Ugt2b-ps1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression Ugt2b-ps1 0.34 0.14 0.0e+00 0.2 0.22 0.25 0.26 2.3e-21 2.4e-24 3.2e-27 3.8e-29
2 Liver intron excision ratio chr14_20989813_20990844 0.18 0.11 2.8e-16 0.13 0.12 0.13 0.14 8.4e-14 5.2e-13 2.2e-14 1.8e-15
3 Liver intron excision ratio chr14_21126776_21134214 0.67 0.11 0.0e+00 0.5 0.42 0.51 0.51 3.1e-63 1.2e-50 2.8e-65 1.4e-65
4 Liver intron excision ratio chr14_21076424_21087889 0.74 0.07 0.0e+00 0.35 0.26 0.38 0.36 2.3e-40 2.5e-28 2.3e-44 3.7e-42

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.00.00.10.3-0.2-0.2-0.1
Area under the delay curve0.00.10.10.3-0.2-0.3-0.0
BMI with tail2.27.69.23.0-2.6-3.0-2.4
BMI without tail1.26.27.92.6-2.3-2.8-2.2
Body weight0.31.42.11.3-1.0-1.4-1.1
Weight adjusted by age0.20.71.10.5-1.1-0.8-0.8
Bone surface0.00.10.1-0.40.20.30.1
Bone volume0.20.50.5-0.70.70.70.7
Breakpoint value in progressive ratio session0.10.20.5-0.30.40.40.7
Number of licking bursts0.00.10.20.3-0.4-0.3-0.4
Context. condit. distance diff. score1.11.32.7-1.60.91.20.5
Locomotion velocity, session 11.41.62.41.5-1.1-1.3-1.0
Locomotion distance, session 10.30.30.4-0.60.60.60.4
Locomotion velocity, session 20.00.10.1-0.30.20.20.1
Locomotion distance, session 20.10.10.2-0.40.40.40.3
Locomotion velocity, session 30.70.81.0-0.81.00.91.0
Locomotion distance, session 30.10.10.1-0.40.30.30.3
Stereotopy head waving bouts, day 30.91.11.31.1-1.1-1.0-0.9
Stereotopy head waving duration, day 30.20.20.40.6-0.5-0.4-0.3
Locomotion velocity, session 71.92.12.5-1.31.61.21.6
Locomotion distance, session 71.62.12.4-1.61.51.41.3
Stereotopy head waving bouts, day 70.30.30.50.6-0.7-0.4-0.4
Stereotopy head waving duration, day 70.50.71.21.1-0.9-0.7-0.4
Locomotion velocity, session 80.10.10.2-0.50.20.30.0
Locomotion distance, session 81.62.34.0-2.01.31.60.9
Degree of sensitization distance1.21.31.6-1.31.21.11.0
Degree of sensitization stereotypy0.00.00.00.1-0.10.20.2
Conditioned locomotion0.20.20.40.3-0.4-0.4-0.6
Cocaine response after cond. corrected0.60.91.0-0.81.01.01.0
Cocaine response after cond. not corrected0.71.01.0-1.01.01.00.9
Cocaine response before conditioning0.10.10.20.1-0.2-0.4-0.4
Saline control response0.70.91.2-1.11.00.80.9
Bone: connectivity density0.20.40.50.7-0.5-0.7-0.6
Bone: cortical apparent density0.40.61.61.3-0.4-0.9-0.2
Bone: cortical area0.10.20.4-0.40.40.40.6
Bone: cortical porosity0.80.81.00.7-1.0-0.9-1.0
Bone: cortical porosity2.52.83.21.4-1.8-1.7-1.7
Bone: cortical thickness0.30.50.70.7-0.8-0.8-0.6
Bone: cortical thickness0.50.60.9-0.90.70.80.7
Bone: cortical tissue density0.50.71.81.3-0.5-0.9-0.2
Condit. Reinf. active minus inactive responses1.01.11.31.0-1.0-1.1-1.1
Condit. Reinf. active-inactive response ratio2.83.03.61.4-1.9-1.8-1.8
Condit. Reinf. active responses0.00.00.00.20.0-0.1-0.1
Condit. Reinf. inactive responses1.62.02.7-1.11.61.51.4
Incentive salience index mean0.10.20.20.3-0.4-0.4-0.4
Condit. Reinf. lever presses0.00.00.0-0.00.00.20.1
Condit. Reinf. active minus inactive responses0.10.10.2-0.10.40.30.3
Condit. Reinf. active-inactive response ratio0.10.20.3-0.20.50.40.5
Condit. Reinf. active responses0.20.20.3-0.40.60.50.3
Condit. Reinf. inactive responses0.40.61.0-1.00.80.80.4
