Ugt2b35

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression Ugt2b35 0.5 0.17 0.0e+00 0.27 0.29 0.29 0.29 2.0e-30 1.2e-32 8.1e-33 1.3e-32
2 Liver mRNA stability Ugt2b35 0.66 0.13 0.0e+00 0.5 0.49 0.5 0.47 1.3e-63 3.8e-62 3.9e-64 3.8e-59
3 pVTA gene expression Ugt2b35 0.04 0.03 4.5e-03 0.06 0.04 0.04 0.05 2.2e-05 7.8e-04 6.0e-04 6.9e-05
4 PL gene expression Ugt2b35 0.04 0.03 2.0e-03 0 0.01 0.02 0.01 1.7e-01 2.3e-02 7.1e-03 1.4e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.00.00.0-0.2-0.10.20.0
Area under the delay curve0.00.00.0-0.00.1-0.00.0
BMI with tail0.72.34.2-2.1-2.01.00.0
BMI without tail0.61.73.4-1.8-1.70.70.0
Body weight0.00.10.3-0.4-0.5-0.20.0
Weight adjusted by age1.42.24.8-1.4-1.32.20.0
Bone surface0.00.00.1-0.0-0.10.30.0
Bone volume0.20.30.60.80.7-0.50.0
Breakpoint value in progressive ratio session0.50.61.50.60.6-1.20.0
Number of licking bursts0.10.10.2-0.4-0.40.50.0
Context. condit. distance diff. score0.00.10.20.20.10.40.0
Locomotion velocity, session 10.20.20.5-0.7-0.60.10.0
Locomotion distance, session 10.20.30.60.60.5-0.80.0
Locomotion velocity, session 20.00.00.10.20.1-0.00.0
Locomotion distance, session 20.10.20.30.50.4-0.60.0
Locomotion velocity, session 30.50.60.90.90.9-0.90.0
Locomotion distance, session 30.00.00.10.20.2-0.20.0
Stereotopy head waving bouts, day 30.40.40.7-0.9-0.80.60.0
Stereotopy head waving duration, day 30.00.00.1-0.3-0.30.00.0
Locomotion velocity, session 72.42.63.61.91.8-1.90.0
Locomotion distance, session 71.21.52.51.61.5-1.30.0
Stereotopy head waving bouts, day 70.40.40.6-0.8-0.70.70.0
Stereotopy head waving duration, day 70.20.20.5-0.7-0.60.30.0
Locomotion velocity, session 80.00.00.1-0.1-0.10.30.0
Locomotion distance, session 80.20.30.70.80.7-0.40.0
Degree of sensitization distance0.90.91.51.21.1-0.90.0
Degree of sensitization stereotypy0.10.10.1-0.3-0.20.30.0
Conditioned locomotion0.20.20.4-0.6-0.60.30.0
Cocaine response after cond. corrected0.50.61.11.01.0-0.60.0
Cocaine response after cond. not corrected0.40.50.90.90.9-0.50.0
Cocaine response before conditioning0.20.20.3-0.5-0.50.50.0
Saline control response0.40.60.80.90.9-0.80.0
Bone: connectivity density0.10.10.2-0.5-0.40.20.0
Bone: cortical apparent density0.20.20.70.20.4-0.90.0
Bone: cortical area0.20.30.50.70.6-0.70.0
Bone: cortical porosity1.21.31.7-1.3-1.31.30.0
Bone: cortical porosity2.52.83.8-1.9-1.91.90.0
Bone: cortical thickness0.10.20.4-0.6-0.70.40.0
Bone: cortical thickness0.10.10.20.40.40.10.0
Bone: cortical tissue density0.10.20.60.10.3-0.80.0
Condit. Reinf. active minus inactive responses0.40.40.7-0.8-0.80.60.0
Condit. Reinf. active-inactive response ratio2.52.73.9-1.9-2.01.80.0
Condit. Reinf. active responses0.00.10.10.30.2-0.30.0
Condit. Reinf. inactive responses1.72.13.21.81.8-1.50.0
Incentive salience index mean0.00.00.0-0.1-0.20.00.0
Condit. Reinf. lever presses0.00.00.0-0.0-0.00.00.0
Condit. Reinf. active minus inactive responses0.10.20.40.40.5-0.60.0
Condit. Reinf. active-inactive response ratio0.30.30.60.50.6-0.80.0
Condit. Reinf. active responses0.10.20.30.50.5-0.50.0
Condit. Reinf. inactive responses0.10.20.40.60.5-0.30.0
Condit. Reinf. lever presses0.50.60.90.91.0-0.90.0
