Vps16

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 pVTA mRNA stability Vps16 0.11 0.08 1.6e-04 0.06 0.08 0.04 0.03 9.0e-04 3.4e-04 8.9e-03 2.1e-02
2 Brain mRNA stability Vps16 0.04 0.03 8.3e-04 0.03 0.03 0.03 0.03 5.7e-04 6.8e-04 1.8e-03 9.7e-04
3 NAcc gene expression Vps16 0.02 0.02 6.3e-03 0.01 0.01 0.01 0.01 1.1e-02 9.4e-03 1.5e-02 7.6e-03
4 Liver gene expression Vps16 0.16 0.1 0.0e+00 0.12 0.13 0.12 0.12 1.1e-13 8.0e-14 1.3e-13 1.1e-13

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.40.60.91.0-0.7-0.8-0.5
Area under the delay curve0.30.40.7-0.60.80.40.4
BMI with tail1.24.04.91.9-2.2-2.0-1.9
BMI without tail3.77.68.12.8-2.6-2.8-2.8
Body weight6.226.029.05.1-5.4-4.8-5.0
Weight adjusted by age3.33.75.02.2-1.7-1.7-2.0
Bone surface0.61.01.51.2-0.9-0.9-0.9
Bone volume0.61.01.41.2-1.0-1.0-0.8
Breakpoint value in progressive ratio session3.23.64.01.8-2.0-1.9-1.9
Number of licking bursts0.20.20.5-0.60.30.70.2
Context. condit. distance diff. score0.00.10.10.3-0.4-0.00.1
Locomotion velocity, session 10.20.20.50.7-0.0-0.4-0.5
Locomotion distance, session 10.20.20.60.8-0.1-0.4-0.1
Locomotion velocity, session 20.20.20.5-0.20.70.40.4
Locomotion distance, session 21.11.52.31.5-1.0-1.4-0.9
Locomotion velocity, session 31.21.41.51.2-1.1-1.2-1.2
Locomotion distance, session 37.07.68.62.7-2.9-2.8-2.6
Stereotopy head waving bouts, day 31.11.31.9-0.91.41.01.3
Stereotopy head waving duration, day 30.70.91.3-0.81.10.81.0
Locomotion velocity, session 71.11.21.61.1-1.3-1.1-0.9
Locomotion distance, session 70.50.60.91.0-0.7-0.9-0.6
Stereotopy head waving bouts, day 70.60.70.80.7-0.8-0.8-0.9
Stereotopy head waving duration, day 70.20.30.40.4-0.6-0.4-0.6
Locomotion velocity, session 80.50.61.30.8-1.1-0.4-0.3
Locomotion distance, session 81.82.74.02.0-1.8-1.5-1.1
Degree of sensitization distance2.42.42.7-1.41.61.51.6
Degree of sensitization stereotypy2.72.93.41.6-1.7-1.7-1.9
Conditioned locomotion3.74.35.92.4-1.6-2.2-2.0
Cocaine response after cond. corrected0.10.10.2-0.30.30.40.5
Cocaine response after cond. not corrected0.20.20.3-0.40.50.50.6
Cocaine response before conditioning0.10.10.2-0.50.40.20.3
Saline control response7.29.410.43.2-2.9-3.1-3.0
Bone: connectivity density0.10.20.40.6-0.3-0.5-0.2
Bone: cortical apparent density0.60.81.30.8-0.6-1.0-1.2
Bone: cortical area3.55.25.42.3-2.3-2.3-2.2
Bone: cortical porosity0.20.20.30.1-0.5-0.2-0.6
Bone: cortical porosity0.50.60.90.5-0.9-0.6-1.0
Bone: cortical thickness1.52.52.61.6-1.5-1.6-1.6
Bone: cortical thickness0.30.40.40.6-0.6-0.6-0.6
Bone: cortical tissue density0.50.71.10.7-0.5-0.9-1.1
Condit. Reinf. active minus inactive responses1.01.11.60.8-1.2-1.0-1.0
Condit. Reinf. active-inactive response ratio1.01.11.70.9-1.3-1.1-0.9