Condit. Reinf. lever presses1.21.82.0-1.41.31.41.2
Condit. Reinf. lever reinforcers received0.40.50.6-0.70.80.70.5
Conditioned reinforcement - actives0.00.00.1-0.3-0.0-0.1-0.2
Conditioned reinforcement - inactives0.30.91.5-0.70.90.71.2
Conditioned locomotion0.10.10.2-0.40.30.2-0.3
Patch foraging indifference point 0 sec0.20.40.6-0.50.80.60.7
Patch foraging indifference point AUC1.33.03.8-1.41.91.61.9
Delay disc. indifference point, 0s delay0.10.10.20.4-0.3-0.4-0.1
Delay disc. indifference point, 16s delay1.01.41.91.4-1.1-1.3-0.9
Delay disc. indifference point, 2s delay2.73.03.3-1.71.81.81.7
Delay disc. indifference point, 24s delay0.00.10.10.1-0.2-0.2-0.4
Delay disc. indifference point, 4s delay0.10.10.40.10.20.10.6
Delay disc. indifference point, 8s delay1.11.92.31.3-1.4-1.5-1.3
Indifference point function ln k0.51.51.91.0-1.4-1.1-1.4
Indifference point function log k0.51.51.91.0-1.4-1.1-1.4
Patch foraging total patch changes 0 sec0.20.60.8-0.60.90.70.8
Patch foraging total patch changes 12 sec0.20.30.5-0.50.70.40.5
Patch foraging total patch changes 18 sec0.10.30.6-0.30.70.40.7
Patch foraging total patch changes 24 sec0.41.41.9-1.11.41.11.0
Patch foraging total patch changes 6 sec1.42.43.2-1.21.61.51.8
Patch foraging time to switch 0 sec1.66.36.92.5-2.6-2.5-2.3
Patch foraging water rate 0 sec0.62.42.7-1.61.61.71.3
Patch foraging water rate 12 sec0.31.11.8-1.41.01.10.6
Patch foraging water rate 18 sec1.43.24.1-2.01.71.91.4
Patch foraging water rate 24 sec2.53.55.2-2.31.72.11.4
Patch foraging water rate 6 sec0.71.01.2-1.11.01.10.9
Seeking ratio, delayed vs. immediate footshock0.91.21.9-1.11.00.91.4
Distance traveled before self-admin0.00.00.0-0.2-0.10.2-0.0
Distance traveled after self-admin4.57.89.1-3.02.53.02.7
Extensor digitorum longus weight8.935.641.75.7-6.5-5.9-5.8
Bone: elastic displacement0.00.10.1-0.4-0.20.1-0.1
Bone: elastic work0.10.10.4-0.60.10.30.2
Bone: endosteal estimation1.53.64.0-2.01.82.01.8
Bone: endosteal perimeter0.41.01.2-1.00.81.11.0
Epididymis fat weight0.20.91.81.3-0.7-1.1-0.5
Delta time in closed arm before/after self-admin1.00.91.30.9-1.2-0.9-0.8
Delta time in open arm before/after self-admin0.20.20.5-0.10.70.30.5
Diff in mean of infusions in LGA sessions0.00.00.1-0.1-0.10.20.1
Delay discount exponential model param0.00.00.0-0.10.10.1-0.2
Extinction: sum of active levers before priming0.10.10.3-0.30.20.60.2
Active lever presses in extinction session 60.40.40.5-0.60.70.70.7
Bone: final force0.00.00.1-0.10.10.20.3
Bone: final moment0.00.00.1-0.20.00.20.3
Food consumed during 24 hour testing period2.14.24.8-2.22.12.11.8
Glucose1.01.52.2-1.11.11.51.3
Heart weight0.71.11.40.9-1.2-1.0-1.0
Delay discount hyperbolic model param0.10.10.20.2-0.2-0.2-0.4
Intermittent access intake day 1-15 change0.10.50.80.4-0.7-0.6-0.9
Intermittent access intake escalation0.20.91.20.7-1.0-0.9-1.1
Intermittent access intake escalation 20.10.10.2-0.30.30.30.4
Intermitt. access day 1 inactive lever presses0.34.04.1-2.02.02.02.0
Intermitt. access day 15 inactive lever presses0.73.74.3-1.92.11.91.8
Intermitt. access escalation Index0.20.60.90.9-0.9-0.6-0.6
Intermittent access day 1 total infusions0.00.10.2-0.40.30.30.3
Intermittent access day 15 total infusions0.00.10.2-0.50.10.2-0.1
