Yipf4l1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 pVTA gene expression Yipf4l1 0.1 0.1 2.0e-03 0.04 0.04 0.05 0.04 4.9e-04 3.2e-04 5.7e-05 2.8e-04
2 Liver gene expression Yipf4l1 0.28 0.13 1.3e-10 0.08 0.08 0.09 0.07 3.9e-09 6.8e-09 9.3e-10 1.1e-08
3 Adipose gene expression Yipf4l1 0.23 0.13 1.9e-12 0.1 0.1 0.1 0.1 2.1e-11 2.0e-11 9.6e-11 2.8e-11
4 Brain gene expression Yipf4l1 0.1 0.08 4.3e-06 0.06 0.05 0.07 0.05 4.4e-06 7.9e-06 6.6e-07 1.0e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density2.23.84.82.22.02.01.5
Area under the delay curve0.00.00.0-0.2-0.10.2-0.0
BMI with tail1.55.310.9-3.3-1.8-2.1-1.7
BMI without tail1.85.59.6-3.1-2.2-2.3-1.5
Body weight1.25.29.2-3.0-1.5-2.4-2.0
Weight adjusted by age0.20.20.6-0.60.00.10.8
Bone surface0.40.71.41.20.90.80.3
Bone volume1.22.12.91.71.71.50.9
Breakpoint value in progressive ratio session0.70.81.31.10.70.71.0
Number of licking bursts0.91.42.5-1.6-0.8-1.0-1.3
Context. condit. distance diff. score0.20.20.50.30.10.50.7
Locomotion velocity, session 10.50.51.2-0.2-0.4-0.8-1.1
Locomotion distance, session 10.60.82.30.71.50.70.1
Locomotion velocity, session 20.20.30.7-0.90.20.0-0.6
Locomotion distance, session 20.20.30.9-0.51.0-0.1-0.3
Locomotion velocity, session 30.10.10.1-0.2-0.20.1-0.4
Locomotion distance, session 30.10.10.2-0.1-0.2-0.3-0.5
Stereotopy head waving bouts, day 32.02.34.42.11.01.31.5
Stereotopy head waving duration, day 30.30.40.90.90.00.60.5
Locomotion velocity, session 70.10.10.3-0.30.20.1-0.6
Locomotion distance, session 71.01.22.3-1.5-1.1-0.9-0.7
Stereotopy head waving bouts, day 70.10.10.2-0.1-0.4-0.1-0.2
Stereotopy head waving duration, day 70.20.20.40.50.20.60.3
Locomotion velocity, session 80.70.81.51.21.00.70.6
Locomotion distance, session 80.10.20.30.20.50.50.6
Degree of sensitization distance0.90.92.1-1.5-0.9-0.7-0.2
Degree of sensitization stereotypy0.60.61.3-1.1-0.9-0.5-0.5
Conditioned locomotion1.92.13.70.71.11.91.8
Cocaine response after cond. corrected0.10.10.20.20.30.40.2
Cocaine response after cond. not corrected0.50.50.70.80.80.80.6
Cocaine response before conditioning2.12.52.81.71.51.51.7
Saline control response1.11.52.11.41.01.21.2
Bone: connectivity density1.32.02.31.51.11.51.5
Bone: cortical apparent density0.20.20.80.9-0.1-0.00.5
Bone: cortical area0.20.20.9-0.10.2-0.1-0.9
Bone: cortical porosity3.53.74.82.02.22.11.3
Bone: cortical porosity3.23.55.01.92.22.01.1
Bone: cortical thickness0.40.61.5-0.4-0.5-0.7-1.2
Bone: cortical thickness0.60.71.31.01.20.6-0.1
Bone: cortical tissue density0.20.20.70.9-0.0-0.10.4
Condit. Reinf. active minus inactive responses1.61.72.3-1.3-1.0-1.5-1.5
Condit. Reinf. active-inactive response ratio1.81.92.9-0.4-1.4-1.6-1.7
Condit. Reinf. active responses0.10.10.3-0.50.2-0.3-0.4
Condit. Reinf. inactive responses1.41.73.00.41.71.31.4
Incentive salience index mean0.20.30.7-0.50.3-0.3-0.8
Condit. Reinf. lever presses1.11.53.40.61.81.50.4
Condit. Reinf. active minus inactive responses0.91.11.21.11.01.11.1
Condit. Reinf. active-inactive response ratio0.50.50.80.40.80.90.6
Condit. Reinf. active responses0.60.81.30.70.90.81.1
Condit. Reinf. inactive responses0.20.20.50.10.70.40.5
Condit. Reinf. lever presses0.71.01.41.21.11.00.7