Condit. Reinf. active responses0.60.70.80.7-0.9-0.9-0.9
Condit. Reinf. inactive responses0.00.00.10.00.30.10.0
Incentive salience index mean0.50.60.70.7-0.8-0.8-0.7
Condit. Reinf. lever presses0.10.10.10.2-0.2-0.3-0.3
Condit. Reinf. active minus inactive responses2.73.35.01.9-1.4-2.2-1.6
Condit. Reinf. active-inactive response ratio2.72.83.81.7-1.5-1.9-1.5
Condit. Reinf. active responses4.05.67.82.5-1.9-2.8-2.2
Condit. Reinf. inactive responses0.70.81.21.1-0.7-1.0-0.8
Condit. Reinf. lever presses1.62.12.51.5-1.2-1.6-1.5
Condit. Reinf. lever reinforcers received3.14.46.22.2-1.6-2.5-1.9
Conditioned reinforcement - actives0.00.00.00.10.10.0-0.1
Conditioned reinforcement - inactives0.40.40.80.8-0.3-0.9-0.4
Conditioned locomotion0.00.10.1-0.3-0.00.20.3
Patch foraging indifference point 0 sec0.10.10.30.6-0.1-0.3-0.1
Patch foraging indifference point AUC0.60.60.70.8-0.8-0.8-0.8
Delay disc. indifference point, 0s delay2.22.43.4-1.91.31.41.6
Delay disc. indifference point, 16s delay0.91.01.7-1.01.30.80.7
Delay disc. indifference point, 2s delay0.00.00.1-0.20.10.30.1
Delay disc. indifference point, 24s delay3.23.14.2-1.72.01.71.5
Delay disc. indifference point, 4s delay0.10.10.2-0.0-0.2-0.4-0.3
Delay disc. indifference point, 8s delay0.40.40.8-0.70.90.40.3
Indifference point function ln k0.00.10.10.4-0.1-0.2-0.1
Indifference point function log k0.00.10.10.4-0.1-0.2-0.1
Patch foraging total patch changes 0 sec0.10.10.40.6-0.2-0.3-0.1
Patch foraging total patch changes 12 sec0.30.40.60.8-0.6-0.5-0.6
Patch foraging total patch changes 18 sec0.70.91.2-0.80.81.11.1
Patch foraging total patch changes 24 sec1.51.82.3-1.11.21.51.5
Patch foraging total patch changes 6 sec0.60.81.11.1-1.0-1.0-0.5
Patch foraging time to switch 0 sec2.13.24.2-2.01.61.91.5
Patch foraging water rate 0 sec4.36.98.52.9-2.5-2.9-2.2
Patch foraging water rate 12 sec0.10.10.20.4-0.40.1-0.1
Patch foraging water rate 18 sec0.50.71.10.7-1.0-0.8-0.6
Patch foraging water rate 24 sec0.50.70.90.8-0.8-0.7-0.9
Patch foraging water rate 6 sec2.13.13.61.8-1.9-1.6-1.7
Seeking ratio, delayed vs. immediate footshock0.30.30.7-0.50.50.80.4
Distance traveled before self-admin5.45.77.42.5-2.7-2.2-2.1
Distance traveled after self-admin3.43.85.72.0-2.4-1.7-1.7
Extensor digitorum longus weight0.10.41.10.5-1.0-0.3-0.5
Bone: elastic displacement0.00.00.1-0.20.0-0.2-0.2
Bone: elastic work0.10.10.20.0-0.5-0.3-0.3
Bone: endosteal estimation0.51.21.81.1-1.3-0.9-0.9
Bone: endosteal perimeter2.34.85.52.3-2.3-2.1-2.0
Epididymis fat weight1.33.03.51.9-1.9-1.4-1.8
Delta time in closed arm before/after self-admin0.20.20.3-0.60.50.00.5
Delta time in open arm before/after self-admin1.11.12.71.2-1.6-0.2-0.5
