Yipf4l1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 pVTA gene expression Yipf4l1 0.1 0.1 2.0e-03 0.04 0.04 0.05 0.04 4.9e-04 3.2e-04 5.7e-05 2.9e-04
2 Liver gene expression Yipf4l1 0.28 0.13 1.3e-10 0.08 0.08 0.09 0.07 3.9e-09 6.8e-09 9.4e-10 1.0e-08
3 Adipose gene expression Yipf4l1 0.23 0.13 1.9e-12 0.1 0.1 0.1 0.1 2.1e-11 2.0e-11 9.5e-11 2.8e-11
4 Brain gene expression Yipf4l1 0.1 0.08 4.3e-06 0.06 0.05 0.07 0.05 4.4e-06 7.9e-06 6.4e-07 1.0e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density2.13.84.8-2.2-2.02.0-1.5
Area under the delay curve0.00.00.00.20.10.2-0.0
BMI with tail1.55.410.93.31.8-2.11.8
BMI without tail1.05.59.63.12.2-2.31.6
Body weight1.25.39.23.01.5-2.42.1
Weight adjusted by age0.10.20.50.6-0.00.1-0.7
Bone surface0.40.71.4-1.2-0.90.8-0.3
Bone volume1.12.22.9-1.7-1.71.5-0.9
Breakpoint value in progressive ratio session0.50.81.3-1.1-0.70.7-1.0
Number of licking bursts0.51.42.51.60.7-1.01.3
Context. condit. distance diff. score0.20.20.5-0.3-0.20.5-0.7
Locomotion velocity, session 10.40.51.10.20.4-0.81.1
Locomotion distance, session 10.60.82.3-0.7-1.50.7-0.1
Locomotion velocity, session 20.20.30.70.9-0.20.00.6
Locomotion distance, session 20.20.30.90.5-0.9-0.10.3
Locomotion velocity, session 30.10.10.10.20.20.10.4
Locomotion distance, session 30.10.10.20.10.2-0.30.5
Stereotopy head waving bouts, day 31.92.34.4-2.1-1.01.3-1.5
Stereotopy head waving duration, day 30.30.40.9-0.9-0.00.6-0.5
Locomotion velocity, session 70.10.10.30.3-0.20.10.6
Locomotion distance, session 71.01.22.31.51.1-0.90.8
Stereotopy head waving bouts, day 70.10.10.20.10.4-0.10.2
Stereotopy head waving duration, day 70.20.20.4-0.5-0.20.6-0.3
Locomotion velocity, session 80.70.81.5-1.2-1.00.7-0.6
Locomotion distance, session 80.20.20.4-0.2-0.50.5-0.6
Degree of sensitization distance0.80.92.11.51.0-0.70.3
Degree of sensitization stereotypy0.50.61.31.10.8-0.50.5
Conditioned locomotion1.92.23.7-0.7-1.11.9-1.8
Cocaine response after cond. corrected0.10.10.2-0.2-0.30.4-0.2
Cocaine response after cond. not corrected0.40.60.7-0.8-0.80.8-0.6
Cocaine response before conditioning2.12.52.8-1.7-1.51.5-1.7
Saline control response1.11.52.1-1.4-1.01.2-1.2
Bone: connectivity density1.32.12.3-1.5-1.21.5-1.5
Bone: cortical apparent density0.20.20.8-0.90.1-0.0-0.5
Bone: cortical area0.10.20.80.1-0.2-0.10.9
Bone: cortical porosity3.43.74.6-2.0-2.22.1-1.3
Bone: cortical porosity3.13.54.9-1.9-2.22.0-1.1
Bone: cortical thickness0.40.61.50.40.5-0.71.2
Bone: cortical thickness0.60.71.3-1.0-1.10.60.0
Bone: cortical tissue density0.10.20.7-0.90.0-0.1-0.4
Condit. Reinf. active minus inactive responses1.61.82.41.31.0-1.51.5
Condit. Reinf. active-inactive response ratio1.81.93.00.41.4-1.61.7
