Vom2r36

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose alternative TSS NM_001099483.1 0.12 0.08 7.3e-04 0.01 0.01 0.01 0 1.8e-02 1.2e-02 1.8e-02 7.3e-02
2 Adipose alternative TSS XM_039088257.1 0.12 0.08 8.2e-04 0.01 0.01 0.01 0 2.6e-02 1.6e-02 6.5e-02 1.2e-01
3 Adipose gene expression Vom2r36 0.41 0.15 0.0e+00 0.15 0.15 0.15 0.15 4.3e-16 1.0e-16 2.0e-16 1.1e-16

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.10.20.30.6-0.5-0.1
Area under the delay curve2.32.52.81.7-1.7-1.3
BMI with tail0.61.83.51.0-1.0-1.9
BMI without tail1.42.93.81.9-2.0-1.2
Body weight0.20.90.9-1.00.90.9
Weight adjusted by age0.30.40.60.5-0.50.8
Bone surface1.62.75.3-1.21.22.3
Bone volume1.42.44.1-1.21.22.0
Breakpoint value in progressive ratio session1.41.51.71.2-1.3-1.3
Number of licking bursts0.40.40.5-0.70.70.5
Context. condit. distance diff. score0.91.11.41.2-1.2-0.8
Locomotion velocity, session 10.20.20.30.5-0.50.4
Locomotion distance, session 10.81.03.1-0.0-0.01.8
Locomotion velocity, session 20.00.00.00.2-0.20.2
Locomotion distance, session 21.42.03.8-1.11.11.9
Locomotion velocity, session 30.10.10.1-0.30.40.1
Locomotion distance, session 30.50.60.91.0-0.9-0.2
Stereotopy head waving bouts, day 30.10.20.3-0.50.50.1
Stereotopy head waving duration, day 30.40.50.7-0.80.80.4
Locomotion velocity, session 70.20.30.5-0.40.40.7
Locomotion distance, session 70.10.10.10.3-0.30.1
Stereotopy head waving bouts, day 70.60.60.8-0.90.90.6
Stereotopy head waving duration, day 70.50.70.7-0.90.90.7
Locomotion velocity, session 80.10.10.20.5-0.50.2
Locomotion distance, session 80.20.20.30.6-0.60.2
Degree of sensitization distance0.10.10.1-0.40.30.3
Degree of sensitization stereotypy0.00.00.0-0.20.2-0.1
Conditioned locomotion0.30.30.50.7-0.7-0.1
Cocaine response after cond. corrected2.42.74.1-2.02.0-0.1
Cocaine response after cond. not corrected2.62.83.8-1.91.91.0
Cocaine response before conditioning1.21.43.80.4-0.41.9
Saline control response0.40.50.70.8-0.80.2
Bone: connectivity density0.40.60.70.8-0.8-0.6
Bone: cortical apparent density0.81.11.6-1.31.20.5
Bone: cortical area0.20.30.40.4-0.40.7
Bone: cortical porosity0.20.20.5-0.20.2-0.7
Bone: cortical porosity0.20.20.2-0.40.5-0.4
Bone: cortical thickness0.61.01.11.0-1.1-0.9
Bone: cortical thickness0.10.10.2-0.00.00.5
Bone: cortical tissue density1.01.31.8-1.31.30.6
Condit. Reinf. active minus inactive responses0.40.50.7-0.90.80.3
Condit. Reinf. active-inactive response ratio0.40.40.90.3-0.3-1.0
Condit. Reinf. active responses1.31.61.9-1.41.41.0
Condit. Reinf. inactive responses2.02.43.7-1.31.31.9
Incentive salience index mean0.40.50.6-0.70.70.8
Condit. Reinf. lever presses0.20.30.8-0.10.10.9
Condit. Reinf. active minus inactive responses1.51.84.6-0.70.72.2
Condit. Reinf. active-inactive response ratio2.93.15.6-1.41.32.4
Condit. Reinf. active responses0.81.13.10.2-0.21.8
Condit. Reinf. inactive responses1.11.31.91.4-1.4-0.3
Condit. Reinf. lever presses0.30.40.60.8-0.8-0.2
Condit. Reinf. lever reinforcers received0.91.23.70.1-0.11.9
