Vom2r36

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose alternative TSS XM_063271848.1 0.12 0.08 7.1e-04 0.01 0.01 0.01 0.01 1.1e-02 6.8e-03 2.3e-02 6.6e-02
2 Adipose alternative TSS NM_001099483.1 0.12 0.08 7.8e-04 0.01 0.02 0.01 0.01 8.7e-03 6.3e-03 2.1e-02 5.1e-02
3 Adipose gene expression Vom2r36 0.39 0.15 0.0e+00 0.16 0.16 0.16 0.16 7.9e-17 5.8e-17 5.6e-17 2.9e-17

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.10.10.2-0.40.40.1
Area under the delay curve1.21.41.8-1.31.3-0.8
BMI with tail0.51.62.5-1.01.1-1.6
BMI without tail0.00.00.00.1-0.1-0.1
Body weight0.73.04.41.5-1.62.1
Weight adjusted by age0.30.50.6-0.70.60.8
Bone surface1.73.15.11.4-1.52.3
Bone volume1.62.94.41.4-1.52.1
Breakpoint value in progressive ratio session0.10.10.4-0.10.1-0.6
Number of licking bursts0.10.20.20.5-0.50.1
Context. condit. distance diff. score0.50.60.9-1.00.9-0.3
Locomotion velocity, session 10.40.40.4-0.70.60.7
Locomotion distance, session 11.01.33.8-0.1-0.12.0
Locomotion velocity, session 20.10.20.2-0.50.50.1
Locomotion distance, session 21.11.52.90.9-1.01.7
Locomotion velocity, session 30.00.10.10.3-0.30.0
Locomotion distance, session 30.40.40.7-0.80.80.2
Stereotopy head waving bouts, day 30.10.20.30.5-0.50.0
Stereotopy head waving duration, day 30.20.30.40.6-0.60.1
Locomotion velocity, session 70.20.20.40.4-0.40.6
Locomotion distance, session 70.00.00.1-0.20.10.3
Stereotopy head waving bouts, day 70.60.60.80.9-0.90.5
Stereotopy head waving duration, day 70.30.40.50.7-0.70.5
Locomotion velocity, session 80.10.20.2-0.50.40.3
Locomotion distance, session 80.20.30.4-0.60.50.4
Degree of sensitization distance0.10.10.10.3-0.30.2
Degree of sensitization stereotypy0.00.00.00.2-0.1-0.0
Conditioned locomotion0.30.30.5-0.70.70.0
Cocaine response after cond. corrected1.82.23.21.8-1.6-0.8
Cocaine response after cond. not corrected2.02.33.51.9-1.80.5
Cocaine response before conditioning1.72.06.1-0.1-0.12.5
Saline control response0.20.30.4-0.60.60.5
Bone: connectivity density0.30.50.6-0.80.8-0.6
Bone: cortical apparent density0.10.20.20.5-0.50.2
Bone: cortical area0.30.50.7-0.70.60.8
Bone: cortical porosity0.10.10.4-0.10.1-0.6
Bone: cortical porosity0.20.20.30.5-0.5-0.3
Bone: cortical thickness0.71.21.7-1.31.3-0.7
Bone: cortical thickness0.10.10.20.1-0.20.4
Bone: cortical tissue density0.20.20.30.6-0.60.2
Condit. Reinf. active minus inactive responses0.40.40.70.8-0.80.1
Condit. Reinf. active-inactive response ratio0.50.51.0-0.40.5-1.0
Condit. Reinf. active responses1.31.52.01.4-1.40.8
Condit. Reinf. inactive responses2.22.73.71.5-1.51.9
Incentive salience index mean0.40.50.60.7-0.80.7
Condit. Reinf. lever presses0.30.51.10.4-0.41.1
Condit. Reinf. active minus inactive responses1.31.74.10.6-0.82.0
Condit. Reinf. active-inactive response ratio2.32.74.71.3-1.42.2
Condit. Reinf. active responses0.81.23.5-0.1-0.11.9
Condit. Reinf. inactive responses0.81.01.6-1.31.2-0.0
Condit. Reinf. lever presses0.40.50.9-0.90.9-0.0
Condit. Reinf. lever reinforcers received1.11.54.40.1-0.22.1
