Ugt2b

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver intron excision ratio chr14_20989813_20990844 0.18 0.1 3.9e-16 0.13 0.12 0.13 0.14 3.8e-14 4.7e-13 2.7e-14 1.9e-15
2 Liver gene expression Ugt2b 0.85 0.04 0.0e+00 0.58 0.52 0.65 0.66 3.7e-78 2.3e-67 2.5e-94 1.5e-96
3 Adipose gene expression Ugt2b 0.14 0.11 2.1e-10 0.08 0.07 0.1 0.08 4.0e-09 1.3e-08 6.4e-11 1.3e-09

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.00.00.1-0.20.3-0.0
Area under the delay curve0.00.00.1-0.20.2-0.0
BMI with tail1.96.68.5-2.62.92.2
BMI without tail1.75.16.4-2.32.51.9
Body weight0.21.11.5-1.01.20.9
Weight adjusted by age0.40.61.1-1.10.70.2
Bone surface0.00.10.10.2-0.3-0.3
Bone volume0.30.50.50.7-0.7-0.7
Breakpoint value in progressive ratio session0.10.10.20.4-0.30.1
Number of licking bursts0.10.20.2-0.40.40.3
Context. condit. distance diff. score0.81.01.80.9-1.3-0.7
Locomotion velocity, session 11.31.41.8-1.11.31.0
Locomotion distance, session 10.20.30.40.6-0.6-0.2
Locomotion velocity, session 20.00.00.10.2-0.3-0.1
Locomotion distance, session 20.10.10.20.4-0.4-0.2
Locomotion velocity, session 30.60.70.91.0-0.9-0.7
Locomotion distance, session 30.10.10.20.3-0.4-0.3
Stereotopy head waving bouts, day 30.91.01.2-1.11.10.9
Stereotopy head waving duration, day 30.20.30.3-0.50.50.5
Locomotion velocity, session 72.02.12.51.6-1.5-1.3
Locomotion distance, session 71.52.02.31.5-1.5-1.1
Stereotopy head waving bouts, day 70.40.40.5-0.70.60.5
Stereotopy head waving duration, day 70.60.70.9-0.91.00.6
Locomotion velocity, session 80.10.10.20.2-0.4-0.1
Locomotion distance, session 81.31.93.01.3-1.7-0.9
Degree of sensitization distance1.21.21.41.2-1.2-0.9
Degree of sensitization stereotypy0.00.00.0-0.10.00.0
Conditioned locomotion0.20.20.4-0.40.30.6
Cocaine response after cond. corrected0.60.80.91.0-0.9-0.8
Cocaine response after cond. not corrected0.80.91.01.0-1.0-0.8
Cocaine response before conditioning0.00.00.1-0.20.20.1
Saline control response0.71.01.31.0-1.1-0.8
Bone: connectivity density0.20.30.4-0.50.70.5
Bone: cortical apparent density0.30.50.9-0.40.90.6
Bone: cortical area0.20.20.40.4-0.4-0.7
Bone: cortical porosity0.60.61.0-1.00.70.6
Bone: cortical porosity2.02.23.2-1.81.51.0
Bone: cortical thickness0.30.40.6-0.80.80.2
Bone: cortical thickness0.50.60.70.7-0.8-0.8
Bone: cortical tissue density0.40.61.0-0.51.00.6
Condit. Reinf. active minus inactive responses0.70.81.1-1.01.00.6
Condit. Reinf. active-inactive response ratio2.22.33.6-1.91.51.0
Condit. Reinf. active responses0.00.00.00.00.10.1
Condit. Reinf. inactive responses1.31.62.71.6-1.3-0.8
Incentive salience index mean0.10.10.1-0.40.30.1
Condit. Reinf. lever presses0.00.00.00.0-0.0-0.1
Condit. Reinf. active minus inactive responses0.10.10.20.4-0.3-0.2