Intermittent access terminal intake (last 3 days)0.50.91.4-1.20.90.90.7
Intermittent access total infusions0.10.20.3-0.60.40.20.2
Intermittent access day 1 locomotion0.20.40.6-0.80.70.60.6
Intermittent access day 15 total locomotion0.00.00.1-0.20.1-0.2-0.3
Intermittent access total locomotion0.10.10.20.2-0.2-0.4-0.3
Intermittent access standard deviation0.31.41.7-1.31.11.11.2
Left kidney weight0.00.00.1-0.2-0.0-0.3-0.3
Right kidney weight0.00.00.10.10.1-0.3-0.0
Cocaine induced anxiety0.10.40.60.7-0.5-0.8-0.4
Post-drug Anxiety0.10.10.20.5-0.1-0.30.0
Baseline Anxiety0.71.11.8-1.30.71.30.9
Tail length0.31.52.1-1.41.31.11.0
Length with tail0.41.82.6-1.61.31.31.1
Length without tail0.21.11.6-1.20.91.20.8
Times rat made contact with spout0.10.10.2-0.10.30.30.4
Lifetime Intake0.00.00.0-0.1-0.1-0.10.0
Liver weight, left0.30.50.9-0.30.90.50.9
Liver weight, right1.01.82.5-1.41.61.21.2
Locomotor activity0.91.32.4-1.51.11.20.7
Locomotor testing distance0.30.81.6-1.30.80.90.4
Locomotor testing rearing0.20.61.1-1.10.60.70.5
Locomotion in novel chamber0.00.00.0-0.10.00.2-0.2
Locomotion in novel chamber post-restriction0.00.10.3-0.00.30.40.6
Fecal boli incidents, locomotor time 10.40.91.30.9-1.2-0.8-0.9
Change in fecal boli incidents, locomotor task0.00.00.10.4-0.2-0.10.1
Time >=10cm from walls, locomotor time 10.81.01.41.2-1.2-0.8-0.7
Bouts of movement, locomotor time 11.21.51.91.4-1.2-1.3-1.1
Total resting periods, locomotor time 10.91.11.51.2-0.9-1.1-0.9
Rest time, locomotor task time 10.71.21.7-1.31.11.20.6
Distance moved, locomotor task time 10.10.20.40.4-0.6-0.5-0.3
Vertical activity count, locomotor time 10.00.10.30.5-0.2-0.50.0
Time >=10cm from walls, locomotor time 20.00.00.00.1-0.10.00.1
Bouts of movement, locomotor time 20.00.00.1-0.20.10.10.3
Total resting periods, locomotor time 20.00.00.0-0.0-0.0-0.00.1
Rest time, locomotor task time 20.71.11.8-1.40.91.20.5
Distance moved, locomotor task time 21.21.72.11.2-1.3-1.5-1.2
Vertical activity count, locomotor time 20.10.20.40.6-0.3-0.6-0.1
Light reinforcement 10.21.01.5-0.91.20.71.0
Light reinforcement 20.10.10.20.2-0.1-0.5-0.4
Bone: marrow area1.43.54.0-1.91.82.01.7
Bone: maximum diameter0.00.10.10.4-0.3-0.30.1
Bone: maximum force0.20.40.4-0.60.40.60.7
Bone: maximum moment0.20.40.5-0.70.50.70.7
Mean time between licks in bursts1.06.26.72.3-2.6-2.5-2.6
Mean num. licks in bursts0.20.70.9-0.71.00.70.9
Cd content in liver4.04.55.72.1-2.4-2.1-1.8
Co content in liver0.10.20.30.4-0.3-0.3-0.5
Cu content in liver0.00.00.0-0.20.20.10.1
Fe content in liver0.70.91.11.0-0.8-1.0-0.9
K content in liver0.20.20.3-0.20.60.30.5
Mg content in liver0.00.00.00.20.2-0.10.1
Mn content in liver0.10.10.20.2-0.4-0.3-0.4
Na content in liver0.40.50.9-0.30.70.70.9
Rb content in liver1.82.12.61.6-1.4-1.4-1.4
Se content in liver0.00.00.00.00.1-0.0-0.0
Sr content in liver0.10.10.2-0.4-0.20.1-0.2
Zn content in liver0.20.30.30.6-0.5-0.4-0.6
Bone: minimum diameter4.99.510.2-3.23.13.03.0
Time in familiar zone, hab. session 10.40.50.7-0.80.60.80.5
Time in novel zone, hab. session 11.31.42.11.5-1.0-1.3-0.9
Total zone transitions, hab. session 10.10.20.3-0.40.50.30.4
Total locomotion distance, hab. session 12.23.24.0-2.01.91.71.5
