Wnt5a

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Wnt5a 0.04 0.02 1.3e-03 0.02 0.02 0.01 0.02 2.2e-03 2.7e-03 1.3e-02 6.1e-03
2 Liver gene expression Wnt5a 0.06 0.04 2.6e-05 0.03 0.03 0.03 0.04 2.3e-04 1.3e-04 2.3e-04 6.7e-05
3 Brain gene expression Wnt5a 0.12 0.07 6.6e-04 0.03 0.03 0.05 0.05 3.8e-04 3.9e-04 1.7e-05 2.8e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.50.82.1-1.50.1-0.5
Area under the delay curve0.00.00.00.0-0.1-0.1
BMI with tail0.92.95.7-2.41.4-1.0
BMI without tail1.63.45.5-2.42.1-0.2
Body weight1.45.88.5-2.92.8-0.8
Weight adjusted by age1.21.32.91.00.21.7
Bone surface0.61.02.6-1.60.2-0.6
Bone volume1.11.83.8-1.90.4-1.3
Breakpoint value in progressive ratio session0.40.40.60.8-0.7-0.3
Number of licking bursts0.10.10.2-0.40.30.0
Context. condit. distance diff. score0.10.10.30.2-0.20.5
Locomotion velocity, session 14.14.49.13.0-1.81.0
Locomotion distance, session 12.43.07.02.6-1.40.5
Locomotion velocity, session 23.33.88.62.9-0.81.5
Locomotion distance, session 20.91.33.41.8-0.40.7
Locomotion velocity, session 31.72.04.02.0-1.4-0.1
Locomotion distance, session 31.21.43.0-0.1-1.0-1.7
Stereotopy head waving bouts, day 30.10.10.20.3-0.40.5
Stereotopy head waving duration, day 30.40.40.80.5-0.60.9
Locomotion velocity, session 70.20.20.60.80.1-0.3
Locomotion distance, session 70.70.82.40.1-0.2-1.6
Stereotopy head waving bouts, day 71.92.12.8-1.31.71.3
Stereotopy head waving duration, day 71.72.12.4-1.21.51.6
Locomotion velocity, session 86.37.515.64.0-2.41.2
Locomotion distance, session 81.31.94.62.1-0.80.5
Degree of sensitization distance0.20.20.40.30.60.3
Degree of sensitization stereotypy2.12.43.5-1.21.91.4
Conditioned locomotion0.50.61.1-1.10.80.3
Cocaine response after cond. corrected0.20.30.60.8-0.40.2
Cocaine response after cond. not corrected0.20.20.40.6-0.3-0.0
Cocaine response before conditioning0.40.40.9-0.0-0.6-1.0
Saline control response1.52.03.3-1.80.8-1.5
Bone: connectivity density0.71.11.6-1.30.71.1
Bone: cortical apparent density2.12.85.91.5-2.4-0.1
Bone: cortical area6.09.119.6-4.42.0-1.9
Bone: cortical porosity1.01.13.0-0.51.70.1
Bone: cortical porosity0.70.82.0-0.61.4-0.4
Bone: cortical thickness2.54.28.9-3.01.5-1.1
Bone: cortical thickness2.32.65.1-2.31.70.0
Bone: cortical tissue density2.73.67.31.9-2.7-0.0
Condit. Reinf. active minus inactive responses1.41.53.1-0.5-1.1-1.8
Condit. Reinf. active-inactive response ratio2.42.53.6-1.6-1.1-1.9
Condit. Reinf. active responses0.20.30.40.3-0.6-0.6
Condit. Reinf. inactive responses1.51.83.11.80.51.5
Incentive salience index mean0.40.50.9-0.6-0.3-0.9
Condit. Reinf. lever presses0.10.20.2-0.50.50.1
Condit. Reinf. active minus inactive responses0.80.91.4-0.51.01.2
Condit. Reinf. active-inactive response ratio2.32.43.7-1.71.90.8
Condit. Reinf. active responses0.20.30.5-0.30.40.7
Condit. Reinf. inactive responses1.01.22.21.5-1.2-0.1
Condit. Reinf. lever presses0.60.81.3-1.0-0.3-1.1
Condit. Reinf. lever reinforcers received0.10.20.3-0.40.40.5