Conditioned reinforcement - actives1.52.53.71.9-1.90.6
Conditioned reinforcement - inactives1.52.23.61.2-1.31.9
Conditioned locomotion0.81.01.51.2-1.20.3
Patch foraging indifference point 0 sec2.03.75.3-2.32.3-0.8
Patch foraging indifference point AUC0.30.41.10.00.0-1.1
Delay disc. indifference point, 0s delay4.04.46.8-2.62.5-0.2
Delay disc. indifference point, 16s delay1.11.21.61.3-1.1-0.8
Delay disc. indifference point, 2s delay0.80.91.2-1.11.1-0.5
Delay disc. indifference point, 24s delay0.30.40.50.7-0.6-0.6
Delay disc. indifference point, 4s delay0.00.00.1-0.10.10.3
Delay disc. indifference point, 8s delay1.72.02.8-1.71.6-0.8
Indifference point function ln k2.03.49.60.5-0.73.1
Indifference point function log k2.03.49.60.5-0.73.1
Patch foraging total patch changes 0 sec1.93.65.2-2.32.2-0.8
Patch foraging total patch changes 12 sec0.30.40.9-0.40.5-1.0
Patch foraging total patch changes 18 sec1.11.61.9-1.41.4-1.1
Patch foraging total patch changes 24 sec0.40.81.21.1-1.0-0.2
Patch foraging total patch changes 6 sec0.71.11.9-0.70.8-1.4
Patch foraging time to switch 0 sec2.34.86.22.5-2.2-1.8
Patch foraging water rate 0 sec0.81.72.5-1.61.40.8
Patch foraging water rate 12 sec1.22.52.9-1.71.51.6
Patch foraging water rate 18 sec0.71.01.3-1.11.00.9
Patch foraging water rate 24 sec0.40.51.1-0.50.41.1
Patch foraging water rate 6 sec3.95.610.71.7-1.83.3
Seeking ratio, delayed vs. immediate footshock5.06.19.6-3.13.0-0.3
Distance traveled before self-admin3.54.66.5-2.52.31.4
Distance traveled after self-admin9.111.217.0-4.14.0-0.9
Extensor digitorum longus weight0.00.20.40.1-0.20.7
Bone: elastic displacement1.31.51.9-1.41.4-0.9
Bone: elastic work1.01.32.1-1.51.40.2
Bone: endosteal estimation1.63.65.91.5-1.62.4
Bone: endosteal perimeter0.61.32.90.6-0.71.7
Epididymis fat weight0.51.62.51.6-1.5-0.1
Delta time in closed arm before/after self-admin0.20.20.2-0.50.5-0.4
Delta time in open arm before/after self-admin0.90.91.60.7-0.81.3
Diff in mean of infusions in LGA sessions1.01.22.0-1.41.30.1
Delay discount exponential model param1.01.11.51.2-1.20.7
Extinction: sum of active levers before priming0.20.20.3-0.60.6-0.1
Active lever presses in extinction session 63.03.04.72.2-2.0-0.2
Bone: final force0.81.33.40.4-0.61.8
Bone: final moment0.91.54.20.3-0.42.1
Food consumed during 24 hour testing period0.40.51.30.2-0.31.2
Glucose2.13.33.8-1.92.0-1.5
Heart weight0.71.11.31.0-1.01.1
Delay discount hyperbolic model param1.41.62.11.4-1.40.8
Intermittent access intake day 1-15 change1.02.02.41.5-1.51.2
Intermittent access intake escalation1.83.74.42.1-2.11.5
Intermittent access intake escalation 20.10.10.3-0.30.30.5
Intermitt. access day 1 inactive lever presses1.66.17.82.8-2.81.6
Intermitt. access day 15 inactive lever presses2.96.07.52.7-2.71.8
Intermitt. access escalation Index0.20.30.6-0.30.4-0.7
Intermittent access day 1 total infusions0.81.31.81.3-1.30.6
Intermittent access day 15 total infusions3.45.06.82.6-2.61.2
Intermittent access terminal intake (last 3 days)2.53.34.42.1-2.11.1