Diff in mean of infusions in LGA sessions0.00.00.0-0.20.10.10.1
Delay discount exponential model param0.30.30.70.6-0.8-0.4-0.3
Extinction: sum of active levers before priming1.01.01.20.9-1.1-1.0-0.9
Active lever presses in extinction session 60.10.10.2-0.30.30.30.5
Bone: final force3.45.66.22.5-2.1-2.4-2.4
Bone: final moment2.74.44.82.2-2.0-2.1-2.1
Food consumed during 24 hour testing period0.81.01.1-1.01.01.01.1
Glucose0.60.81.40.8-1.2-1.0-0.5
Heart weight3.14.45.62.4-1.9-2.3-1.8
Delay discount hyperbolic model param0.20.20.50.5-0.7-0.3-0.3
Intermittent access intake day 1-15 change0.60.61.20.7-1.1-0.6-0.5
Intermittent access intake escalation0.20.20.30.4-0.5-0.4-0.3
Intermittent access intake escalation 20.20.20.3-0.40.00.50.5
Intermitt. access day 1 inactive lever presses0.10.20.3-0.30.4-0.30.6
Intermitt. access day 15 inactive lever presses0.10.10.30.10.0-0.50.3
Intermitt. access escalation Index0.00.00.0-0.1-0.10.1-0.0
Intermittent access day 1 total infusions0.10.10.2-0.40.20.50.3
Intermittent access day 15 total infusions0.00.00.10.1-0.3-0.10.0
Intermittent access terminal intake (last 3 days)0.00.00.00.1-0.2-0.10.2
Intermittent access total infusions0.00.00.1-0.10.00.10.3
Intermittent access day 1 locomotion0.10.10.3-0.30.60.20.4
Intermittent access day 15 total locomotion0.10.10.3-0.00.20.10.5
Intermittent access total locomotion0.10.10.2-0.20.20.40.5
Intermittent access standard deviation0.10.20.40.2-0.3-0.6-0.3
Left kidney weight1.02.83.21.8-1.8-1.7-1.4
Right kidney weight0.92.63.41.8-1.5-1.8-1.3
Cocaine induced anxiety4.75.46.9-2.42.61.62.6
Post-drug Anxiety1.41.62.4-1.31.60.61.4
Baseline Anxiety0.50.60.80.8-0.9-0.4-0.9
Tail length4.914.815.63.9-3.8-3.8-4.0
Length with tail4.717.118.64.3-4.3-3.8-4.1
Length without tail1.53.34.61.8-2.1-1.5-1.6
Times rat made contact with spout0.00.00.00.00.10.10.2
Lifetime Intake0.10.10.30.4-0.6-0.3-0.2
Liver weight, left0.00.10.3-0.1-0.1-0.00.5
Liver weight, right0.00.10.10.1-0.3-0.2-0.2
Locomotor activity0.10.20.30.4-0.0-0.5-0.6
Locomotor testing distance0.10.10.4-0.30.60.10.3
Locomotor testing rearing0.20.40.80.70.0-0.9-0.5
Locomotion in novel chamber0.10.10.2-0.40.50.10.3
Locomotion in novel chamber post-restriction1.31.62.61.2-1.0-1.6-1.2
Fecal boli incidents, locomotor time 10.10.10.20.2-0.4-0.4-0.3
Change in fecal boli incidents, locomotor task0.20.20.3-0.30.40.60.3
Time >=10cm from walls, locomotor time 10.10.10.10.2-0.3-0.2-0.3
Bouts of movement, locomotor time 12.22.42.9-1.71.51.51.4
Total resting periods, locomotor time 11.71.92.3-1.51.41.31.2
Rest time, locomotor task time 10.30.30.4-0.60.60.60.4
Distance moved, locomotor task time 10.10.10.20.2-0.4-0.5-0.0