Conditioned reinforcement - actives0.70.81.7-0.41.30.6
Conditioned reinforcement - inactives2.52.84.3-2.00.4-2.1
Conditioned locomotion0.40.50.5-0.60.7-0.7
Patch foraging indifference point 0 sec1.42.34.00.3-1.7-2.0
Patch foraging indifference point AUC0.40.50.9-0.11.00.8
Delay disc. indifference point, 0s delay0.91.01.9-0.91.40.3
Delay disc. indifference point, 16s delay0.30.30.50.7-0.7-0.1
Delay disc. indifference point, 2s delay0.20.30.40.6-0.60.2
Delay disc. indifference point, 24s delay1.61.52.11.5-1.30.9
Delay disc. indifference point, 4s delay0.30.30.7-0.80.1-0.5
Delay disc. indifference point, 8s delay0.10.10.2-0.20.4-0.1
Indifference point function ln k1.21.73.9-0.7-0.9-2.0
Indifference point function log k1.21.73.9-0.7-0.9-2.0
Patch foraging total patch changes 0 sec1.82.95.70.1-1.7-2.4
Patch foraging total patch changes 12 sec1.21.52.21.0-1.2-1.5
Patch foraging total patch changes 18 sec0.20.30.60.3-0.8-0.4
Patch foraging total patch changes 24 sec0.10.10.20.0-0.3-0.4
Patch foraging total patch changes 6 sec0.50.71.10.0-1.1-1.0
Patch foraging time to switch 0 sec1.32.02.91.7-0.81.5
Patch foraging water rate 0 sec1.93.14.8-2.2-0.0-2.1
Patch foraging water rate 12 sec0.40.60.7-0.8-0.8-0.8
Patch foraging water rate 18 sec0.71.01.9-1.40.0-1.1
Patch foraging water rate 24 sec2.02.76.1-2.50.4-1.4
Patch foraging water rate 6 sec1.01.52.5-1.6-0.2-1.4
Seeking ratio, delayed vs. immediate footshock1.31.52.3-1.21.0-1.5
Distance traveled before self-admin1.31.42.30.0-1.5-1.4
Distance traveled after self-admin1.31.43.3-0.4-0.9-1.8
Extensor digitorum longus weight1.87.112.10.7-3.5-2.9
Bone: elastic displacement0.91.01.71.3-1.10.0
Bone: elastic work1.31.62.7-1.61.3-0.7
Bone: endosteal estimation4.910.620.0-4.53.1-1.4
Bone: endosteal perimeter2.34.810.3-3.21.8-1.0
Epididymis fat weight1.74.07.4-1.02.71.9
Delta time in closed arm before/after self-admin0.20.20.2-0.40.50.4
Delta time in open arm before/after self-admin1.21.22.4-0.3-1.0-1.6
Diff in mean of infusions in LGA sessions4.44.97.32.70.32.7
Delay discount exponential model param0.00.00.0-0.00.1-0.0
Extinction: sum of active levers before priming1.71.72.30.8-1.5-1.5
Active lever presses in extinction session 60.10.10.40.60.0-0.3
Bone: final force6.310.219.5-4.43.2-0.9
Bone: final moment6.410.418.8-4.33.4-1.0
Food consumed during 24 hour testing period3.54.26.21.0-2.3-2.5
Glucose0.10.20.70.00.80.1
Heart weight0.10.10.30.1-0.5-0.1
Delay discount hyperbolic model param0.00.00.00.00.1-0.0
Intermittent access intake day 1-15 change0.40.40.60.40.80.7
Intermittent access intake escalation0.70.71.00.60.81.0
Intermittent access intake escalation 20.20.20.30.10.50.5
Intermitt. access day 1 inactive lever presses0.30.30.5-0.1-0.7-0.7
Intermitt. access day 15 inactive lever presses0.40.40.70.9-0.50.5
Intermitt. access escalation Index0.80.71.7-1.30.5-0.4
Intermittent access day 1 total infusions1.61.85.1-0.3-0.5-2.3
Intermittent access day 15 total infusions0.60.61.50.6-0.2-1.2
Intermittent access terminal intake (last 3 days)0.80.82.0-0.00.7-1.4