Intermittent access total infusions3.64.25.52.3-2.31.3
Intermittent access day 1 locomotion2.02.53.11.7-1.71.2
Intermittent access day 15 total locomotion0.30.61.60.2-0.41.3
Intermittent access total locomotion3.64.34.52.1-2.12.0
Intermittent access standard deviation0.10.20.2-0.40.4-0.5
Left kidney weight2.913.323.52.7-3.04.9
Right kidney weight3.415.322.23.3-3.54.7
Cocaine induced anxiety1.11.61.71.2-1.21.3
Post-drug Anxiety2.83.04.12.0-2.00.9
Baseline Anxiety0.30.40.8-0.40.5-0.9
Tail length1.76.611.61.9-2.13.4
Length with tail2.611.414.33.1-3.23.8
Length without tail3.611.414.03.7-3.72.5
Times rat made contact with spout0.40.50.5-0.70.7-0.6
Lifetime Intake2.73.24.32.1-2.11.1
Liver weight, left1.01.72.41.1-1.21.5
Liver weight, right0.20.40.6-0.80.8-0.1
Locomotor activity0.30.50.5-0.70.7-0.7
Locomotor testing distance0.10.10.20.4-0.4-0.1
Locomotor testing rearing0.00.10.20.0-0.00.4
Locomotion in novel chamber0.50.71.0-0.70.7-1.0
Locomotion in novel chamber post-restriction0.71.21.3-1.11.1-1.0
Fecal boli incidents, locomotor time 10.20.30.4-0.60.60.3
Change in fecal boli incidents, locomotor task2.22.22.8-1.31.4-1.7
Time >=10cm from walls, locomotor time 10.30.30.50.7-0.6-0.2
Bouts of movement, locomotor time 13.03.45.4-2.32.20.3
Total resting periods, locomotor time 11.71.82.9-1.71.6-0.1
Rest time, locomotor task time 10.50.61.00.6-0.61.0
Distance moved, locomotor task time 10.50.81.2-0.70.8-1.1
Vertical activity count, locomotor time 13.37.810.2-3.23.2-1.8
Time >=10cm from walls, locomotor time 20.30.40.60.6-0.5-0.8
Bouts of movement, locomotor time 20.00.00.1-0.20.2-0.1
Total resting periods, locomotor time 20.10.10.2-0.40.40.0
Rest time, locomotor task time 21.11.42.2-1.51.4-0.1
Distance moved, locomotor task time 20.00.10.1-0.20.2-0.3
Vertical activity count, locomotor time 21.11.52.2-1.51.4-0.6
Light reinforcement 10.61.62.5-1.61.50.1
Light reinforcement 20.20.30.6-0.40.4-0.8
Bone: marrow area1.63.55.81.5-1.62.4
Bone: maximum diameter0.20.30.8-0.30.20.9
Bone: maximum force0.71.23.40.1-0.31.8
Bone: maximum moment0.81.44.0-0.0-0.12.0
Mean time between licks in bursts0.61.51.8-1.41.3-0.9
Mean num. licks in bursts0.30.50.6-0.80.8-0.4
Cd content in liver1.11.21.31.1-1.11.1
Co content in liver0.91.11.11.0-1.11.1
Cu content in liver3.84.55.62.4-2.41.6
Fe content in liver2.12.53.41.8-1.81.0
K content in liver0.10.10.20.5-0.50.1
Mg content in liver0.70.71.11.0-1.0-0.1
Mn content in liver0.30.30.60.7-0.7-0.1
Na content in liver0.40.51.4-0.10.2-1.2
Rb content in liver4.45.15.72.4-2.42.0
Se content in liver1.11.22.5-0.70.8-1.6
Sr content in liver13.211.413.8-3.73.7-2.6
Zn content in liver1.51.72.61.6-1.5-0.6
Bone: minimum diameter0.71.34.0-0.0-0.12.0
Time in familiar zone, hab. session 11.41.42.4-1.00.81.5
Time in novel zone, hab. session 11.61.62.11.4-1.3-1.0
Total zone transitions, hab. session 10.50.61.9-0.10.01.4
Total locomotion distance, hab. session 11.01.42.2-1.51.40.3
Locomotion velocity, hab. session 10.60.81.3-1.11.00.3