Condit. Reinf. lever reinforcers received0.20.20.30.60.5-0.50.0
Conditioned reinforcement - actives0.00.10.1-0.3-0.30.30.0
Conditioned reinforcement - inactives0.30.51.00.91.0-0.40.0
Conditioned locomotion0.00.00.00.20.1-0.10.0
Patch foraging indifference point 0 sec0.30.61.00.90.8-1.00.0
Patch foraging indifference point AUC2.53.65.42.32.3-1.90.0
Delay disc. indifference point, 0s delay0.00.00.0-0.2-0.10.00.0
Delay disc. indifference point, 16s delay0.30.40.8-0.9-0.70.30.0
Delay disc. indifference point, 2s delay3.03.45.02.12.0-2.20.0
Delay disc. indifference point, 24s delay0.00.00.1-0.2-0.30.30.0
Delay disc. indifference point, 4s delay0.20.20.40.40.7-0.20.0
Delay disc. indifference point, 8s delay0.80.91.5-1.2-1.11.00.0
Indifference point function ln k1.11.92.9-1.7-1.71.30.0
Indifference point function log k1.11.92.9-1.7-1.71.30.0
Patch foraging total patch changes 0 sec0.40.81.11.00.9-1.10.0
Patch foraging total patch changes 12 sec0.81.01.41.21.1-1.10.0
Patch foraging total patch changes 18 sec0.30.50.80.80.9-0.70.0
Patch foraging total patch changes 24 sec0.81.42.41.51.4-1.10.0
Patch foraging total patch changes 6 sec1.82.84.02.01.9-1.80.0
Patch foraging time to switch 0 sec2.24.57.1-2.7-2.52.10.0
Patch foraging water rate 0 sec1.12.43.41.81.6-1.80.0
Patch foraging water rate 12 sec0.10.20.50.70.60.20.0
Patch foraging water rate 18 sec1.11.72.81.71.5-1.30.0
Patch foraging water rate 24 sec0.71.01.51.21.1-1.10.0
Patch foraging water rate 6 sec0.50.71.21.11.0-0.90.0
Seeking ratio, delayed vs. immediate footshock0.40.51.20.91.1-0.30.0
Distance traveled before self-admin0.10.10.40.2-0.0-0.70.0
Distance traveled after self-admin2.53.15.32.32.2-1.50.0
Extensor digitorum longus weight8.433.046.5-6.8-6.76.40.0
Bone: elastic displacement0.30.30.6-0.6-0.60.70.0
Bone: elastic work0.20.20.4-0.5-0.50.60.0
Bone: endosteal estimation0.81.72.81.71.6-1.20.0
Bone: endosteal perimeter0.10.20.30.60.6-0.40.0
Epididymis fat weight0.10.31.20.10.1-1.10.0
Delta time in closed arm before/after self-admin1.31.22.0-1.2-1.11.40.0
Delta time in open arm before/after self-admin0.70.71.10.90.9-1.00.0
Diff in mean of infusions in LGA sessions0.00.00.1-0.3-0.20.30.0
Delay discount exponential model param0.00.00.1-0.2-0.30.20.0
Extinction: sum of active levers before priming0.00.00.0-0.1-0.10.00.0
Active lever presses in extinction session 60.60.60.80.90.9-0.90.0
Bone: final force0.00.00.10.30.2-0.20.0
Bone: final moment0.00.00.10.30.2-0.20.0
Food consumed during 24 hour testing period1.31.83.21.81.7-1.10.0
Glucose0.50.81.41.21.1-0.80.0
Heart weight0.50.71.2-1.1-1.10.60.0
Delay discount hyperbolic model param0.10.20.3-0.5-0.50.40.0
Intermittent access intake day 1-15 change0.30.60.9-0.8-0.90.90.0
Intermittent access intake escalation0.40.81.1-1.1-1.00.90.0
Intermittent access intake escalation 20.10.10.20.30.40.20.0
Intermitt. access day 1 inactive lever presses0.52.03.71.81.9-1.00.0
Intermitt. access day 15 inactive lever presses1.63.34.82.22.2-1.90.0
Intermitt. access escalation Index0.40.60.9-0.9-0.90.70.0
Intermittent access day 1 total infusions0.00.10.20.10.10.40.0
Intermittent access day 15 total infusions0.10.20.7-0.2-0.10.80.0