Conditioned reinforcement - actives3.43.44.6-2.12.11.1
Conditioned reinforcement - inactives2.83.26.9-1.21.12.6
Conditioned locomotion4.04.86.1-2.52.41.5
Patch foraging indifference point 0 sec2.54.15.32.3-2.3-1.3
Patch foraging indifference point AUC0.20.30.70.2-0.2-0.9
Delay disc. indifference point, 0s delay6.06.69.23.0-3.0-1.2
Delay disc. indifference point, 16s delay1.51.52.2-1.51.5-0.2
Delay disc. indifference point, 2s delay1.11.21.51.2-1.2-0.8
Delay disc. indifference point, 24s delay0.50.50.7-0.80.8-0.3
Delay disc. indifference point, 4s delay0.00.00.00.2-0.20.0
Delay disc. indifference point, 8s delay2.12.22.91.6-1.7-1.0
Indifference point function ln k1.72.47.3-0.10.12.7
Indifference point function log k1.72.47.3-0.10.12.7
Patch foraging total patch changes 0 sec2.43.95.22.2-2.3-1.3
Patch foraging total patch changes 12 sec0.50.71.50.6-0.6-1.2
Patch foraging total patch changes 18 sec1.41.82.11.3-1.3-1.4
Patch foraging total patch changes 24 sec0.60.71.1-1.01.0-0.2
Patch foraging total patch changes 6 sec0.30.41.10.3-0.3-1.1
Patch foraging time to switch 0 sec3.45.37.5-2.72.7-1.1
Patch foraging water rate 0 sec1.01.62.31.5-1.50.4
Patch foraging water rate 12 sec2.03.04.22.0-2.01.0
Patch foraging water rate 18 sec0.70.91.21.0-1.10.7
Patch foraging water rate 24 sec0.40.50.60.7-0.70.7
Patch foraging water rate 6 sec3.04.49.2-1.41.43.0
Seeking ratio, delayed vs. immediate footshock6.57.510.53.2-3.2-1.3
Distance traveled before self-admin3.23.45.02.2-2.20.5
Distance traveled after self-admin10.011.216.04.0-4.0-1.3
Extensor digitorum longus weight0.00.10.2-0.00.00.5
Bone: elastic displacement1.11.31.61.2-1.3-0.9
Bone: elastic work1.21.62.41.5-1.5-0.1
Bone: endosteal estimation1.22.75.4-1.11.22.3
Bone: endosteal perimeter0.71.53.7-0.60.61.9
Epididymis fat weight0.30.71.1-1.01.0-0.4
Delta time in closed arm before/after self-admin0.20.20.30.4-0.4-0.5
Delta time in open arm before/after self-admin0.30.30.90.2-0.30.9
Diff in mean of infusions in LGA sessions3.74.05.92.4-2.4-0.7
Delay discount exponential model param2.02.12.5-1.51.61.2
Extinction: sum of active levers before priming4.44.46.12.5-2.5-1.0
Active lever presses in extinction session 62.52.53.7-1.91.90.3
Bone: final force0.81.32.7-0.80.81.6
Bone: final moment0.81.23.0-0.60.61.7
Food consumed during 24 hour testing period0.60.71.7-0.40.41.3
Glucose1.32.02.31.5-1.5-1.2
Heart weight0.60.81.70.6-0.71.3
Delay discount hyperbolic model param1.81.92.4-1.51.51.1
Intermittent access intake day 1-15 change1.21.22.5-0.70.71.6
Intermittent access intake escalation2.12.02.8-1.31.31.7
Intermittent access intake escalation 20.70.71.6-0.60.51.3
Intermitt. access day 1 inactive lever presses11.612.514.9-3.93.82.9
Intermitt. access day 15 inactive lever presses11.412.514.9-3.93.82.8
Intermitt. access escalation Index0.90.81.00.8-0.8-1.0
Intermittent access day 1 total infusions0.60.70.8-0.90.90.8
Intermittent access day 15 total infusions3.74.24.4-2.12.02.0
Intermittent access terminal intake (last 3 days)3.53.84.2-2.02.01.8