Condit. Reinf. active-inactive response ratio0.10.20.30.5-0.4-0.3
Condit. Reinf. active responses0.20.20.30.6-0.6-0.3
Condit. Reinf. inactive responses0.40.60.90.8-0.9-0.5
Condit. Reinf. lever presses1.11.52.01.3-1.4-0.9
Condit. Reinf. lever reinforcers received0.40.50.70.8-0.8-0.5
Conditioned reinforcement - actives0.00.00.1-0.0-0.10.3
Conditioned reinforcement - inactives0.61.01.30.9-0.8-1.2
Conditioned locomotion0.10.10.20.3-0.20.4
Patch foraging indifference point 0 sec0.20.30.60.8-0.6-0.1
Patch foraging indifference point AUC1.92.83.81.9-1.6-1.4
Delay disc. indifference point, 0s delay0.10.10.1-0.30.30.2
Delay disc. indifference point, 16s delay0.91.01.6-1.11.20.5
Delay disc. indifference point, 2s delay2.12.33.31.8-1.8-0.8
Delay disc. indifference point, 24s delay0.00.00.0-0.20.10.2
Delay disc. indifference point, 4s delay0.10.10.20.2-0.0-0.5
Delay disc. indifference point, 8s delay1.21.41.9-1.41.30.8
Indifference point function ln k0.81.41.9-1.41.11.1
Indifference point function log k0.81.41.9-1.41.11.1
Patch foraging total patch changes 0 sec0.20.40.80.9-0.7-0.2
Patch foraging total patch changes 12 sec0.20.30.50.7-0.50.1
Patch foraging total patch changes 18 sec0.20.30.50.7-0.5-0.4
Patch foraging total patch changes 24 sec0.71.21.91.4-1.2-0.6
Patch foraging total patch changes 6 sec1.21.82.71.6-1.3-1.0
Patch foraging time to switch 0 sec2.65.46.9-2.62.51.7
Patch foraging water rate 0 sec0.91.82.61.6-1.5-0.7
Patch foraging water rate 12 sec0.51.01.31.0-1.1-0.8
Patch foraging water rate 18 sec1.62.43.41.7-1.8-1.0
Patch foraging water rate 24 sec1.92.64.21.7-2.1-0.9
Patch foraging water rate 6 sec0.60.91.11.0-1.1-0.8
Seeking ratio, delayed vs. immediate footshock1.31.62.31.0-1.2-1.5
Distance traveled before self-admin0.00.10.1-0.1-0.20.3
Distance traveled after self-admin5.46.68.42.5-2.9-2.3
Extensor digitorum longus weight8.131.841.7-6.55.94.3
Bone: elastic displacement0.00.00.0-0.2-0.20.1
Bone: elastic work0.10.10.30.1-0.5-0.3
Bone: endosteal estimation1.43.13.71.8-1.9-1.5
Bone: endosteal perimeter0.30.70.80.8-0.9-0.8
Epididymis fat weight0.30.91.3-0.71.11.0
Delta time in closed arm before/after self-admin1.11.01.3-1.21.00.8
Delta time in open arm before/after self-admin0.20.20.50.7-0.3-0.3
Diff in mean of infusions in LGA sessions0.00.00.0-0.1-0.10.1
Delay discount exponential model param0.00.00.00.1-0.10.1
Extinction: sum of active levers before priming0.10.10.10.2-0.30.3
Active lever presses in extinction session 60.30.30.50.7-0.6-0.0
Bone: final force0.00.00.10.1-0.1-0.4
Bone: final moment0.00.00.10.0-0.1-0.3
Food consumed during 24 hour testing period2.73.74.52.1-2.1-1.5
Glucose0.50.81.21.1-1.0-0.5
Heart weight0.71.11.4-1.21.00.9
Delay discount hyperbolic model param0.10.10.1-0.20.20.3
Intermittent access intake day 1-15 change0.20.40.6-0.70.60.5