Time in familiar zone, hab. session 22.42.52.81.6-1.71.5
Time in novel zone, hab. session 20.40.41.0-0.40.4-1.0
Total zone transitions, hab. session 20.81.12.2-0.80.61.5
Total locomotion distance, hab. session 22.43.25.0-2.22.1-0.3
Locomotion velocity, hab. session 23.04.06.1-2.52.4-0.5
Novel to familiar place preference ratio0.70.71.1-1.01.0-0.2
Novelty place preference0.20.30.4-0.60.60.2
Time in novel zone, NPP test0.10.10.2-0.40.40.2
Total zone transitions, NPP test0.40.60.9-0.90.80.3
Total locomotion distance, NPP test1.31.82.7-1.71.6-0.3
Locomotion velocity, NPP test1.52.13.3-1.81.7-0.2
Intraocular pressure0.20.30.40.6-0.60.3
Delta distance traveled before/after self-admin2.32.42.9-1.51.5-1.7
Delta ambulatory time before/after self-admin1.82.22.3-1.41.5-1.5
Parametrial fat weight2.04.75.2-2.12.1-2.3
Pavlov. Cond. lever latency0.00.00.00.2-0.2-0.0
Pavlov. Cond. magazine entry latency0.91.11.6-0.91.0-1.2
Pavlov. Cond. change in total contacts0.30.30.4-0.60.6-0.5
Pavlov. Cond. index score0.50.60.7-0.80.8-0.7
Pavlov. Cond. latency score0.50.60.7-0.80.9-0.7
Pavlov. Cond. lever contacts0.00.00.00.1-0.10.0
Pavlov. Cond. magazine entry number0.60.80.80.9-0.90.9
Pavlov. Cond. intertrial magazine entries0.20.20.3-0.50.50.4
Pavlov. Cond. lever-magazine prob. diff.0.40.60.6-0.80.8-0.7
Pavlov. Cond. response bias0.10.10.2-0.20.2-0.5
Pavlov. Cond. lever latency4.05.47.12.7-2.61.5
Pavlov. Cond. magazine entry latency2.22.72.9-1.61.7-1.6
Pavlov. Cond. change in total contacts1.42.23.4-1.91.8-0.2
Pavlov. Cond. index score2.22.93.8-2.01.9-1.1
Pavlov. Cond. latency score2.83.84.6-2.12.1-1.5
Pavlov. Cond. lever contacts3.14.35.9-2.42.4-1.2
Pavlov. Cond. magazine entry number1.41.71.81.3-1.41.2
Pavlov. Cond. intertrial magazine entries3.04.56.21.8-1.92.5
Pavlov. Cond. lever-magazine prob. diff.2.12.93.7-1.91.9-1.1
Pavlov. Cond. response bias1.72.43.5-1.91.8-0.5
Time in closed arm before self-admin0.70.91.20.8-0.91.1
Time in closed arm after self-admin0.50.50.70.8-0.80.4
Time in open arm before self-admin2.72.93.2-1.71.8-1.6
Time in open arm after self-admin0.50.60.7-0.80.8-0.6
Bone: periosteal estimation0.71.43.70.4-0.51.9
Bone: periosteal perimeter0.61.02.60.4-0.51.6
Bone: post-yield work2.63.84.12.0-2.01.9
Progressive ratio test 1 active lever presses0.20.20.6-0.20.10.8
Progressive ratio test 1 breakpoint0.20.20.6-0.30.20.8
Progressive ratio test 1 inactive lever presses2.84.14.22.0-2.12.0
Progressive ratio test 2 active lever presses2.42.94.02.0-2.00.8
Progressive ratio test 2 breakpoint3.03.44.82.2-2.20.9
Progressive ratio test 2 inactive lever presses3.15.05.22.2-2.32.2
Incentive Sensitization - Responses4.76.69.03.0-3.01.4
Incentive Sensitization - Breakpoint4.55.98.32.9-2.81.1
Sum of active levers in priming session hrs 5-60.60.50.8-0.90.90.1
Progressive ratio1.01.62.4-1.51.5-0.4
Food seeking constrained by brief footshock24.329.746.7-6.86.5-0.4
Seeking ratio, punishment vs. effort1.01.42.0-1.41.30.8
Retroperitoneal fat weight1.87.719.1-1.21.5-4.4