Condit. Reinf. active responses0.10.10.30.5-0.2-0.30.4
Condit. Reinf. inactive responses1.31.73.0-0.4-1.71.3-1.4
Incentive salience index mean0.20.30.70.5-0.3-0.30.8
Condit. Reinf. lever presses1.01.63.5-0.6-1.91.5-0.5
Condit. Reinf. active minus inactive responses0.71.11.2-1.1-1.01.1-1.1
Condit. Reinf. active-inactive response ratio0.30.50.8-0.4-0.80.9-0.6
Condit. Reinf. active responses0.60.81.3-0.7-0.90.8-1.1
Condit. Reinf. inactive responses0.20.20.5-0.1-0.70.4-0.5
Condit. Reinf. lever presses0.71.01.4-1.2-1.11.0-0.7
Condit. Reinf. lever reinforcers received0.60.91.1-0.8-1.00.9-1.0
Conditioned reinforcement - actives1.24.89.1-3.0-2.22.0-1.2
Conditioned reinforcement - inactives1.95.28.6-2.9-2.22.4-1.3
Conditioned locomotion2.94.39.8-3.1-2.11.5-0.9
Patch foraging indifference point 0 sec0.30.91.60.70.7-1.11.3
Patch foraging indifference point AUC0.00.10.20.30.40.10.5
Delay disc. indifference point, 0s delay1.21.32.20.91.5-0.91.2
Delay disc. indifference point, 16s delay0.00.00.0-0.1-0.1-0.0-0.1
Delay disc. indifference point, 2s delay0.10.20.2-0.40.5-0.30.4
Delay disc. indifference point, 24s delay2.03.24.8-1.9-2.21.8-1.1
Delay disc. indifference point, 4s delay0.20.30.50.70.7-0.3-0.1
Delay disc. indifference point, 8s delay0.00.00.10.20.10.30.1
Indifference point function ln k0.61.82.1-1.4-1.21.5-1.3
Indifference point function log k0.61.82.1-1.4-1.21.5-1.3
Patch foraging total patch changes 0 sec0.30.91.50.80.6-1.01.2
Patch foraging total patch changes 12 sec1.11.53.11.81.0-0.91.0
Patch foraging total patch changes 18 sec0.30.81.30.70.8-1.20.8
Patch foraging total patch changes 24 sec0.62.13.11.81.1-1.21.6
Patch foraging total patch changes 6 sec1.93.24.61.81.6-1.62.1
Patch foraging time to switch 0 sec0.20.61.40.51.2-0.80.0
Patch foraging water rate 0 sec0.51.93.0-1.6-1.71.2-0.8
Patch foraging water rate 12 sec0.00.10.4-0.00.1-0.30.6
Patch foraging water rate 18 sec0.51.12.5-1.6-1.20.8-0.4
Patch foraging water rate 24 sec0.00.10.20.1-0.0-0.30.4
Patch foraging water rate 6 sec0.30.41.2-1.1-0.60.20.1
Seeking ratio, delayed vs. immediate footshock0.10.10.2-0.00.3-0.10.5
Distance traveled before self-admin0.10.20.6-0.2-0.70.30.0
Distance traveled after self-admin0.50.91.40.41.0-1.21.0
Extensor digitorum longus weight2.28.611.5-3.3-3.43.0-1.7
Bone: elastic displacement1.62.04.3-2.1-1.11.0-1.2
Bone: elastic work0.70.93.3-1.8-0.40.4-0.4
Bone: endosteal estimation0.10.30.7-0.6-0.80.50.0
Bone: endosteal perimeter0.00.10.4-0.1-0.60.30.1
Epididymis fat weight8.040.451.67.26.0-6.75.5
Delta time in closed arm before/after self-admin0.10.10.40.30.6-0.20.1
Delta time in open arm before/after self-admin0.20.30.50.6-0.70.30.4