Locomotion velocity, hab. session 12.12.93.6-1.91.81.71.4
Time in familiar zone, hab. session 20.00.00.10.3-0.2-0.2-0.1
Time in novel zone, hab. session 20.30.30.50.7-0.5-0.7-0.5
Total zone transitions, hab. session 20.10.10.2-0.40.20.30.2
Total locomotion distance, hab. session 21.01.31.6-1.31.11.11.0
Locomotion velocity, hab. session 21.11.41.8-1.31.11.21.1
Novel to familiar place preference ratio0.10.10.30.5-0.1-0.4-0.2
Novelty place preference0.30.40.91.0-0.4-0.7-0.4
Time in novel zone, NPP test0.20.30.70.8-0.2-0.6-0.3
Total zone transitions, NPP test0.00.00.00.10.10.10.2
Total locomotion distance, NPP test0.40.61.0-1.00.80.70.6
Locomotion velocity, NPP test0.20.20.5-0.70.50.50.3
Intraocular pressure0.71.11.31.2-1.1-1.0-1.0
Delta distance traveled before/after self-admin4.75.25.6-2.42.32.32.1
Delta ambulatory time before/after self-admin1.52.63.1-1.81.71.61.4
Parametrial fat weight0.81.92.5-1.31.61.31.4
Pavlov. Cond. lever latency0.50.61.00.7-1.0-0.7-0.7
Pavlov. Cond. magazine entry latency0.00.00.1-0.30.10.20.1
Pavlov. Cond. change in total contacts0.00.00.0-0.00.0-0.2-0.2
Pavlov. Cond. index score0.10.20.3-0.40.50.40.3
Pavlov. Cond. latency score0.20.30.4-0.50.60.50.4
Pavlov. Cond. lever contacts0.40.50.7-0.70.90.60.6
Pavlov. Cond. magazine entry number0.00.00.00.10.0-0.10.1
Pavlov. Cond. intertrial magazine entries0.00.00.00.20.20.00.2
Pavlov. Cond. lever-magazine prob. diff.0.20.30.4-0.50.60.50.4
Pavlov. Cond. response bias0.20.20.3-0.50.60.50.4
Pavlov. Cond. lever latency0.00.00.10.3-0.0-0.2-0.0
Pavlov. Cond. magazine entry latency0.50.70.90.6-1.0-0.8-0.9
Pavlov. Cond. change in total contacts0.00.00.1-0.1-0.3-0.0-0.3
Pavlov. Cond. index score0.10.10.2-0.1-0.4-0.2-0.4
Pavlov. Cond. latency score0.20.20.40.1-0.6-0.4-0.6
Pavlov. Cond. lever contacts0.10.20.3-0.60.40.40.3
Pavlov. Cond. magazine entry number0.91.21.6-0.81.31.01.2
Pavlov. Cond. intertrial magazine entries0.81.72.2-1.11.51.21.4
Pavlov. Cond. lever-magazine prob. diff.0.10.10.2-0.0-0.4-0.2-0.4
Pavlov. Cond. response bias0.00.00.1-0.0-0.2-0.1-0.3
Time in closed arm before self-admin0.10.20.3-0.50.60.40.2
Time in closed arm after self-admin0.10.10.30.1-0.5-0.2-0.3
Time in open arm before self-admin0.10.20.4-0.5-0.20.1-0.6
Time in open arm after self-admin0.60.71.2-0.41.10.70.9
Bone: periosteal estimation0.71.61.7-1.31.21.31.3
Bone: periosteal perimeter0.30.60.8-0.70.60.80.9
Bone: post-yield work0.00.00.00.10.10.00.1
Progressive ratio test 1 active lever presses0.00.00.1-0.30.0-0.1-0.2
Progressive ratio test 1 breakpoint0.00.10.2-0.40.20.0-0.0
Progressive ratio test 1 inactive lever presses1.53.84.3-1.92.11.72.0
Progressive ratio test 2 active lever presses0.00.00.0-0.1-0.0-0.10.0
Progressive ratio test 2 breakpoint0.00.00.0-0.2-0.0-0.1-0.0
Progressive ratio test 2 inactive lever presses0.61.82.1-1.41.31.21.5
Incentive Sensitization - Responses0.10.20.30.5-0.5-0.4-0.2
Incentive Sensitization - Breakpoint0.10.10.20.4-0.5-0.4-0.2
Sum of active levers in priming session hrs 5-60.60.50.8-0.70.60.70.9
Progressive ratio0.00.00.1-0.30.10.2-0.1
Food seeking constrained by brief footshock0.10.20.30.4-0.2-0.5-0.4
Seeking ratio, punishment vs. effort0.10.20.40.00.50.10.6
Retroperitoneal fat weight0.00.00.00.10.10.00.1
