUC0.60.91.6-1.2-0.7-0.5-1.0
Reaction time trials correct on left0.51.01.71.30.70.81.1
Reaction time trials on left0.50.91.51.20.60.81.0
Reaction time mean1.92.96.1-2.5-1.0-1.1-1.8
Reaction time mean AUC1.62.65.7-2.4-0.9-1.0-1.7
Median of all reaction times0.71.03.0-1.7-0.1-0.3-1.0
Reaction time omissions1.01.52.6-1.6-0.9-0.9-1.3
Reaction time false alarm rate1.52.13.5-1.9-1.1-1.0-1.6
Reaction time premature initiation rate1.01.41.7-1.3-1.2-0.8-1.3
Reaction time premature initiations0.20.30.5-0.6-0.7-0.4-0.6
Std. dev. reaction times3.15.68.2-2.9-1.9-2.0-2.6
Reaction time trials completed0.50.91.51.20.60.81.0
Reaction time trials AUC0.50.91.41.20.70.81.0
Run reversals in cocaine runway, females0.40.40.70.40.80.70.5
Run reversals in cocaine runway, males0.50.50.80.40.60.90.7
Latency to leave start box in cocaine runway0.10.10.2-0.3-0.3-0.5-0.3
Latency to leave start box in cocaine runway, F0.10.10.20.3-0.2-0.40.1
Latency to leave start box in cocaine runway, M0.10.10.3-0.5-0.1-0.0-0.3
Std. dev. time between licks in bursts0.10.10.3-0.5-0.4-0.1-0.4
Total sessions with >9 infusions0.10.10.2-0.00.40.30.2
Short access day 1 total inactive lever presses0.81.11.71.30.90.81.1
Short access day 10 total inactive lever presses1.23.05.62.41.31.01.9
Short access day 1 total infusions0.50.61.20.41.10.80.6
Short access day 10 total infusions0.10.10.2-0.40.50.20.0
Short access total infusions0.10.10.2-0.30.40.1-0.1
Short access day 1 locomotion1.11.42.7-1.6-0.9-0.7-1.2
Short access day 10 total locomotion0.51.01.10.91.11.11.0
Short access total locomotion0.20.31.0-1.0-0.1-0.1-0.5
One hour access (0.3 mA shock)0.30.30.40.70.20.70.6
Compulsive drug intake0.70.81.30.31.21.10.8
One hour access (shock baseline)0.61.01.8-0.7-1.3-0.9-0.9
Social response proportion5.25.99.2-1.7-3.0-2.6-2.2
Social responses1.01.22.0-0.7-1.4-1.1-1.1
Social time0.40.62.0-1.4-0.10.1-0.6
Soleus weight0.10.30.70.5-0.8-0.6-0.3
Bone: stiffness1.11.82.5-1.2-1.6-1.3-1.3
Tibialis anterior weight2.58.413.3-0.9-3.6-3.6-2.5
Time to tail flick, vehicle, before self-admin1.92.02.8-1.7-1.2-1.3-1.4
Time to tail flick, vehicle, after self-admin0.40.50.6-0.8-0.6-0.7-0.7
Time to tail flick, test, before self-admin0.10.10.20.4-0.4-0.50.0
Time to tail flick, test, after self-admin0.30.30.4-0.6-0.4-0.5-0.5
Delta time to tail flick, vehicle, before/after SA0.10.10.20.30.40.40.4
Delta time to tail flick, test, before/after SA0.20.20.4-0.00.60.60.2
Tibia length0.51.53.20.6-1.4-1.8-0.5
Ambulatory time before self-admin0.50.71.1-1.1-0.8-0.5-0.9
Ambulatory time after self-admin0.10.10.2-0.5-0.00.0-0.3
Bone: tissue strength2.52.53.21.81.51.41.7
Total heroin consumption1.01.23.1-1.8-0.4-0.4-1.2
Bone: trabecular number0.30.51.11.0-0.6-0.70.1
Bone: trabecular spacing0.70.91.8-0.01.41.20.6
Bone: trabecular thickness0.50.71.10.5-1.0-1.1-0.5
Bone: trabecular tissue density6.59.610.9-3.3-2.9-2.9-3.3
Water consumed over 24 hours0.30.41.11.1-0.3-0.10.5
Number of responses in last shaping day0.00.00.1-0.20.30.1-0.0