Diff in mean of infusions in LGA sessions0.00.10.10.40.2-0.00.2
Delay discount exponential model param0.10.10.20.10.2-0.40.2
Extinction: sum of active levers before priming0.30.40.9-0.2-0.70.9-0.3
Active lever presses in extinction session 62.12.13.6-0.8-1.81.9-1.0
Bone: final force0.10.20.60.0-0.10.10.8
Bone: final moment0.10.10.5-0.10.1-0.00.7
Food consumed during 24 hour testing period0.10.20.50.5-0.1-0.20.7
Glucose0.71.12.00.61.4-1.20.9
Heart weight1.21.93.21.51.8-1.30.7
Delay discount hyperbolic model param0.00.00.0-0.0-0.1-0.20.1
Intermittent access intake day 1-15 change0.31.85.6-2.4-0.70.3-0.9
Intermittent access intake escalation0.21.24.3-2.1-0.2-0.2-0.7
Intermittent access intake escalation 20.50.82.7-1.60.4-0.7-0.2
Intermitt. access day 1 inactive lever presses0.11.12.5-0.3-1.31.6-0.2
Intermitt. access day 15 inactive lever presses0.20.91.9-0.9-0.91.4-0.2
Intermitt. access escalation Index1.85.810.51.93.2-2.71.3
Intermittent access day 1 total infusions0.61.94.1-0.4-1.32.0-1.2
Intermittent access day 15 total infusions0.92.23.5-1.9-1.31.4-1.2
Intermittent access terminal intake (last 3 days)1.52.64.3-2.1-1.41.7-1.2
Intermittent access total infusions3.13.65.1-1.7-2.12.2-1.5
Intermittent access day 1 locomotion1.32.33.7-1.0-1.81.9-1.3
Intermittent access day 15 total locomotion0.00.10.2-0.4-0.30.10.3
Intermittent access total locomotion1.31.62.8-1.1-1.71.3-0.8
Intermittent access standard deviation0.41.92.8-1.7-1.71.3-0.7
Left kidney weight0.21.42.6-0.3-1.61.5-1.0
Right kidney weight0.00.20.40.6-0.50.20.4
Cocaine induced anxiety0.10.20.7-0.90.3-0.1-0.2
Post-drug Anxiety1.41.62.01.41.2-1.31.1
Baseline Anxiety2.03.36.32.51.3-1.71.6
Tail length0.10.31.2-1.10.1-0.3-0.1
Length with tail0.10.30.7-0.5-0.9-0.30.5
Length without tail0.21.24.0-0.2-2.00.80.3
Times rat made contact with spout1.21.32.7-1.3-1.70.9-0.3
Lifetime Intake3.34.15.5-1.9-2.22.3-1.5
Liver weight, left1.52.63.40.91.8-1.81.7
Liver weight, right2.33.95.71.81.7-2.02.4
Locomotor activity0.71.12.31.40.1-0.41.5
Locomotor testing distance0.30.71.31.10.2-0.31.1
Locomotor testing rearing0.20.71.4-0.2-1.21.10.2
Locomotion in novel chamber0.40.50.70.7-0.80.40.8
Locomotion in novel chamber post-restriction0.92.74.21.32.0-2.11.0
Fecal boli incidents, locomotor time 10.82.22.8-1.6-1.61.7-0.8
Change in fecal boli incidents, locomotor task3.03.25.61.32.4-2.20.7
Time >=10cm from walls, locomotor time 10.50.71.1-0.6-1.10.7-0.8
Bouts of movement, locomotor time 10.30.40.90.80.2-0.10.9
Total resting periods, locomotor time 10.20.30.50.70.1-0.10.7
Rest time, locomotor task time 10.81.32.20.61.3-0.81.5
Distance moved, locomotor task time 10.00.10.4-0.1-0.70.1-0.3
Vertical activity count, locomotor time 10.00.30.5-0.7-0.5-0.1-0.7