Intermittent access total infusions0.70.82.0-0.20.5-1.4
Intermittent access day 1 locomotion1.71.84.70.1-0.8-2.2
Intermittent access day 15 total locomotion0.70.71.9-0.40.1-1.4
Intermittent access total locomotion0.60.61.9-0.10.2-1.4
Intermittent access standard deviation1.11.12.2-1.11.5-0.0
Left kidney weight1.13.05.3-1.02.31.7
Right kidney weight1.02.74.2-1.92.0-0.5
Cocaine induced anxiety0.80.92.3-0.61.50.2
Post-drug Anxiety0.10.10.20.10.1-0.5
Baseline Anxiety0.90.91.90.7-1.4-0.6
Tail length0.41.22.6-1.01.60.0
Length with tail0.31.02.6-0.71.6-0.1
Length without tail0.30.60.9-0.51.0-0.7
Times rat made contact with spout3.23.76.50.3-2.2-2.6
Lifetime Intake0.70.71.9-0.10.5-1.4
Liver weight, left0.30.50.8-0.90.90.0
Liver weight, right0.40.61.9-0.20.2-1.4
Locomotor activity0.61.02.0-1.40.8-0.6
Locomotor testing distance1.01.63.2-1.81.2-0.5
Locomotor testing rearing0.81.22.4-1.61.1-0.2
Locomotion in novel chamber0.30.30.40.4-0.6-0.6
Locomotion in novel chamber post-restriction0.10.10.3-0.1-0.30.5
Fecal boli incidents, locomotor time 10.60.61.5-0.6-0.1-1.2
Change in fecal boli incidents, locomotor task0.10.10.3-0.20.50.1
Time >=10cm from walls, locomotor time 10.40.41.00.0-0.6-1.0
Bouts of movement, locomotor time 11.51.73.0-1.11.7-0.9
Total resting periods, locomotor time 10.60.71.7-0.61.3-0.3
Rest time, locomotor task time 11.31.52.6-1.31.60.4
Distance moved, locomotor task time 10.10.10.2-0.20.40.1
Vertical activity count, locomotor time 10.30.30.8-0.40.1-0.9
Time >=10cm from walls, locomotor time 20.10.10.2-0.50.1-0.3
Bouts of movement, locomotor time 20.10.10.30.20.2-0.5
Total resting periods, locomotor time 20.20.20.3-0.30.6-0.5
Rest time, locomotor task time 21.92.23.1-1.81.61.0
Distance moved, locomotor task time 20.20.30.7-0.20.90.1
Vertical activity count, locomotor time 20.70.81.8-0.70.3-1.3
Light reinforcement 10.20.41.11.10.20.4
Light reinforcement 20.60.81.50.80.61.2
Bone: marrow area4.610.019.1-4.43.0-1.3
Bone: maximum diameter1.83.47.7-2.80.1-1.5
Bone: maximum force8.915.427.9-5.34.2-0.7
Bone: maximum moment8.714.925.9-5.14.3-0.8
Mean time between licks in bursts0.60.91.41.00.51.2
Mean num. licks in bursts1.21.52.40.4-1.6-1.4
Cd content in liver0.20.20.70.2-0.8-0.1
Co content in liver0.70.81.80.4-0.7-1.4
Cu content in liver1.21.42.20.9-1.1-1.5
Fe content in liver0.10.10.20.4-0.30.1
K content in liver0.50.51.01.00.10.7
Mg content in liver0.30.30.70.8-0.30.4
Mn content in liver1.31.52.41.3-0.61.6
Na content in liver0.90.91.21.00.81.1
Rb content in liver1.11.42.1-0.6-1.4-1.3
Se content in liver1.11.33.40.80.21.8
Sr content in liver0.40.30.7-0.80.60.0
Zn content in liver2.62.84.41.2-1.6-2.1
Bone: minimum diameter7.614.326.3-5.13.3-2.4
Time in familiar zone, hab. session 12.42.24.4-2.10.2-1.5
Time in novel zone, hab. session 11.01.01.41.10.61.2
Total zone transitions, hab. session 11.31.83.21.8-1.4-0.4
Total locomotion distance, hab. session 10.81.22.91.7-0.30.7
Locomotion velocity, hab. session 11.41.94.52.1-1.00.6