Intermittent access intake escalation0.30.71.0-1.00.80.6
Intermittent access intake escalation 20.30.30.60.3-0.4-0.8
Intermitt. access day 1 inactive lever presses0.93.54.12.0-2.0-1.6
Intermitt. access day 15 inactive lever presses1.63.34.32.1-2.0-1.3
Intermitt. access escalation Index0.40.60.9-0.90.80.3
Intermittent access day 1 total infusions0.00.10.10.3-0.3-0.1
Intermittent access day 15 total infusions0.00.00.10.1-0.3-0.2
Intermittent access terminal intake (last 3 days)0.70.91.10.9-1.1-0.9
Intermittent access total infusions0.20.20.20.4-0.5-0.4
Intermittent access day 1 locomotion0.30.30.50.7-0.7-0.1
Intermittent access day 15 total locomotion0.00.00.10.1-0.00.4
Intermittent access total locomotion0.20.30.7-0.20.30.8
Intermittent access standard deviation0.81.62.01.1-1.3-1.4
Left kidney weight0.00.00.0-0.0-0.0-0.0
Right kidney weight0.00.00.10.10.10.3
Cocaine induced anxiety0.20.20.5-0.50.70.2
Post-drug Anxiety0.10.10.2-0.10.4-0.1
Baseline Anxiety0.80.91.30.7-1.2-1.0
Tail length0.51.82.11.3-1.4-1.2
Length with tail0.41.92.41.3-1.5-1.3
Length without tail0.20.81.10.9-1.1-0.7
Times rat made contact with spout0.10.10.10.3-0.2-0.1
Lifetime Intake0.00.00.0-0.1-0.00.1
Liver weight, left0.20.40.90.9-0.5-0.3
Liver weight, right1.01.72.51.6-1.4-0.9
Locomotor activity0.61.01.61.1-1.3-0.4
Locomotor testing distance0.30.61.00.8-1.0-0.2
Locomotor testing rearing0.20.40.70.6-0.8-0.5
Locomotion in novel chamber0.10.10.20.0-0.10.5
Locomotion in novel chamber post-restriction0.00.00.10.3-0.10.0
Fecal boli incidents, locomotor time 10.60.91.3-1.21.00.6
Change in fecal boli incidents, locomotor task0.20.20.3-0.20.40.6
Time >=10cm from walls, locomotor time 10.80.81.4-1.21.1-0.0
Bouts of movement, locomotor time 11.01.21.8-1.21.30.6
Total resting periods, locomotor time 10.70.81.4-0.91.20.5
Rest time, locomotor task time 10.81.01.41.1-1.2-0.6
Distance moved, locomotor task time 10.20.20.4-0.60.40.4
Vertical activity count, locomotor time 10.10.10.2-0.20.30.5
Time >=10cm from walls, locomotor time 20.10.10.3-0.10.1-0.5
Bouts of movement, locomotor time 20.00.00.00.1-0.2-0.2
Total resting periods, locomotor time 20.00.00.0-0.0-0.0-0.0
Rest time, locomotor task time 20.70.81.40.9-1.2-0.5
Distance moved, locomotor task time 21.21.41.6-1.31.21.0
Vertical activity count, locomotor time 20.10.20.3-0.30.40.6
Light reinforcement 10.41.01.51.2-1.0-0.7
Light reinforcement 20.00.00.0-0.10.1-0.1
Bone: marrow area1.43.03.71.8-1.9-1.4
Bone: maximum diameter0.00.10.1-0.30.3-0.0
Bone: maximum force0.20.30.50.4-0.5-0.7
Bone: maximum moment0.20.30.40.5-0.6-0.6
Mean time between licks in bursts2.05.06.5-2.62.31.7
Mean num. licks in bursts0.40.70.91.0-0.9-0.6
Cd content in liver3.64.05.7-2.42.21.2
Co content in liver0.20.20.5-0.30.40.7