Intermittent access terminal intake (last 3 days)0.20.30.60.70.80.10.0
Intermittent access total infusions0.00.10.10.20.20.40.0
Intermittent access day 1 locomotion0.30.40.50.70.7-0.70.0
Intermittent access day 15 total locomotion0.00.00.10.30.20.30.0
Intermittent access total locomotion0.00.00.1-0.1-0.1-0.20.0
Intermittent access standard deviation0.20.41.00.91.00.00.0
Left kidney weight0.00.00.00.0-0.10.20.0
Right kidney weight0.10.30.60.60.6-0.80.0
Cocaine induced anxiety0.10.20.3-0.5-0.40.50.0
Post-drug Anxiety0.00.00.0-0.1-0.00.10.0
Baseline Anxiety0.10.10.20.40.40.10.0
Tail length0.20.81.41.21.1-0.80.0
Length with tail0.20.71.41.21.0-0.70.0
Length without tail0.10.30.80.90.6-0.30.0
Times rat made contact with spout0.20.20.50.50.5-0.70.0
Lifetime Intake0.00.00.1-0.2-0.10.30.0
Liver weight, left0.91.52.41.31.4-1.60.0
Liver weight, right1.62.74.01.91.8-2.00.0
Locomotor activity0.20.30.60.80.5-0.50.0
Locomotor testing distance0.00.00.00.2-0.00.20.0
Locomotor testing rearing0.00.00.10.1-0.10.20.0
Locomotion in novel chamber0.00.10.20.1-0.0-0.40.0
Locomotion in novel chamber post-restriction0.50.91.90.90.9-1.40.0
Fecal boli incidents, locomotor time 10.91.32.4-1.6-1.40.80.0
Change in fecal boli incidents, locomotor task0.10.10.1-0.2-0.20.30.0
Time >=10cm from walls, locomotor time 11.61.72.7-1.5-1.31.70.0
Bouts of movement, locomotor time 10.91.01.7-1.2-1.11.30.0
Total resting periods, locomotor time 10.60.61.0-0.9-0.81.00.0
Rest time, locomotor task time 10.20.30.60.80.6-0.50.0
Distance moved, locomotor task time 10.10.10.2-0.4-0.40.30.0
Vertical activity count, locomotor time 10.20.40.90.60.6-0.90.0
Time >=10cm from walls, locomotor time 20.30.51.1-0.7-0.51.00.0
Bouts of movement, locomotor time 20.00.00.10.10.3-0.20.0
Total resting periods, locomotor time 20.00.00.00.00.2-0.20.0
Rest time, locomotor task time 20.10.20.40.60.4-0.30.0
Distance moved, locomotor task time 20.50.61.0-1.0-1.00.70.0
Vertical activity count, locomotor time 20.10.10.20.30.3-0.50.0
Light reinforcement 10.51.32.21.21.2-1.50.0
Light reinforcement 20.00.00.0-0.1-0.1-0.10.0
Bone: marrow area0.71.62.61.61.5-1.10.0
Bone: maximum diameter0.00.00.10.10.1-0.40.0
Bone: maximum force0.10.10.30.50.4-0.30.0
Bone: maximum moment0.10.20.40.60.4-0.40.0
Mean time between licks in bursts1.74.16.1-2.4-2.52.20.0
Mean num. licks in bursts0.61.01.61.01.1-1.30.0
Cd content in liver4.34.87.0-2.7-2.52.50.0
Co content in liver0.00.00.1-0.2-0.30.00.0
Cu content in liver0.00.00.10.30.3-0.20.0
Fe content in liver0.10.20.3-0.4-0.40.50.0
K content in liver0.50.50.80.80.9-0.70.0
Mg content in liver0.30.30.40.50.6-0.70.0
Mn content in liver0.20.20.4-0.4-0.50.60.0
Na content in liver0.70.81.21.01.1-1.00.0
Rb content in liver0.70.91.5-1.2-1.20.80.0
Se content in liver0.10.10.10.40.3-0.10.0
Sr content in liver0.50.40.8-0.6-0.60.90.0
Zn content in liver0.20.20.3-0.5-0.50.50.0
Bone: minimum diameter4.17.511.23.33.1-3.00.0
Time in familiar zone, hab. session 10.00.00.10.30.3-0.10.0
Time in novel zone, hab. session 10.20.20.3-0.6-0.50.20.0
Total zone transitions, hab. session 10.20.30.70.50.6-0.90.0
Total locomotion distance, hab. session 11.31.82.71.61.6-1.40.0
Locomotion velocity, hab. session 10.91.31.91.41.4-1.20.0