Reaction time number correct1.63.13.9-2.02.0-1.2
Reaction time mean minus median0.20.50.70.9-0.80.1
Reaction time mean minus median AUC0.30.61.01.0-1.00.1
Reaction time num false alarms0.00.10.1-0.30.30.0
Reaction time num false alarms AUC0.60.91.3-1.11.1-0.4
Reaction time trials correct on left1.63.13.9-2.02.0-1.2
Reaction time trials on left1.63.03.9-2.01.9-1.2
Reaction time mean3.45.37.32.7-2.71.3
Reaction time mean AUC2.74.36.32.5-2.40.8
Median of all reaction times3.95.57.62.8-2.71.3
Reaction time omissions0.10.10.2-0.50.40.1
Reaction time false alarm rate0.00.00.1-0.10.10.3
Reaction time premature initiation rate0.00.00.0-0.10.10.0
Reaction time premature initiations0.51.01.2-1.11.1-0.7
Std. dev. reaction times1.22.33.11.8-1.70.8
Reaction time trials completed1.63.03.9-2.01.9-1.2
Reaction time trials AUC1.52.93.6-1.91.9-1.2
Run reversals in cocaine runway, females1.11.11.61.3-1.20.5
Run reversals in cocaine runway, males0.60.60.90.9-0.90.3
Latency to leave start box in cocaine runway0.70.80.90.8-0.91.0
Latency to leave start box in cocaine runway, F0.10.10.10.2-0.20.4
Latency to leave start box in cocaine runway, M2.72.52.71.6-1.61.5
Std. dev. time between licks in bursts0.70.91.5-1.21.1-0.0
Total sessions with >9 infusions1.21.51.91.1-1.21.4
Short access day 1 total inactive lever presses3.34.45.82.4-2.41.3
Short access day 10 total inactive lever presses0.20.40.40.6-0.60.7
Short access day 1 total infusions0.30.40.50.7-0.70.4
Short access day 10 total infusions0.10.10.20.4-0.4-0.0
Short access total infusions0.00.00.10.2-0.2-0.1
Short access day 1 locomotion3.44.25.82.4-2.41.1
Short access day 10 total locomotion0.30.61.90.0-0.11.4
Short access total locomotion0.50.60.8-0.90.80.7
One hour access (0.3 mA shock)7.18.29.73.1-3.12.3
Compulsive drug intake2.73.23.61.8-1.91.6
One hour access (shock baseline)2.23.35.02.2-2.20.6
Social response proportion4.65.27.02.6-2.61.3
Social responses6.27.99.03.0-3.02.5
Social time1.21.64.5-0.40.22.1
Soleus weight0.20.50.8-0.90.8-0.1
Bone: stiffness1.32.24.01.1-1.22.0
Tibialis anterior weight1.86.06.6-2.52.6-2.2
Time to tail flick, vehicle, before self-admin0.50.50.8-0.90.80.3
Time to tail flick, vehicle, after self-admin3.03.95.32.3-2.31.2
Time to tail flick, test, before self-admin5.96.19.6-3.12.9-0.1
Time to tail flick, test, after self-admin0.10.10.3-0.20.2-0.5
Delta time to tail flick, vehicle, before/after SA2.72.53.92.0-1.90.4
Delta time to tail flick, test, before/after SA3.23.35.22.3-2.20.1
Tibia length1.43.99.01.1-1.33.0
Ambulatory time before self-admin1.82.73.5-1.91.71.3
Ambulatory time after self-admin6.47.511.8-3.43.3-0.2
Bone: tissue strength2.92.94.6-2.12.0-0.0
Total heroin consumption0.30.30.5-0.70.7-0.2
Bone: trabecular number0.81.31.7-1.31.3-0.8
Bone: trabecular spacing0.00.00.0-0.20.2-0.0
Bone: trabecular thickness0.10.10.20.4-0.40.0
Bone: trabecular tissue density0.91.31.91.4-1.2-0.8
Water consumed over 24 hours0.30.40.8-0.50.40.9
Number of responses in last shaping day3.43.75.62.4-2.30.6