Time in familiar zone, hab. session 24.44.68.00.3-2.4-2.8
Time in novel zone, hab. session 22.42.43.8-0.51.81.9
Total zone transitions, hab. session 20.40.61.21.1-0.7-0.1
Total locomotion distance, hab. session 20.71.02.11.4-0.9-0.0
Locomotion velocity, hab. session 20.81.02.21.5-0.90.3
Novel to familiar place preference ratio0.50.51.0-0.71.0-0.3
Novelty place preference0.30.30.4-0.40.4-0.6
Time in novel zone, NPP test0.20.30.3-0.50.5-0.5
Total zone transitions, NPP test1.82.64.92.2-1.7-0.0
Total locomotion distance, NPP test1.72.35.02.2-1.40.4
Locomotion velocity, NPP test2.02.86.12.5-1.40.6
Intraocular pressure2.23.15.2-0.3-2.3-2.0
Delta distance traveled before/after self-admin0.00.00.1-0.10.3-0.0
Delta ambulatory time before/after self-admin0.40.41.20.2-0.2-1.1
Parametrial fat weight1.32.54.4-2.11.70.2
Pavlov. Cond. lever latency0.40.51.00.10.61.0
Pavlov. Cond. magazine entry latency0.30.40.70.0-0.8-0.6
Pavlov. Cond. change in total contacts0.20.20.40.4-0.6-0.3
Pavlov. Cond. index score0.10.10.20.2-0.5-0.4
Pavlov. Cond. latency score0.20.20.5-0.1-0.4-0.7
Pavlov. Cond. lever contacts0.40.40.60.6-0.8-0.5
Pavlov. Cond. magazine entry number0.50.71.3-0.61.10.5
Pavlov. Cond. intertrial magazine entries0.50.51.11.00.60.5
Pavlov. Cond. lever-magazine prob. diff.0.10.10.20.4-0.3-0.1
Pavlov. Cond. response bias0.60.71.11.0-1.1-0.2
Pavlov. Cond. lever latency0.60.81.6-0.11.20.8
Pavlov. Cond. magazine entry latency3.64.29.71.3-3.1-1.1
Pavlov. Cond. change in total contacts1.41.93.40.1-1.9-1.5
Pavlov. Cond. index score2.12.76.31.0-2.5-0.9
Pavlov. Cond. latency score2.73.37.60.9-2.8-1.2
Pavlov. Cond. lever contacts0.71.01.90.3-1.4-1.0
Pavlov. Cond. magazine entry number3.74.510.0-1.13.21.5
Pavlov. Cond. intertrial magazine entries5.87.616.4-2.44.10.8
Pavlov. Cond. lever-magazine prob. diff.2.32.96.81.1-2.6-0.9
Pavlov. Cond. response bias1.62.24.40.7-2.1-1.3
Time in closed arm before self-admin0.30.30.80.1-0.00.9
Time in closed arm after self-admin0.40.41.1-0.40.31.0
Time in open arm before self-admin0.40.41.10.21.00.4
Time in open arm after self-admin0.50.61.6-0.1-0.0-1.3
Bone: periosteal estimation7.415.331.8-5.63.2-1.9
Bone: periosteal perimeter3.55.812.9-3.61.5-1.4
Bone: post-yield work3.14.37.8-2.82.20.4
Progressive ratio test 1 active lever presses1.01.01.6-0.71.0-1.3
Progressive ratio test 1 breakpoint1.31.32.4-0.81.0-1.5
Progressive ratio test 1 inactive lever presses0.50.51.4-0.20.1-1.2
Progressive ratio test 2 active lever presses1.81.95.50.2-0.4-2.3
Progressive ratio test 2 breakpoint1.61.85.3-0.1-0.2-2.3
Progressive ratio test 2 inactive lever presses0.60.71.8-0.40.3-1.3
Incentive Sensitization - Responses2.82.87.4-0.1-1.0-2.7
Incentive Sensitization - Breakpoint2.62.67.0-0.1-0.9-2.7
Sum of active levers in priming session hrs 5-60.30.30.5-0.30.70.5
Progressive ratio0.50.61.3-0.41.10.5
Food seeking constrained by brief footshock1.31.63.7-0.60.91.9
Seeking ratio, punishment vs. effort0.20.20.40.2-0.70.4
Retroperitoneal fat weight1.96.19.0-3.03.00.7