Time >=10cm from walls, locomotor time 20.72.05.1-2.3-0.71.1-1.0
Bouts of movement, locomotor time 20.30.91.21.10.7-0.81.1
Total resting periods, locomotor time 20.31.11.71.20.9-0.81.3
Rest time, locomotor task time 20.10.20.60.50.10.00.8
Distance moved, locomotor task time 20.20.20.9-1.00.1-0.0-0.2
Vertical activity count, locomotor time 20.20.51.3-1.10.50.1-0.7
Light reinforcement 10.10.50.7-0.8-0.40.8-0.8
Light reinforcement 20.61.43.2-1.8-0.20.8-1.3
Bone: marrow area0.10.40.7-0.7-0.90.50.1
Bone: maximum diameter0.00.10.1-0.2-0.30.10.3
Bone: maximum force0.10.20.6-0.2-0.30.20.8
Bone: maximum moment0.10.20.5-0.3-0.20.20.7
Mean time between licks in bursts0.42.22.71.61.6-1.31.3
Mean num. licks in bursts0.82.24.7-2.2-1.21.1-1.1
Cd content in liver0.00.00.10.2-0.0-0.30.1
Co content in liver5.16.07.8-1.8-2.82.6-2.5
Cu content in liver0.80.91.60.7-0.81.0-1.3
Fe content in liver2.43.05.2-1.6-2.31.6-1.3
K content in liver0.50.51.51.20.3-0.20.5
Mg content in liver0.10.10.40.60.40.1-0.2
Mn content in liver0.60.60.70.70.8-0.80.8
Na content in liver1.41.62.9-1.7-0.91.4-0.9
Rb content in liver0.20.30.70.80.4-0.2-0.4
Se content in liver0.00.00.10.3-0.2-0.2-0.1
Sr content in liver0.20.20.6-0.8-0.50.0-0.1
Zn content in liver1.01.23.81.90.8-0.5-0.2
Bone: minimum diameter0.50.91.81.30.2-0.61.2
Time in familiar zone, hab. session 10.70.81.31.20.7-0.61.0
Time in novel zone, hab. session 10.10.20.30.00.3-0.60.4
Total zone transitions, hab. session 10.30.41.3-0.4-1.10.50.3
Total locomotion distance, hab. session 10.71.02.3-0.9-1.50.9-0.5
Locomotion velocity, hab. session 11.11.62.7-1.1-1.61.2-0.9
Time in familiar zone, hab. session 20.50.61.1-0.01.0-0.71.0
Time in novel zone, hab. session 20.10.20.30.4-0.40.1-0.6
Total zone transitions, hab. session 20.20.30.7-0.1-0.5-0.40.8
Total locomotion distance, hab. session 20.20.20.40.1-0.5-0.50.6
Locomotion velocity, hab. session 20.20.20.50.1-0.7-0.30.5
Novel to familiar place preference ratio0.30.40.60.60.1-0.70.8
Novelty place preference0.50.71.11.00.2-0.81.0
Time in novel zone, NPP test0.50.61.01.00.0-0.71.0
Total zone transitions, NPP test0.91.43.3-0.6-1.81.3-0.3
Total locomotion distance, NPP test1.41.94.4-0.8-2.11.4-0.8
Locomotion velocity, NPP test1.62.34.3-1.3-2.11.6-1.0
Intraocular pressure2.43.95.82.02.2-2.40.9
Delta distance traveled before/after self-admin2.32.53.91.42.0-1.61.2
Delta ambulatory time before/after self-admin0.50.92.10.41.4-0.90.6
Parametrial fat weight18.343.048.26.96.9-6.36.1
Pavlov. Cond. lever latency0.60.71.20.31.1-1.10.7
Pavlov. Cond. magazine entry latency0.10.10.30.4-0.60.2-0.1
Pavlov. Cond. change in total contacts0.10.10.20.4-0.40.4-0.2