Vertical activity count, locomotor time 10.20.20.30.4-0.5-0.5-0.2
Time >=10cm from walls, locomotor time 20.00.00.0-0.1-0.20.10.0
Bouts of movement, locomotor time 20.50.50.9-1.00.30.90.6
Total resting periods, locomotor time 20.50.50.9-1.00.30.90.5
Rest time, locomotor task time 20.30.40.6-0.70.80.60.3
Distance moved, locomotor task time 20.00.00.20.10.0-0.10.4
Vertical activity count, locomotor time 20.20.20.60.6-0.3-0.80.0
Light reinforcement 10.91.62.21.3-0.8-1.5-1.4
Light reinforcement 20.70.91.20.9-0.7-1.1-1.0
Bone: marrow area0.51.11.71.1-1.3-0.9-0.9
Bone: maximum diameter4.58.39.13.0-2.9-2.9-2.7
Bone: maximum force0.61.01.31.1-0.8-1.0-1.0
Bone: maximum moment0.20.40.50.7-0.6-0.6-0.6
Mean time between licks in bursts0.20.20.8-0.1-0.90.00.0
Mean num. licks in bursts0.10.20.40.6-0.1-0.6-0.1
Cd content in liver0.10.10.2-0.40.4-0.00.4
Co content in liver0.80.91.11.0-0.9-1.0-0.9
Cu content in liver1.92.32.91.7-1.4-1.4-1.5
Fe content in liver0.00.00.10.1-0.20.00.1
K content in liver0.20.20.30.5-0.3-0.3-0.5
Mg content in liver1.51.61.91.4-1.2-1.2-1.2
Mn content in liver1.71.92.41.5-0.9-1.5-1.5
Na content in liver0.10.10.2-0.20.40.50.3
Rb content in liver4.25.27.62.4-2.7-2.0-1.8
Se content in liver0.60.81.11.1-0.6-0.8-0.9
Sr content in liver0.70.61.10.6-0.8-1.0-0.7
Zn content in liver0.20.20.30.5-0.2-0.6-0.4
Bone: minimum diameter1.73.24.31.8-2.1-1.7-1.6
Time in familiar zone, hab. session 11.31.21.4-1.10.81.21.2
Time in novel zone, hab. session 10.40.40.50.7-0.3-0.7-0.6
Total zone transitions, hab. session 10.10.10.20.40.1-0.4-0.1
Total locomotion distance, hab. session 10.10.10.20.30.4-0.20.2
Locomotion velocity, hab. session 10.10.10.20.40.4-0.40.0
Time in familiar zone, hab. session 21.61.61.9-1.31.21.11.4
Time in novel zone, hab. session 21.61.61.91.3-1.2-1.1-1.4
Total zone transitions, hab. session 22.12.73.31.8-1.3-1.7-1.7
Total locomotion distance, hab. session 20.50.61.21.1-0.2-1.0-0.6
Locomotion velocity, hab. session 20.20.30.60.80.2-0.6-0.2
Novel to familiar place preference ratio0.10.20.3-0.30.10.50.5
Novelty place preference0.30.30.6-0.50.30.70.7
Time in novel zone, NPP test0.20.20.3-0.40.10.50.6
Total zone transitions, NPP test0.10.10.10.30.3-0.3-0.4
Total locomotion distance, NPP test0.10.20.40.60.3-0.5-0.1
Locomotion velocity, NPP test0.10.20.50.30.7-0.10.2
Intraocular pressure0.00.00.10.1-0.10.1-0.2
Delta distance traveled before/after self-admin0.20.20.30.4-0.5-0.4-0.5
Delta ambulatory time before/after self-admin0.50.50.7-0.80.70.70.6
Parametrial fat weight0.10.20.3-0.50.50.50.4
Pavlov. Cond. lever latency0.20.30.60.5-0.3-0.6-0.7
Pavlov. Cond. magazine entry latency0.10.10.10.3-0.2-0.4-0.2
Pavlov. Cond. change in total contacts0.00.00.00.2-0.2-0.2-0.1