Intermittent access total infusions3.33.74.1-2.02.01.8
Intermittent access day 1 locomotion0.91.01.3-0.90.91.1
Intermittent access day 15 total locomotion0.90.91.9-0.70.61.4
Intermittent access total locomotion2.52.83.4-1.61.61.8
Intermittent access standard deviation3.84.05.7-2.42.31.0
Left kidney weight1.54.39.6-1.31.33.1
Right kidney weight1.54.38.2-1.61.52.9
Cocaine induced anxiety0.50.61.80.1-0.21.3
Post-drug Anxiety2.62.83.8-1.91.91.0
Baseline Anxiety3.03.14.8-2.12.2-0.2
Tail length0.51.41.51.1-1.21.1
Length with tail1.34.68.1-1.71.72.9
Length without tail2.35.15.8-2.42.41.9
Times rat made contact with spout0.70.80.91.0-0.9-0.8
Lifetime Intake1.41.61.8-1.31.31.2
Liver weight, left2.33.75.4-2.32.30.6
Liver weight, right0.61.01.4-1.21.20.2
Locomotor activity0.40.70.80.8-0.8-0.9
Locomotor testing distance0.10.20.20.4-0.3-0.5
Locomotor testing rearing0.00.00.00.2-0.20.2
Locomotion in novel chamber2.02.43.11.4-1.4-1.8
Locomotion in novel chamber post-restriction1.72.02.21.5-1.5-1.3
Fecal boli incidents, locomotor time 10.30.30.40.6-0.70.2
Change in fecal boli incidents, locomotor task4.03.84.71.8-1.8-2.2
Time >=10cm from walls, locomotor time 10.10.10.2-0.40.4-0.2
Bouts of movement, locomotor time 14.04.46.52.5-2.6-0.4
Total resting periods, locomotor time 12.32.53.61.9-1.9-0.6
Rest time, locomotor task time 10.91.01.6-0.80.81.3
Distance moved, locomotor task time 10.40.50.70.6-0.6-0.9
Vertical activity count, locomotor time 16.77.08.52.9-2.9-2.0
Time >=10cm from walls, locomotor time 20.30.40.6-0.40.5-0.8
Bouts of movement, locomotor time 20.10.10.10.3-0.3-0.3
Total resting periods, locomotor time 20.40.40.60.8-0.7-0.4
Rest time, locomotor task time 22.12.43.41.8-1.8-0.8
Distance moved, locomotor task time 20.00.00.00.0-0.0-0.2
Vertical activity count, locomotor time 21.82.02.61.6-1.6-0.9
Light reinforcement 11.32.33.31.8-1.8-0.6
Light reinforcement 20.20.30.80.3-0.3-0.9
Bone: marrow area1.22.65.4-1.11.12.3
Bone: maximum diameter0.20.41.30.0-0.01.1
Bone: maximum force0.71.22.8-0.60.61.7
Bone: maximum moment0.71.13.1-0.40.41.8
Mean time between licks in bursts1.72.42.61.6-1.6-1.5
Mean num. licks in bursts1.01.21.41.2-1.1-0.9
Cd content in liver0.80.91.41.2-1.20.2
Co content in liver0.70.81.0-0.80.81.0
Cu content in liver1.62.02.3-1.51.51.2
Fe content in liver0.40.50.5-0.70.70.6
K content in liver0.00.00.00.1-0.10.1
Mg content in liver0.10.10.1-0.10.1-0.4
Mn content in liver0.10.10.40.1-0.1-0.6
Na content in liver0.70.81.90.5-0.5-1.4
Rb content in liver0.20.20.3-0.50.50.3
Se content in liver1.11.42.90.8-0.8-1.7
Sr content in liver14.513.314.83.8-3.8-3.2
Zn content in liver1.31.42.1-1.41.40.2
Bone: minimum diameter0.71.33.8-0.10.22.0
Time in familiar zone, hab. session 11.61.51.91.4-1.40.9
Time in novel zone, hab. session 12.32.23.3-1.81.8-0.3
Total zone transitions, hab. session 10.20.30.90.3-0.20.9
Total locomotion distance, hab. session 11.01.42.21.5-1.5-0.0
Locomotion velocity, hab. session 10.60.81.21.1-1.10.0