Reaction time number correct0.00.00.1-0.10.00.40.2
Reaction time mean minus median0.21.11.71.3-0.9-1.1-0.8
Reaction time mean minus median AUC0.21.52.81.7-1.0-1.2-0.8
Reaction time num false alarms0.00.00.10.20.1-0.40.1
Reaction time num false alarms AUC0.10.20.50.5-0.2-0.7-0.2
Reaction time trials correct on left0.00.00.1-0.10.00.40.2
Reaction time trials on left0.00.00.1-0.1-0.10.30.1
Reaction time mean0.61.32.01.4-1.0-1.3-0.8
Reaction time mean AUC0.51.32.01.4-1.0-1.2-0.8
Median of all reaction times0.71.01.41.2-0.9-1.1-0.7
Reaction time omissions0.91.51.61.2-1.2-1.2-1.3
Reaction time false alarm rate0.20.30.70.5-0.2-0.8-0.3
Reaction time premature initiation rate0.10.20.3-0.20.60.20.5
Reaction time premature initiations0.10.20.4-0.20.60.30.6
Std. dev. reaction times0.31.11.51.2-0.9-1.1-0.9
Reaction time trials completed0.00.00.1-0.1-0.10.30.1
Reaction time trials AUC0.00.00.00.1-0.20.2-0.0
Run reversals in cocaine runway, females1.61.82.3-1.51.51.31.1
Run reversals in cocaine runway, males0.10.10.30.3-0.4-0.1-0.5
Latency to leave start box in cocaine runway1.72.43.0-1.21.71.51.7
Latency to leave start box in cocaine runway, F3.64.45.4-1.82.32.12.2
Latency to leave start box in cocaine runway, M0.10.10.2-0.10.20.20.4
Std. dev. time between licks in bursts0.61.21.60.7-1.2-1.1-1.3
Total sessions with >9 infusions1.31.61.91.2-1.3-1.4-1.2
Short access day 1 total inactive lever presses1.12.12.8-1.51.11.51.7
Short access day 10 total inactive lever presses0.42.83.0-1.71.51.71.7
Short access day 1 total infusions0.10.30.4-0.50.50.40.7
Short access day 10 total infusions0.00.00.1-0.0-0.1-0.3-0.1
Short access total infusions0.20.20.30.5-0.6-0.5-0.3
Short access day 1 locomotion0.00.00.0-0.1-0.1-0.1-0.1
Short access day 10 total locomotion0.00.00.10.2-0.1-0.3-0.2
Short access total locomotion0.20.30.40.4-0.5-0.6-0.6
One hour access (0.3 mA shock)0.20.30.3-0.60.50.50.6
Compulsive drug intake0.50.71.1-0.50.80.91.1
One hour access (shock baseline)0.00.10.20.0-0.2-0.4-0.4
Social response proportion1.21.52.2-0.61.41.21.5
Social responses0.60.81.0-0.50.91.01.0
Social time0.30.50.6-0.40.80.70.8
Soleus weight0.10.20.5-0.2-0.7-0.1-0.3
Bone: stiffness0.20.30.6-0.30.60.60.8
Tibialis anterior weight4.013.916.33.6-4.0-3.7-3.5
Time to tail flick, vehicle, before self-admin1.01.21.5-1.21.21.20.8
Time to tail flick, vehicle, after self-admin1.12.33.2-1.81.31.81.1
Time to tail flick, test, before self-admin0.10.10.1-0.3-0.20.0-0.4
Time to tail flick, test, after self-admin1.11.21.5-1.11.21.01.0
Delta time to tail flick, vehicle, before/after SA0.00.10.1-0.30.20.30.1
Delta time to tail flick, test, before/after SA0.40.50.9-0.30.80.60.9
Tibia length0.00.00.1-0.30.30.10.1
Ambulatory time before self-admin0.00.00.1-0.2-0.00.30.1
Ambulatory time after self-admin4.16.57.4-2.62.42.72.5
Bone: tissue strength0.70.70.9-1.00.80.80.8
Total heroin consumption0.60.71.2-1.10.71.00.5
Bone: trabecular number0.00.10.20.4-0.1-0.30.0
Bone: trabecular spacing0.30.40.70.8-0.5-0.7-0.4
Bone: trabecular thickness0.40.50.6-0.80.60.70.7
Bone: trabecular tissue density0.91.51.71.3-1.2-1.2-1.2
Water consumed over 24 hours1.02.02.2-1.31.41.51.4
Number of responses in last shaping day0.20.20.40.6-0.4-0.6-0.2