Cu content in liver0.00.00.00.2-0.2-0.1
Fe content in liver0.50.61.0-0.81.00.6
K content in liver0.20.20.30.6-0.4-0.5
Mg content in liver0.00.00.00.2-0.0-0.0
Mn content in liver0.10.10.1-0.40.20.0
Na content in liver0.30.40.50.7-0.5-0.6
Rb content in liver1.82.12.5-1.41.61.3
Se content in liver0.00.00.00.1-0.0-0.0
Sr content in liver0.10.10.1-0.2-0.3-0.3
Zn content in liver0.30.30.3-0.50.60.6
Bone: minimum diameter4.98.910.43.1-3.2-2.6
Time in familiar zone, hab. session 10.30.30.50.6-0.7-0.4
Time in novel zone, hab. session 11.01.01.6-1.01.30.6
Total zone transitions, hab. session 10.20.20.30.5-0.5-0.4
Total locomotion distance, hab. session 12.23.14.01.9-2.0-1.3
Locomotion velocity, hab. session 11.92.73.51.8-1.9-1.2
Time in familiar zone, hab. session 20.00.00.1-0.20.20.1
Time in novel zone, hab. session 20.20.20.4-0.50.60.3
Total zone transitions, hab. session 20.10.10.10.2-0.4-0.3
Total locomotion distance, hab. session 21.01.31.71.1-1.3-1.0
Locomotion velocity, hab. session 21.01.41.81.1-1.4-1.0
Novel to familiar place preference ratio0.10.10.1-0.10.40.4
Novelty place preference0.30.40.6-0.40.80.6
Time in novel zone, NPP test0.20.20.4-0.20.60.5
Total zone transitions, NPP test0.00.00.00.1-0.0-0.0
Total locomotion distance, NPP test0.50.61.00.8-1.0-0.6
Locomotion velocity, NPP test0.20.30.50.5-0.7-0.3
Intraocular pressure0.71.01.2-1.11.10.8
Delta distance traveled before/after self-admin4.54.75.42.3-2.2-2.0
Delta ambulatory time before/after self-admin2.22.72.71.7-1.6-1.6
Parametrial fat weight0.71.62.51.6-1.4-0.4
Pavlov. Cond. lever latency0.50.61.0-1.00.80.5
Pavlov. Cond. magazine entry latency0.00.00.10.1-0.2-0.1
Pavlov. Cond. change in total contacts0.00.00.00.0-0.0-0.1
Pavlov. Cond. index score0.10.20.30.5-0.4-0.2
Pavlov. Cond. latency score0.20.30.40.6-0.5-0.3
Pavlov. Cond. lever contacts0.40.50.70.9-0.7-0.4
Pavlov. Cond. magazine entry number0.00.00.00.00.1-0.1
Pavlov. Cond. intertrial magazine entries0.00.00.00.20.10.1
Pavlov. Cond. lever-magazine prob. diff.0.20.30.40.6-0.5-0.2
Pavlov. Cond. response bias0.20.20.30.6-0.5-0.3
Pavlov. Cond. lever latency0.00.00.1-0.00.30.2
Pavlov. Cond. magazine entry latency0.40.50.9-1.00.60.3
Pavlov. Cond. change in total contacts0.00.00.1-0.3-0.0-0.1
Pavlov. Cond. index score0.00.10.2-0.40.00.0
Pavlov. Cond. latency score0.10.20.4-0.60.20.1
Pavlov. Cond. lever contacts0.10.20.30.4-0.5-0.4
Pavlov. Cond. magazine entry number0.70.81.61.3-0.9-0.4
Pavlov. Cond. intertrial magazine entries0.91.42.21.5-1.3-0.7
Pavlov. Cond. lever-magazine prob. diff.0.00.10.2-0.40.10.0
Pavlov. Cond. response bias0.00.00.1-0.2-0.0-0.0
Time in closed arm before self-admin0.10.20.30.6-0.4-0.1
Time in closed arm after self-admin0.10.10.3-0.50.30.3
Time in open arm before self-admin0.20.20.7-0.2-0.20.8