Time in familiar zone, hab. session 22.62.63.0-1.61.61.7
Time in novel zone, hab. session 20.40.41.10.3-0.3-1.1
Total zone transitions, hab. session 20.50.71.30.6-0.61.1
Total locomotion distance, hab. session 21.92.53.61.9-1.9-0.5
Locomotion velocity, hab. session 22.53.34.82.2-2.2-0.7
Novel to familiar place preference ratio1.01.11.41.2-1.2-0.6
Novelty place preference0.50.50.70.8-0.8-0.2
Time in novel zone, NPP test0.30.30.40.6-0.6-0.1
Total zone transitions, NPP test0.20.30.50.7-0.70.1
Total locomotion distance, NPP test0.91.21.71.3-1.3-0.3
Locomotion velocity, NPP test1.11.62.31.5-1.5-0.3
Intraocular pressure0.30.50.6-0.80.80.5
Delta distance traveled before/after self-admin2.83.03.41.8-1.8-1.5
Delta ambulatory time before/after self-admin2.73.03.41.8-1.8-1.4
Parametrial fat weight2.44.79.91.5-1.5-3.1
Pavlov. Cond. lever latency0.10.10.1-0.40.40.2
Pavlov. Cond. magazine entry latency0.60.81.40.8-0.7-1.2
Pavlov. Cond. change in total contacts0.40.40.50.7-0.7-0.5
Pavlov. Cond. index score0.60.70.70.9-0.8-0.8
Pavlov. Cond. latency score0.60.70.80.9-0.9-0.8
Pavlov. Cond. lever contacts0.00.00.0-0.00.0-0.1
Pavlov. Cond. magazine entry number0.81.01.1-1.01.01.0
Pavlov. Cond. intertrial magazine entries0.20.20.30.6-0.60.3
Pavlov. Cond. lever-magazine prob. diff.0.50.60.60.7-0.7-0.8
Pavlov. Cond. response bias0.10.10.20.0-0.0-0.4
Pavlov. Cond. lever latency5.37.28.5-2.92.92.2
Pavlov. Cond. magazine entry latency2.22.63.01.5-1.5-1.7
Pavlov. Cond. change in total contacts2.02.84.02.0-2.0-0.6
Pavlov. Cond. index score2.63.33.92.0-2.0-1.5
Pavlov. Cond. latency score3.13.84.32.1-2.1-1.7
Pavlov. Cond. lever contacts2.63.64.42.1-2.1-1.4
Pavlov. Cond. magazine entry number1.31.51.6-1.21.21.3
Pavlov. Cond. intertrial magazine entries3.34.36.6-1.81.82.6
Pavlov. Cond. lever-magazine prob. diff.2.32.93.51.9-1.9-1.3
Pavlov. Cond. response bias1.31.82.51.6-1.5-0.8
Time in closed arm before self-admin2.02.32.5-1.61.51.4
Time in closed arm after self-admin1.01.01.4-1.21.20.5
Time in open arm before self-admin2.62.83.01.7-1.7-1.6
Time in open arm after self-admin1.51.62.21.5-1.4-0.8
Bone: periosteal estimation0.61.33.4-0.40.51.9
Bone: periosteal perimeter0.60.92.5-0.30.41.6
Bone: post-yield work2.23.03.1-1.71.81.7
Progressive ratio test 1 active lever presses0.30.30.50.4-0.40.7
Progressive ratio test 1 breakpoint0.20.30.50.4-0.40.7
Progressive ratio test 1 inactive lever presses3.33.65.5-1.61.62.4
Progressive ratio test 2 active lever presses1.71.82.4-1.31.21.5
Progressive ratio test 2 breakpoint2.42.73.2-1.61.51.8
Progressive ratio test 2 inactive lever presses3.33.95.8-1.71.72.4
Incentive Sensitization - Responses8.58.69.0-3.02.92.9
Incentive Sensitization - Breakpoint7.88.08.8-3.02.92.6
Sum of active levers in priming session hrs 5-61.61.62.41.5-1.6-0.3
Progressive ratio3.64.15.32.3-2.3-1.4
Food seeking constrained by brief footshock30.237.152.47.2-7.2-2.6
Seeking ratio, punishment vs. effort2.32.94.32.1-2.1-0.2
Retroperitoneal fat weight2.78.917.32.2-2.2-4.2