Condit. Reinf. lever reinforcers received0.60.91.20.81.10.91.0
Conditioned reinforcement - actives2.84.89.13.02.22.01.2
Conditioned reinforcement - inactives3.55.28.62.92.22.41.3
Conditioned locomotion3.44.49.83.12.21.50.9
Patch foraging indifference point 0 sec0.50.91.6-0.7-0.7-1.1-1.3
Patch foraging indifference point AUC0.10.10.2-0.3-0.40.1-0.5
Delay disc. indifference point, 0s delay1.21.32.3-0.9-1.5-0.9-1.2
Delay disc. indifference point, 16s delay0.00.00.00.10.1-0.00.1
Delay disc. indifference point, 2s delay0.10.20.20.4-0.5-0.3-0.4
Delay disc. indifference point, 24s delay2.93.24.81.92.21.81.1
Delay disc. indifference point, 4s delay0.20.30.5-0.7-0.7-0.30.1
Delay disc. indifference point, 8s delay0.00.00.1-0.2-0.00.3-0.2
Indifference point function ln k1.01.82.11.41.21.51.2
Indifference point function log k1.01.82.11.41.21.51.2
Patch foraging total patch changes 0 sec0.50.91.5-0.8-0.6-1.0-1.2
Patch foraging total patch changes 12 sec1.11.43.1-1.8-1.0-0.9-1.0
Patch foraging total patch changes 18 sec0.50.81.3-0.7-0.8-1.2-0.8
Patch foraging total patch changes 24 sec1.22.13.1-1.8-1.1-1.2-1.6
Patch foraging total patch changes 6 sec2.13.24.6-1.8-1.6-1.6-2.2
Patch foraging time to switch 0 sec0.30.61.3-0.5-1.1-0.80.0
Patch foraging water rate 0 sec0.91.93.01.61.71.20.8
Patch foraging water rate 12 sec0.10.10.40.0-0.1-0.3-0.6
Patch foraging water rate 18 sec0.71.12.51.61.10.80.3
Patch foraging water rate 24 sec0.00.10.2-0.10.0-0.3-0.4
Patch foraging water rate 6 sec0.30.41.21.10.60.2-0.1
Seeking ratio, delayed vs. immediate footshock0.10.10.20.0-0.3-0.1-0.5
Distance traveled before self-admin0.10.20.60.20.80.3-0.0
Distance traveled after self-admin0.70.91.4-0.4-1.0-1.2-1.0
Extensor digitorum longus weight2.28.611.53.33.43.01.6
Bone: elastic displacement1.72.04.32.11.11.01.2
Bone: elastic work0.70.93.31.80.40.40.4
Bone: endosteal estimation0.20.30.70.60.80.5-0.1
Bone: endosteal perimeter0.10.10.40.10.60.3-0.1
Epididymis fat weight11.639.751.6-7.2-5.9-6.7-5.3
Delta time in closed arm before/after self-admin0.10.10.4-0.3-0.6-0.2-0.1
Delta time in open arm before/after self-admin0.30.30.4-0.60.70.3-0.4
Diff in mean of infusions in LGA sessions0.00.10.1-0.4-0.2-0.0-0.1
Delay discount exponential model param0.10.10.2-0.1-0.2-0.4-0.2
Extinction: sum of active levers before priming0.40.40.90.20.70.90.3
Active lever presses in extinction session 62.12.13.60.81.81.91.0
Bone: final force0.10.20.6-0.00.00.1-0.8
Bone: final moment0.10.10.50.1-0.1-0.0-0.7
Food consumed during 24 hour testing period0.20.20.5-0.50.1-0.2-0.7
Glucose0.71.11.9-0.6-1.4-1.2-0.8
Heart weight1.31.93.1-1.5-1.8-1.3-0.7
Delay discount hyperbolic model param0.00.00.00.00.1-0.2-0.1
Intermittent access intake day 1-15 change0.91.85.62.40.70.30.9
Intermittent access intake escalation0.61.24.32.10.2-0.20.7
Intermittent access intake escalation 20.70.82.71.6-0.3-0.70.2
Intermitt. access day 1 inactive lever presses0.31.12.50.31.31.60.1
Intermitt. access day 15 inactive lever presses0.40.91.90.90.91.40.2
Intermitt. access escalation Index4.05.710.3-1.9-3.2-2.7-1.3
Intermittent access day 1 total infusions1.11.84.10.41.32.01.1
Intermittent access day 15 total infusions1.42.13.51.91.21.41.2