Reaction time number correct0.10.20.3-0.20.6-0.4
Reaction time mean minus median1.41.92.7-0.81.61.5
Reaction time mean minus median AUC2.33.04.7-1.92.20.8
Reaction time num false alarms0.20.30.70.8-0.3-0.2
Reaction time num false alarms AUC0.20.30.60.8-0.50.0
Reaction time trials correct on left0.10.20.3-0.20.6-0.4
Reaction time trials on left0.20.20.5-0.20.7-0.3
Reaction time mean1.82.54.9-1.22.21.0
Reaction time mean AUC2.02.75.5-1.12.31.2
Median of all reaction times1.42.04.1-1.12.00.8
Reaction time omissions1.11.52.2-0.71.51.4
Reaction time false alarm rate0.20.30.40.7-0.50.3
Reaction time premature initiation rate0.60.81.0-1.00.61.0
Reaction time premature initiations0.91.31.5-1.21.21.0
Std. dev. reaction times2.13.04.6-1.42.11.6
Reaction time trials completed0.20.20.5-0.20.7-0.3
Reaction time trials AUC0.30.50.5-0.60.7-0.7
Run reversals in cocaine runway, females0.30.30.60.4-0.40.8
Run reversals in cocaine runway, males2.12.13.21.8-1.7-0.5
Latency to leave start box in cocaine runway0.50.50.90.11.00.8
Latency to leave start box in cocaine runway, F0.20.20.20.50.40.4
Latency to leave start box in cocaine runway, M0.40.40.7-0.90.60.2
Std. dev. time between licks in bursts1.72.04.00.61.32.0
Total sessions with >9 infusions0.80.91.4-0.61.2-1.0
Short access day 1 total inactive lever presses0.30.30.5-0.3-0.7-0.6
Short access day 10 total inactive lever presses1.61.72.71.6-1.60.4
Short access day 1 total infusions1.61.72.9-1.40.4-1.7
Short access day 10 total infusions0.50.60.80.90.60.7
Short access total infusions0.70.81.7-0.40.7-1.3
Short access day 1 locomotion2.32.56.2-0.7-0.8-2.5
Short access day 10 total locomotion0.30.41.0-0.31.00.1
Short access total locomotion0.10.10.10.30.3-0.3
One hour access (0.3 mA shock)0.30.30.91.0-0.1-0.3
Compulsive drug intake0.60.61.70.40.01.3
One hour access (shock baseline)0.20.30.60.20.4-0.8
Social response proportion0.10.10.3-0.0-0.50.1
Social responses0.50.71.10.8-0.51.1
Social time1.41.95.00.60.52.2
Soleus weight1.13.47.3-2.70.8-1.5
Bone: stiffness7.612.121.0-4.63.9-0.3
Tibialis anterior weight0.93.25.7-1.90.4-2.4
Time to tail flick, vehicle, before self-admin0.20.20.30.40.40.6
Time to tail flick, vehicle, after self-admin2.52.64.71.80.12.2
Time to tail flick, test, before self-admin0.20.20.30.6-0.2-0.4
Time to tail flick, test, after self-admin0.40.40.90.41.00.5
Delta time to tail flick, vehicle, before/after SA0.70.71.01.0-0.21.0
Delta time to tail flick, test, before/after SA0.30.20.3-0.40.60.4
Tibia length0.61.62.81.40.01.7
Ambulatory time before self-admin0.40.40.9-0.3-1.0-0.4
Ambulatory time after self-admin2.52.75.40.1-1.7-2.3
Bone: tissue strength0.90.91.3-1.11.20.1
Total heroin consumption0.10.10.20.40.3-0.1
Bone: trabecular number1.42.23.9-2.01.60.4
Bone: trabecular spacing0.20.30.60.40.8-0.4
Bone: trabecular thickness0.20.30.3-0.6-0.5-0.4
Bone: trabecular tissue density0.10.10.2-0.40.30.3
Water consumed over 24 hours1.21.53.50.2-1.9-1.0
Number of responses in last shaping day1.11.13.1-0.3-0.3-1.8