Pavlov. Cond. index score0.00.00.0-0.0-0.10.00.1
Pavlov. Cond. latency score0.10.10.2-0.30.20.30.4
Pavlov. Cond. lever contacts0.00.00.00.2-0.2-0.2-0.0
Pavlov. Cond. magazine entry number0.60.80.9-0.70.90.90.9
Pavlov. Cond. intertrial magazine entries0.20.20.40.4-0.6-0.4-0.2
Pavlov. Cond. lever-magazine prob. diff.0.00.00.0-0.1-0.10.00.1
Pavlov. Cond. response bias0.40.50.70.7-0.8-0.8-0.6
Pavlov. Cond. lever latency4.25.76.3-2.42.12.52.5
Pavlov. Cond. magazine entry latency0.10.10.20.4-0.4-0.3-0.2
Pavlov. Cond. change in total contacts4.05.66.22.3-2.2-2.4-2.5
Pavlov. Cond. index score3.64.64.82.1-2.1-2.2-2.1
Pavlov. Cond. latency score2.83.43.91.9-1.8-2.0-1.8
Pavlov. Cond. lever contacts4.25.85.92.4-2.3-2.4-2.4
Pavlov. Cond. magazine entry number0.70.91.0-0.91.01.00.9
Pavlov. Cond. intertrial magazine entries1.31.72.1-1.21.51.31.2
Pavlov. Cond. lever-magazine prob. diff.3.24.14.12.0-2.0-2.0-2.0
Pavlov. Cond. response bias4.66.36.42.5-2.5-2.5-2.5
Time in closed arm before self-admin0.20.20.4-0.50.20.60.5
Time in closed arm after self-admin0.50.50.9-1.00.50.60.7
Time in open arm before self-admin0.50.51.7-0.51.3-0.10.3
Time in open arm after self-admin0.10.10.30.6-0.3-0.0-0.1
Bone: periosteal estimation2.55.15.92.3-2.4-2.2-2.1
Bone: periosteal perimeter3.86.28.22.5-2.9-2.4-2.1
Bone: post-yield work0.60.80.9-0.90.90.90.9
Progressive ratio test 1 active lever presses2.32.42.81.6-1.7-1.3-1.6
Progressive ratio test 1 breakpoint3.13.23.81.8-2.0-1.6-1.8
Progressive ratio test 1 inactive lever presses0.30.40.70.6-0.5-0.8-0.3
Progressive ratio test 2 active lever presses0.20.20.40.5-0.6-0.2-0.2
Progressive ratio test 2 breakpoint0.10.10.30.4-0.5-0.1-0.2
Progressive ratio test 2 inactive lever presses0.20.30.80.5-0.2-0.9-0.1
Incentive Sensitization - Responses0.20.20.70.4-0.8-0.1-0.2
Incentive Sensitization - Breakpoint0.10.10.40.2-0.70.2-0.0
Sum of active levers in priming session hrs 5-61.11.11.41.2-0.8-1.2-1.0
Progressive ratio2.93.34.3-1.92.11.71.6
Food seeking constrained by brief footshock0.40.51.20.8-0.4-1.1-0.2
Seeking ratio, punishment vs. effort3.13.84.42.1-2.1-2.1-1.5
Retroperitoneal fat weight0.00.10.3-0.20.10.50.3
Reaction time number correct0.30.40.70.8-0.4-0.7-0.5
Reaction time mean minus median0.81.11.4-1.01.21.11.0
Reaction time mean minus median AUC0.50.70.9-0.71.00.80.8
Reaction time num false alarms1.82.53.11.8-1.4-1.6-1.4
Reaction time num false alarms AUC1.92.63.11.8-1.5-1.6-1.6
Reaction time trials correct on left0.30.40.70.8-0.4-0.7-0.5
Reaction time trials on left0.30.50.80.9-0.4-0.8-0.6
Reaction time mean0.00.00.1-0.2-0.00.3-0.0
Reaction time mean AUC0.00.00.1-0.20.00.30.1
Median of all reaction times0.00.10.10.1-0.40.2-0.3