Reaction time number correct2.73.95.02.2-2.2-1.4
Reaction time mean minus median0.50.70.9-1.01.00.4
Reaction time mean minus median AUC0.50.71.0-1.01.00.2
Reaction time num false alarms0.10.20.30.5-0.5-0.1
Reaction time num false alarms AUC1.31.82.51.6-1.6-0.8
Reaction time trials correct on left2.73.95.02.2-2.2-1.4
Reaction time trials on left2.63.84.82.2-2.2-1.3
Reaction time mean4.56.37.9-2.82.81.8
Reaction time mean AUC3.95.26.9-2.62.61.4
Median of all reaction times3.54.85.9-2.42.41.6
Reaction time omissions0.10.10.10.3-0.3-0.2
Reaction time false alarm rate0.00.00.10.2-0.30.0
Reaction time premature initiation rate0.00.00.0-0.20.10.0
Reaction time premature initiations0.60.91.01.0-1.0-0.8
Std. dev. reaction times2.23.03.8-2.01.91.2
Reaction time trials completed2.63.84.82.2-2.2-1.3
Reaction time trials AUC2.43.54.42.1-2.1-1.3
Run reversals in cocaine runway, females1.31.21.6-1.31.20.8
Run reversals in cocaine runway, males0.50.50.6-0.80.80.4
Latency to leave start box in cocaine runway0.50.50.9-0.60.51.0
Latency to leave start box in cocaine runway, F0.10.10.10.1-0.20.4
Latency to leave start box in cocaine runway, M1.61.61.6-1.31.31.2
Std. dev. time between licks in bursts0.50.60.90.9-1.00.1
Total sessions with >9 infusions3.33.73.8-1.91.91.9
Short access day 1 total inactive lever presses5.46.07.8-2.82.81.6
Short access day 10 total inactive lever presses4.04.45.5-2.32.31.5
Short access day 1 total infusions0.00.00.00.1-0.10.1
Short access day 10 total infusions0.80.91.3-1.21.20.4
Short access total infusions0.50.50.60.7-0.7-0.7
Short access day 1 locomotion1.82.02.3-1.51.51.2
Short access day 10 total locomotion0.70.71.8-0.50.51.3
Short access total locomotion0.70.71.11.0-1.1-0.1
One hour access (0.3 mA shock)7.08.18.3-2.92.82.9
Compulsive drug intake1.21.21.9-0.90.91.4
One hour access (shock baseline)7.48.611.2-3.33.31.9
Social response proportion4.14.45.2-2.32.21.7
Social responses5.47.07.0-2.62.62.6
Social time1.11.52.70.9-0.91.6
Soleus weight0.20.50.80.9-0.9-0.2
Bone: stiffness2.03.24.3-1.61.62.1
Tibialis anterior weight1.86.26.82.4-2.4-2.6
Time to tail flick, vehicle, before self-admin0.10.10.4-0.10.10.6
Time to tail flick, vehicle, after self-admin5.15.56.6-2.62.51.9
Time to tail flick, test, before self-admin9.69.313.93.7-3.7-0.5
Time to tail flick, test, after self-admin0.10.10.1-0.30.30.1
Delta time to tail flick, vehicle, before/after SA2.42.33.3-1.81.80.8
Delta time to tail flick, test, before/after SA6.25.68.2-2.92.90.7
Tibia length1.23.27.6-1.01.02.8
Ambulatory time before self-admin1.92.02.91.7-1.70.4
Ambulatory time after self-admin7.88.612.73.6-3.6-0.6
Bone: tissue strength3.33.24.72.1-2.2-0.6
Total heroin consumption1.82.12.21.5-1.5-1.4
Bone: trabecular number1.11.72.21.5-1.4-0.9
Bone: trabecular spacing0.10.20.20.4-0.4-0.5
Bone: trabecular thickness0.20.20.3-0.60.60.2
Bone: trabecular tissue density2.02.84.1-2.02.0-0.3
Water consumed over 24 hours0.30.40.90.3-0.30.9
Number of responses in last shaping day3.53.64.6-2.22.11.3