Intermittent access terminal intake (last 3 days)2.02.64.32.11.41.71.1
Intermittent access total infusions3.03.65.11.72.12.21.4
Intermittent access day 1 locomotion1.82.33.71.01.71.91.2
Intermittent access day 15 total locomotion0.00.10.20.40.30.1-0.3
Intermittent access total locomotion1.31.62.81.11.71.30.8
Intermittent access standard deviation0.91.92.81.71.71.30.7
Left kidney weight0.31.52.70.31.61.51.0
Right kidney weight0.00.20.4-0.60.50.2-0.4
Cocaine induced anxiety0.20.20.70.9-0.3-0.10.2
Post-drug Anxiety1.51.62.0-1.4-1.2-1.3-1.1
Baseline Anxiety2.93.36.3-2.5-1.3-1.7-1.6
Tail length0.10.31.21.1-0.0-0.30.1
Length with tail0.10.30.80.50.9-0.3-0.4
Length without tail0.41.24.10.22.00.8-0.3
Times rat made contact with spout1.21.32.71.31.60.90.3
Lifetime Intake3.34.15.51.92.22.31.5
Liver weight, left1.62.63.4-0.9-1.8-1.8-1.7
Liver weight, right2.23.95.5-1.8-1.7-2.0-2.3
Locomotor activity0.71.12.2-1.4-0.1-0.4-1.5
Locomotor testing distance0.40.71.3-1.1-0.3-0.3-1.1
Locomotor testing rearing0.30.71.40.21.21.1-0.2
Locomotion in novel chamber0.40.50.7-0.70.80.4-0.8
Locomotion in novel chamber post-restriction1.62.74.2-1.3-1.9-2.1-1.0
Fecal boli incidents, locomotor time 11.52.12.81.61.61.70.8
Change in fecal boli incidents, locomotor task3.13.15.4-1.3-2.3-2.2-0.6
Time >=10cm from walls, locomotor time 10.70.71.20.61.10.70.8
Bouts of movement, locomotor time 10.40.41.0-0.8-0.2-0.1-1.0
Total resting periods, locomotor time 10.30.30.6-0.7-0.2-0.1-0.8
Rest time, locomotor task time 11.01.32.3-0.6-1.3-0.8-1.5
Distance moved, locomotor task time 10.10.10.40.10.60.10.3
Vertical activity count, locomotor time 10.10.30.60.70.5-0.10.7
Time >=10cm from walls, locomotor time 21.32.05.12.30.81.11.0
Bouts of movement, locomotor time 20.60.91.3-1.1-0.7-0.8-1.1
Total resting periods, locomotor time 20.71.21.8-1.2-1.0-0.8-1.3
Rest time, locomotor task time 20.20.20.7-0.5-0.10.0-0.8
Distance moved, locomotor task time 20.20.20.91.0-0.1-0.00.2
Vertical activity count, locomotor time 20.40.51.31.1-0.50.10.7
Light reinforcement 10.20.50.70.80.40.80.7
Light reinforcement 20.91.43.21.80.20.81.3
Bone: marrow area0.20.40.70.70.90.5-0.1
Bone: maximum diameter0.00.10.10.20.30.1-0.4
Bone: maximum force0.10.20.70.20.30.2-0.8
Bone: maximum moment0.10.20.50.30.20.2-0.7
Mean time between licks in bursts0.92.22.8-1.6-1.7-1.3-1.3
Mean num. licks in bursts1.42.24.72.21.31.11.1
Cd content in liver0.00.00.1-0.20.1-0.3-0.1
Co content in liver5.15.97.71.82.82.62.5
Cu content in liver0.80.91.7-0.70.81.01.3
Fe content in liver2.53.05.21.62.31.61.2
K content in liver0.50.51.5-1.2-0.3-0.2-0.5
Mg content in liver0.10.10.4-0.6-0.40.10.2
Mn content in liver0.50.60.7-0.7-0.8-0.8-0.8
Na content in liver1.51.62.91.70.81.40.9
Rb content in liver0.20.30.7-0.8-0.4-0.20.4
Se content in liver0.00.10.1-0.30.3-0.20.2
Sr content in liver0.20.20.60.80.50.00.1
Zn content in liver1.11.23.8-1.9-0.8-0.50.2
Bone: minimum diameter0.50.91.8-1.3-0.2-0.6-1.2
Time in familiar zone, hab. session 10.80.81.3-1.2-0.7-0.6-1.0
Time in novel zone, hab. session 10.10.10.3-0.0-0.3-0.6-0.4
Total zone transitions, hab. session 10.30.41.30.41.10.5-0.4
Total locomotion distance, hab. session 10.71.02.20.91.50.90.5