Reaction time omissions0.40.61.00.8-0.4-1.0-0.6
Reaction time false alarm rate0.91.21.41.2-1.1-1.1-1.1
Reaction time premature initiation rate0.20.30.4-0.50.60.60.3
Reaction time premature initiations0.10.10.3-0.20.60.40.1
Std. dev. reaction times0.10.10.30.2-0.1-0.2-0.5
Reaction time trials completed0.30.50.80.9-0.4-0.8-0.6
Reaction time trials AUC0.40.50.80.9-0.5-0.8-0.6
Run reversals in cocaine runway, females0.00.00.10.10.1-0.20.2
Run reversals in cocaine runway, males1.31.21.91.1-1.1-1.4-0.8
Latency to leave start box in cocaine runway0.70.70.8-0.90.90.80.8
Latency to leave start box in cocaine runway, F1.31.41.7-1.31.21.01.2
Latency to leave start box in cocaine runway, M0.00.00.10.3-0.1-0.1-0.2
Std. dev. time between licks in bursts0.60.71.30.8-1.1-0.6-0.6
Total sessions with >9 infusions0.50.61.10.6-1.1-0.5-0.7
Short access day 1 total inactive lever presses0.70.81.1-0.91.10.70.8
Short access day 10 total inactive lever presses3.13.45.2-1.81.81.32.3
Short access day 1 total infusions0.10.10.30.1-0.5-0.1-0.0
Short access day 10 total infusions0.00.00.1-0.0-0.2-0.2-0.0
Short access total infusions0.40.41.10.5-1.0-0.3-0.5
Short access day 1 locomotion0.80.81.5-0.80.31.01.2
Short access day 10 total locomotion0.00.00.10.1-0.30.0-0.2
Short access total locomotion0.00.00.10.1-0.3-0.20.0
One hour access (0.3 mA shock)0.10.10.2-0.10.10.40.3
Compulsive drug intake4.64.75.7-2.12.42.21.9
One hour access (shock baseline)0.50.51.00.7-1.0-0.6-0.4
Social response proportion1.61.72.41.6-1.0-1.4-1.2
Social responses4.76.17.02.6-2.0-2.6-2.5
Social time0.40.50.70.8-0.5-0.7-0.8
Soleus weight0.00.10.20.3-0.4-0.0-0.0
Bone: stiffness1.62.63.11.8-1.4-1.6-1.6
Tibialis anterior weight0.93.03.41.7-1.9-1.7-1.6
Time to tail flick, vehicle, before self-admin2.22.33.6-1.31.21.91.6
Time to tail flick, vehicle, after self-admin0.00.00.0-0.1-0.10.1-0.0
Time to tail flick, test, before self-admin0.90.91.40.9-0.6-1.0-1.2
Time to tail flick, test, after self-admin2.02.12.7-1.41.41.41.6
Delta time to tail flick, vehicle, before/after SA4.04.06.51.9-1.5-2.5-1.9
Delta time to tail flick, test, before/after SA2.52.33.2-1.41.31.51.8
Tibia length5.014.118.13.6-4.3-3.5-3.7
Ambulatory time before self-admin4.34.55.52.2-2.4-1.9-2.0
Ambulatory time after self-admin4.24.67.02.2-2.6-1.8-1.9
Bone: tissue strength0.10.10.20.4-0.0-0.3-0.4
Total heroin consumption3.64.34.92.1-1.8-2.2-2.1
Bone: trabecular number0.60.91.31.1-0.8-1.0-0.9
Bone: trabecular spacing0.10.20.4-0.40.60.20.2
Bone: trabecular thickness0.50.61.00.7-1.0-0.6-0.5
Bone: trabecular tissue density1.21.72.21.5-1.0-1.4-1.3
Water consumed over 24 hours0.10.10.1-0.30.40.40.2
Number of responses in last shaping day0.10.10.2-0.40.2-0.00.4