Time in familiar zone, hab. session 20.10.10.1-0.3-0.20.30.0
Time in novel zone, hab. session 20.00.00.1-0.0-0.1-0.30.0
Total zone transitions, hab. session 20.00.00.0-0.0-0.0-0.00.0
Total locomotion distance, hab. session 20.30.40.60.80.8-0.60.0
Locomotion velocity, hab. session 20.30.40.60.80.8-0.60.0
Novel to familiar place preference ratio0.30.30.70.50.5-0.80.0
Novelty place preference0.10.10.40.20.2-0.70.0
Time in novel zone, NPP test0.30.30.90.40.5-0.90.0
Total zone transitions, NPP test0.10.10.20.10.2-0.50.0
Total locomotion distance, NPP test0.10.10.20.50.5-0.30.0
Locomotion velocity, NPP test0.00.00.00.10.10.00.0
Intraocular pressure0.40.60.9-0.9-0.90.80.0
Delta distance traveled before/after self-admin1.92.03.81.91.9-0.80.0
Delta ambulatory time before/after self-admin0.70.91.71.31.3-0.10.0
Parametrial fat weight1.84.27.22.22.1-2.70.0
Pavlov. Cond. lever latency1.01.31.8-1.4-1.21.40.0
Pavlov. Cond. magazine entry latency0.00.00.1-0.0-0.10.30.0
Pavlov. Cond. change in total contacts0.00.00.10.30.2-0.20.0
Pavlov. Cond. index score0.30.40.60.80.6-0.70.0
Pavlov. Cond. latency score0.40.50.80.90.7-0.70.0
Pavlov. Cond. lever contacts0.81.01.41.21.0-1.20.0
Pavlov. Cond. magazine entry number0.00.00.0-0.10.1-0.10.0
Pavlov. Cond. intertrial magazine entries0.40.51.00.70.7-1.00.0
Pavlov. Cond. lever-magazine prob. diff.0.40.50.70.80.7-0.80.0
Pavlov. Cond. response bias0.30.40.60.70.6-0.70.0
Pavlov. Cond. lever latency0.20.30.50.60.6-0.70.0
Pavlov. Cond. magazine entry latency1.31.52.4-1.4-1.41.50.0
Pavlov. Cond. change in total contacts0.40.61.1-0.8-0.81.00.0
Pavlov. Cond. index score0.70.91.3-1.1-1.01.20.0
Pavlov. Cond. latency score1.11.42.1-1.4-1.31.50.0
Pavlov. Cond. lever contacts0.00.00.1-0.2-0.10.30.0
Pavlov. Cond. magazine entry number2.22.84.31.91.8-2.10.0
Pavlov. Cond. intertrial magazine entries2.13.15.61.81.9-2.40.0
Pavlov. Cond. lever-magazine prob. diff.0.60.91.3-1.1-1.01.10.0
Pavlov. Cond. response bias0.40.50.8-0.8-0.80.90.0
Time in closed arm before self-admin0.40.50.80.80.6-0.90.0
Time in closed arm after self-admin0.60.61.6-0.6-0.71.30.0
Time in open arm before self-admin0.40.40.7-0.7-0.80.60.0
Time in open arm after self-admin1.41.53.01.21.3-1.70.0
Bone: periosteal estimation0.51.01.51.21.1-1.00.0
Bone: periosteal perimeter0.10.20.30.50.5-0.40.0
Bone: post-yield work0.00.10.10.30.3-0.30.0
Progressive ratio test 1 active lever presses0.00.00.0-0.1-0.10.10.0
Progressive ratio test 1 breakpoint0.00.00.0-0.1-0.10.20.0
Progressive ratio test 1 inactive lever presses2.02.94.22.02.1-1.90.0
Progressive ratio test 2 active lever presses0.10.10.4-0.2-0.10.70.0
Progressive ratio test 2 breakpoint0.10.10.4-0.2-0.10.70.0
Progressive ratio test 2 inactive lever presses0.50.81.71.11.3-0.50.0
Incentive Sensitization - Responses0.30.41.1-0.6-0.51.10.0
Incentive Sensitization - Breakpoint0.40.51.3-0.6-0.51.10.0
Sum of active levers in priming session hrs 5-60.10.10.10.40.4-0.10.0
Progressive ratio0.10.10.40.1-0.1-0.70.0
Food seeking constrained by brief footshock0.00.00.1-0.2-0.3-0.20.0
Seeking ratio, punishment vs. effort0.20.20.50.60.7-0.20.0
Retroperitoneal fat weight0.20.82.00.80.7-1.40.0