Locomotion velocity, hab. session 11.11.52.61.11.61.20.8
Time in familiar zone, hab. session 20.60.61.10.0-1.0-0.7-1.0
Time in novel zone, hab. session 20.20.20.4-0.40.40.10.6
Total zone transitions, hab. session 20.20.30.70.10.5-0.4-0.9
Total locomotion distance, hab. session 20.20.20.4-0.10.5-0.5-0.7
Locomotion velocity, hab. session 20.20.20.5-0.10.7-0.3-0.5
Novel to familiar place preference ratio0.30.40.7-0.6-0.1-0.7-0.8
Novelty place preference0.70.71.1-1.0-0.2-0.8-1.1
Time in novel zone, NPP test0.60.61.0-1.00.0-0.7-1.0
Total zone transitions, NPP test1.01.43.30.61.81.30.3
Total locomotion distance, NPP test1.41.94.40.82.11.40.8
Locomotion velocity, NPP test1.62.34.21.32.11.60.9
Intraocular pressure2.73.85.8-2.0-2.2-2.4-0.8
Delta distance traveled before/after self-admin2.42.54.0-1.4-2.0-1.6-1.2
Delta ambulatory time before/after self-admin0.70.92.1-0.4-1.5-0.9-0.6
Parametrial fat weight18.142.648.2-6.9-6.9-6.3-5.9
Pavlov. Cond. lever latency0.60.71.2-0.3-1.1-1.1-0.6
Pavlov. Cond. magazine entry latency0.10.10.3-0.40.60.20.1
Pavlov. Cond. change in total contacts0.10.10.2-0.40.30.40.2
Pavlov. Cond. index score0.20.30.5-0.30.70.60.4
Pavlov. Cond. latency score0.10.20.4-0.20.60.50.3
Pavlov. Cond. lever contacts0.60.71.30.11.01.10.7
Pavlov. Cond. magazine entry number0.20.20.70.3-0.8-0.40.1
Pavlov. Cond. intertrial magazine entries2.02.44.41.41.11.42.1
Pavlov. Cond. lever-magazine prob. diff.0.50.61.0-0.10.91.00.7
Pavlov. Cond. response bias0.70.91.70.21.31.30.6
Pavlov. Cond. lever latency0.20.30.6-0.4-0.5-0.7-0.4
Pavlov. Cond. magazine entry latency0.00.00.1-0.1-0.3-0.2-0.1
Pavlov. Cond. change in total contacts0.00.00.10.10.20.3-0.1
Pavlov. Cond. index score0.20.20.40.60.40.50.2
Pavlov. Cond. latency score0.20.20.40.60.30.50.2
Pavlov. Cond. lever contacts0.10.20.40.20.40.60.3
Pavlov. Cond. magazine entry number0.10.10.10.30.30.20.3
Pavlov. Cond. intertrial magazine entries1.21.83.8-0.5-1.0-2.0-1.5
Pavlov. Cond. lever-magazine prob. diff.0.10.10.20.50.20.2-0.1
Pavlov. Cond. response bias0.20.30.60.40.60.80.5
Time in closed arm before self-admin0.10.20.5-0.10.7-0.3-0.3
Time in closed arm after self-admin0.30.30.4-0.60.2-0.6-0.7
Time in open arm before self-admin0.10.10.2-0.2-0.5-0.0-0.1
Time in open arm after self-admin0.00.00.1-0.0-0.00.3-0.2
Bone: periosteal estimation0.20.40.80.40.90.6-0.3
Bone: periosteal perimeter0.00.10.10.00.30.2-0.3
Bone: post-yield work1.52.23.11.71.81.60.5
Progressive ratio test 1 active lever presses1.62.03.90.71.62.01.0
Progressive ratio test 1 breakpoint1.72.04.00.71.62.01.0
Progressive ratio test 1 inactive lever presses2.84.17.51.32.32.71.4
Progressive ratio test 2 active lever presses2.73.14.72.21.91.71.1
Progressive ratio test 2 breakpoint2.42.74.42.11.71.61.1
Progressive ratio test 2 inactive lever presses2.03.36.52.51.81.80.7
Incentive Sensitization - Responses2.02.86.02.51.51.31.1
Incentive Sensitization - Breakpoint1.72.25.42.31.21.10.9
Sum of active levers in priming session hrs 5-60.10.10.2-0.5-0.3-0.3-0.2
Progressive ratio0.10.10.20.20.50.2-0.3
Food seeking constrained by brief footshock13.716.820.83.34.54.63.9
Seeking ratio, punishment vs. effort1.11.62.61.11.01.31.6
Retroperitoneal fat weight27.4117.0135.9-11.7-11.2-11.2-9.0