Pavlov. Cond. index score0.20.30.50.3-0.70.6-0.4
Pavlov. Cond. latency score0.20.20.40.2-0.70.5-0.3
Pavlov. Cond. lever contacts0.60.71.3-0.1-1.01.1-0.7
Pavlov. Cond. magazine entry number0.20.30.8-0.30.9-0.4-0.1
Pavlov. Cond. intertrial magazine entries2.02.44.3-1.4-1.01.4-2.1
Pavlov. Cond. lever-magazine prob. diff.0.50.61.00.1-1.01.0-0.7
Pavlov. Cond. response bias0.80.91.7-0.2-1.31.3-0.6
Pavlov. Cond. lever latency0.20.30.60.40.5-0.70.4
Pavlov. Cond. magazine entry latency0.00.00.10.10.3-0.20.1
Pavlov. Cond. change in total contacts0.00.00.1-0.1-0.20.30.1
Pavlov. Cond. index score0.10.20.4-0.6-0.40.5-0.2
Pavlov. Cond. latency score0.10.20.4-0.6-0.30.5-0.2
Pavlov. Cond. lever contacts0.10.20.4-0.2-0.40.6-0.3
Pavlov. Cond. magazine entry number0.10.10.1-0.3-0.30.2-0.3
Pavlov. Cond. intertrial magazine entries0.91.93.80.51.0-2.01.5
Pavlov. Cond. lever-magazine prob. diff.0.00.10.2-0.5-0.10.20.1
Pavlov. Cond. response bias0.20.30.6-0.4-0.60.8-0.5
Time in closed arm before self-admin0.10.20.50.1-0.7-0.30.3
Time in closed arm after self-admin0.30.30.50.6-0.2-0.60.7
Time in open arm before self-admin0.10.10.20.20.4-0.00.1
Time in open arm after self-admin0.00.00.10.0-0.00.30.1
Bone: periosteal estimation0.20.40.9-0.4-0.90.60.3
Bone: periosteal perimeter0.00.10.1-0.0-0.40.20.3
Bone: post-yield work1.32.23.1-1.7-1.81.6-0.5
Progressive ratio test 1 active lever presses1.22.13.9-0.7-1.72.0-1.0
Progressive ratio test 1 breakpoint1.22.04.0-0.7-1.62.0-1.0
Progressive ratio test 1 inactive lever presses1.64.17.5-1.3-2.32.7-1.4
Progressive ratio test 2 active lever presses2.23.14.7-2.2-1.91.7-1.2
Progressive ratio test 2 breakpoint2.22.84.4-2.1-1.71.6-1.1
Progressive ratio test 2 inactive lever presses1.03.36.5-2.5-1.81.8-0.8
Incentive Sensitization - Responses1.02.86.0-2.5-1.51.3-1.1
Incentive Sensitization - Breakpoint1.02.25.4-2.3-1.21.1-0.9
Sum of active levers in priming session hrs 5-60.10.10.20.50.3-0.30.2
Progressive ratio0.00.10.2-0.2-0.50.20.3
Food seeking constrained by brief footshock13.516.820.8-3.3-4.54.6-3.9
Seeking ratio, punishment vs. effort0.71.62.6-1.1-1.01.3-1.6
Retroperitoneal fat weight26.5118.7135.911.711.2-11.29.3
Reaction time number correct0.20.61.2-0.8-1.10.5-0.6
Reaction time mean minus median0.00.20.50.5-0.10.0-0.7
Reaction time mean minus median AUC0.00.20.80.90.1-0.3-0.1
Reaction time num false alarms1.32.14.22.00.8-1.21.5
Reaction time num false alarms AUC1.02.24.22.10.8-1.21.5
Reaction time trials correct on left0.20.61.2-0.8-1.10.5-0.6
Reaction time trials on left0.20.61.2-0.7-1.10.5-0.6
Reaction time mean0.20.40.60.70.7-0.4-0.8
Reaction time mean AUC0.10.30.50.60.4-0.2-0.7
Median of all reaction times0.20.30.60.30.8-0.3-0.7