Reaction time number correct0.00.00.0-0.2-0.20.00.0
Reaction time mean minus median0.20.40.7-0.8-0.60.80.0
Reaction time mean minus median AUC0.10.20.3-0.6-0.40.60.0
Reaction time num false alarms0.40.61.70.50.6-1.30.0
Reaction time num false alarms AUC0.20.31.10.20.3-1.10.0
Reaction time trials correct on left0.00.00.0-0.2-0.20.00.0
Reaction time trials on left0.00.00.1-0.3-0.20.10.0
Reaction time mean0.60.91.6-1.1-0.91.30.0
Reaction time mean AUC0.40.60.9-1.0-0.71.00.0
Median of all reaction times0.60.81.5-1.1-0.81.20.0
Reaction time omissions0.91.31.8-1.3-1.31.30.0
Reaction time false alarm rate0.20.30.90.30.3-1.00.0
Reaction time premature initiation rate0.30.40.60.70.8-0.80.0
Reaction time premature initiations0.30.40.80.70.8-0.90.0
Std. dev. reaction times0.30.50.9-0.9-0.70.90.0
Reaction time trials completed0.00.00.1-0.3-0.20.10.0
Reaction time trials AUC0.00.10.1-0.4-0.30.20.0
Run reversals in cocaine runway, females1.61.62.71.71.5-1.20.0
Run reversals in cocaine runway, males0.10.10.2-0.4-0.5-0.10.0
Latency to leave start box in cocaine runway1.71.93.31.71.8-1.10.0
Latency to leave start box in cocaine runway, F3.84.46.42.52.5-2.20.0
Latency to leave start box in cocaine runway, M0.30.20.9-0.00.21.00.0
Std. dev. time between licks in bursts1.01.42.1-1.3-1.51.30.0
Total sessions with >9 infusions0.60.71.4-1.1-1.20.20.0
Short access day 1 total inactive lever presses0.30.40.90.91.0-0.10.0
Short access day 10 total inactive lever presses0.30.81.81.21.30.20.0
Short access day 1 total infusions0.20.30.40.60.6-0.60.0
Short access day 10 total infusions0.10.10.3-0.3-0.20.60.0
Short access total infusions0.10.20.3-0.6-0.50.20.0
Short access day 1 locomotion0.10.20.4-0.3-0.40.60.0
Short access day 10 total locomotion0.00.00.0-0.1-0.2-0.00.0
Short access total locomotion0.10.10.2-0.4-0.50.00.0
One hour access (0.3 mA shock)0.10.10.10.40.3-0.10.0
Compulsive drug intake0.40.50.80.80.7-0.90.0
One hour access (shock baseline)0.00.00.1-0.2-0.10.30.0
Social response proportion1.71.92.81.61.7-1.50.0
Social responses0.81.11.81.21.0-1.30.0
Social time0.50.60.90.91.0-0.90.0
Soleus weight0.61.83.4-1.4-1.41.80.0
Bone: stiffness0.71.11.61.31.1-1.20.0
Tibialis anterior weight3.311.116.1-4.0-3.93.60.0
Time to tail flick, vehicle, before self-admin0.91.01.81.41.2-0.80.0
Time to tail flick, vehicle, after self-admin0.40.60.90.90.8-1.00.0
Time to tail flick, test, before self-admin0.00.00.0-0.1-0.2-0.10.0
Time to tail flick, test, after self-admin1.11.11.61.21.2-1.10.0
Delta time to tail flick, vehicle, before/after SA0.10.10.40.10.1-0.60.0
Delta time to tail flick, test, before/after SA0.70.81.21.01.1-0.90.0
Tibia length0.10.30.50.70.6-0.60.0
Ambulatory time before self-admin0.10.10.50.20.0-0.70.0
Ambulatory time after self-admin2.73.25.22.32.1-1.80.0
Bone: tissue strength0.60.60.91.00.9-0.90.0
Total heroin consumption0.30.30.60.80.6-0.60.0
Bone: trabecular number0.00.00.10.10.2-0.40.0
Bone: trabecular spacing0.00.00.00.10.0-0.20.0
Bone: trabecular thickness0.10.10.20.30.4-0.10.0
Bone: trabecular tissue density0.30.40.7-0.9-0.90.40.0
Water consumed over 24 hours1.01.42.01.41.4-1.20.0
Number of responses in last shaping day0.00.00.1-0.3-0.2-0.00.0