Reaction time number correct0.30.61.10.81.10.50.6
Reaction time mean minus median0.10.20.6-0.50.10.00.8
Reaction time mean minus median AUC0.10.20.8-0.9-0.1-0.30.2
Reaction time num false alarms1.52.14.2-2.0-0.8-1.2-1.5
Reaction time num false alarms AUC1.42.24.2-2.1-0.8-1.2-1.5
Reaction time trials correct on left0.30.61.10.81.10.50.6
Reaction time trials on left0.30.61.10.71.10.50.6
Reaction time mean0.30.40.7-0.7-0.7-0.40.8
Reaction time mean AUC0.20.30.6-0.6-0.4-0.20.8
Median of all reaction times0.20.30.6-0.3-0.8-0.30.7
Reaction time omissions0.60.93.6-1.90.50.0-0.1
Reaction time false alarm rate2.23.04.7-2.2-1.4-1.5-1.8
Reaction time premature initiation rate0.00.10.20.2-0.1-0.4-0.2
Reaction time premature initiations0.10.10.40.60.3-0.10.2
Std. dev. reaction times0.30.51.3-1.1-0.3-0.50.6
Reaction time trials completed0.30.61.10.71.10.50.6
Reaction time trials AUC0.30.61.20.71.10.60.7
Run reversals in cocaine runway, females0.60.61.30.60.60.61.2
Run reversals in cocaine runway, males0.70.71.51.20.90.8-0.1
Latency to leave start box in cocaine runway0.30.30.80.9-0.00.60.1
Latency to leave start box in cocaine runway, F0.10.10.30.2-0.50.1-0.4
Latency to leave start box in cocaine runway, M0.60.51.21.10.40.70.5
Std. dev. time between licks in bursts0.71.01.8-1.4-0.8-0.9-0.8
Total sessions with >9 infusions2.12.63.51.81.91.61.1
Short access day 1 total inactive lever presses3.03.95.02.21.82.21.6
Short access day 10 total inactive lever presses0.20.41.10.30.41.10.4
Short access day 1 total infusions2.83.74.22.01.92.11.6
Short access day 10 total infusions2.32.94.71.61.42.21.5
Short access total infusions1.72.23.21.41.51.81.2
Short access day 1 locomotion2.63.25.71.42.41.91.2
Short access day 10 total locomotion1.01.92.41.41.51.60.8
Short access total locomotion1.31.52.51.21.61.40.4
One hour access (0.3 mA shock)3.13.510.33.21.51.10.6
Compulsive drug intake3.03.66.3-0.5-2.5-2.3-1.6
One hour access (shock baseline)4.46.78.42.92.92.51.9
Social response proportion0.20.21.01.0-0.0-0.00.2
Social responses0.20.30.5-0.2-0.4-0.5-0.7
Social time0.20.20.60.4-0.10.10.8
Soleus weight2.46.98.52.92.82.72.0
Bone: stiffness0.30.51.0-1.0-0.5-0.1-0.8
Tibialis anterior weight0.72.54.22.11.81.50.6
Time to tail flick, vehicle, before self-admin0.60.71.3-0.91.20.60.5
Time to tail flick, vehicle, after self-admin2.93.85.3-2.3-1.6-2.2-1.6
Time to tail flick, test, before self-admin0.80.92.50.71.60.70.1
Time to tail flick, test, after self-admin0.90.91.70.90.91.30.5
Delta time to tail flick, vehicle, before/after SA2.42.33.4-1.1-1.8-1.6-1.3
Delta time to tail flick, test, before/after SA1.41.42.51.60.21.31.1
Tibia length0.61.74.0-0.4-0.8-1.4-2.0
Ambulatory time before self-admin0.20.20.70.20.90.4-0.1
Ambulatory time after self-admin0.40.50.9-0.4-0.9-0.7-0.6
Bone: tissue strength0.80.81.9-0.5-1.4-0.9-0.7
Total heroin consumption2.32.75.32.31.31.21.6
Bone: trabecular number2.13.64.72.21.81.91.5
Bone: trabecular spacing0.81.01.4-1.2-0.7-0.9-1.1
Bone: trabecular thickness0.50.60.70.80.70.90.8
Bone: trabecular tissue density0.10.20.30.20.50.50.5
Water consumed over 24 hours0.30.40.8-0.70.4-0.4-0.9
Number of responses in last shaping day1.71.83.21.11.11.41.8