Reaction time omissions0.61.03.61.9-0.50.00.1
Reaction time false alarm rate2.23.04.72.21.4-1.51.8
Reaction time premature initiation rate0.00.10.2-0.20.1-0.40.2
Reaction time premature initiations0.00.10.4-0.6-0.3-0.1-0.2
Std. dev. reaction times0.10.51.31.10.3-0.5-0.5
Reaction time trials completed0.20.61.2-0.7-1.10.5-0.6
Reaction time trials AUC0.20.61.2-0.7-1.10.6-0.7
Run reversals in cocaine runway, females0.50.61.3-0.6-0.60.6-1.2
Run reversals in cocaine runway, males0.70.71.5-1.2-0.90.80.1
Latency to leave start box in cocaine runway0.20.30.8-0.90.00.6-0.1
Latency to leave start box in cocaine runway, F0.10.10.3-0.20.50.10.4
Latency to leave start box in cocaine runway, M0.60.51.2-1.1-0.40.7-0.5
Std. dev. time between licks in bursts0.51.01.81.40.8-0.90.8
Total sessions with >9 infusions2.12.63.4-1.8-1.91.6-1.1
Short access day 1 total inactive lever presses2.04.05.0-2.2-1.92.2-1.6
Short access day 10 total inactive lever presses0.10.41.1-0.3-0.51.1-0.4
Short access day 1 total infusions1.83.74.2-2.0-1.92.1-1.6
Short access day 10 total infusions1.82.94.7-1.6-1.42.2-1.6
Short access total infusions1.52.23.2-1.4-1.51.8-1.2
Short access day 1 locomotion1.93.25.7-1.4-2.41.9-1.2
Short access day 10 total locomotion0.51.92.4-1.4-1.51.6-0.9
Short access total locomotion1.01.52.4-1.2-1.61.4-0.5
One hour access (0.3 mA shock)3.03.510.3-3.2-1.41.1-0.7
Compulsive drug intake2.43.66.30.52.5-2.31.6
One hour access (shock baseline)2.56.78.4-2.9-2.82.5-1.9
Social response proportion0.20.21.0-1.00.1-0.0-0.1
Social responses0.20.30.60.20.5-0.50.7
Social time0.10.20.5-0.40.10.1-0.7
Soleus weight2.47.18.5-2.9-2.82.7-2.1
Bone: stiffness0.30.51.01.00.5-0.10.8
Tibialis anterior weight0.72.64.2-2.1-1.81.5-0.7
Time to tail flick, vehicle, before self-admin0.50.71.40.9-1.20.6-0.5
Time to tail flick, vehicle, after self-admin1.93.95.32.31.7-2.21.7
Time to tail flick, test, before self-admin0.80.92.5-0.7-1.60.7-0.1
Time to tail flick, test, after self-admin0.90.91.7-0.9-0.91.3-0.5
Delta time to tail flick, vehicle, before/after SA2.12.33.41.11.8-1.61.3
Delta time to tail flick, test, before/after SA1.21.42.5-1.6-0.21.3-1.2
Tibia length0.61.74.10.40.8-1.42.0
Ambulatory time before self-admin0.10.20.7-0.2-0.80.40.0
Ambulatory time after self-admin0.30.50.90.40.9-0.70.6
Bone: tissue strength0.80.81.90.51.4-0.90.7
Total heroin consumption2.42.85.3-2.3-1.31.2-1.6
Bone: trabecular number1.93.64.7-2.2-1.91.9-1.6
Bone: trabecular spacing0.71.01.41.20.7-0.91.1
Bone: trabecular thickness0.40.60.7-0.8-0.70.9-0.8
Bone: trabecular tissue density0.10.20.3-0.2-0.50.5-0.5
Water consumed over 24 hours0.20.40.70.7-0.4-0.40.9
Number of responses in last shaping day1.41.83.2-1.1-1.01.4-1.8