Time in open arm after self-admin0.60.61.21.1-0.7-0.5
Bone: periosteal estimation0.71.41.51.2-1.2-1.1
Bone: periosteal perimeter0.20.40.40.6-0.6-0.7
Bone: post-yield work0.00.00.00.10.1-0.2
Progressive ratio test 1 active lever presses0.00.00.10.0-0.10.3
Progressive ratio test 1 breakpoint0.00.00.10.2-0.30.1
Progressive ratio test 1 inactive lever presses2.43.44.32.1-2.0-1.4
Progressive ratio test 2 active lever presses0.00.00.0-0.0-0.0-0.2
Progressive ratio test 2 breakpoint0.00.00.0-0.0-0.1-0.2
Progressive ratio test 2 inactive lever presses1.01.61.81.3-1.3-1.1
Incentive Sensitization - Responses0.10.20.3-0.50.5-0.1
Incentive Sensitization - Breakpoint0.10.10.2-0.50.4-0.2
Sum of active levers in priming session hrs 5-60.40.40.50.6-0.7-0.5
Progressive ratio0.00.10.20.1-0.20.4
Food seeking constrained by brief footshock0.10.10.2-0.20.40.3
Seeking ratio, punishment vs. effort0.20.30.60.5-0.2-0.7
Retroperitoneal fat weight0.00.10.40.10.10.6
Reaction time number correct0.00.10.20.0-0.1-0.4
Reaction time mean minus median0.30.81.4-0.91.20.3
Reaction time mean minus median AUC0.41.12.1-1.01.40.3
Reaction time num false alarms0.00.00.10.10.10.3
Reaction time num false alarms AUC0.10.20.3-0.20.40.6
Reaction time trials correct on left0.00.10.20.0-0.1-0.4
Reaction time trials on left0.00.10.2-0.1-0.0-0.4
Reaction time mean0.60.91.6-1.01.20.2
Reaction time mean AUC0.50.81.5-1.01.20.3
Median of all reaction times0.50.71.2-0.91.10.2
Reaction time omissions0.91.31.6-1.21.30.8
Reaction time false alarm rate0.20.30.6-0.20.40.8
Reaction time premature initiation rate0.10.20.30.6-0.4-0.2
Reaction time premature initiations0.10.20.30.6-0.4-0.4
Std. dev. reaction times0.40.71.3-0.91.10.2
Reaction time trials completed0.00.10.2-0.1-0.0-0.4
Reaction time trials AUC0.00.00.1-0.20.1-0.3
Run reversals in cocaine runway, females1.81.82.21.5-1.4-1.1
Run reversals in cocaine runway, males0.40.51.0-0.40.31.0
Latency to leave start box in cocaine runway2.52.93.51.7-1.5-1.9
Latency to leave start box in cocaine runway, F3.84.35.42.3-2.1-1.9
Latency to leave start box in cocaine runway, M0.40.41.00.2-0.2-1.0
Std. dev. time between licks in bursts0.71.01.4-1.20.90.9
Total sessions with >9 infusions1.61.92.5-1.31.31.6
Short access day 1 total inactive lever presses1.41.92.31.1-1.5-1.4
Short access day 10 total inactive lever presses1.23.03.61.5-1.8-1.9
Short access day 1 total infusions0.20.20.30.5-0.5-0.3
Short access day 10 total infusions0.00.00.0-0.10.0-0.2
Short access total infusions0.20.30.4-0.60.50.6
Short access day 1 locomotion0.00.00.1-0.10.10.2
Short access day 10 total locomotion0.00.00.1-0.10.20.3
Short access total locomotion0.30.40.6-0.50.50.8
One hour access (0.3 mA shock)0.20.20.30.5-0.5-0.3
Compulsive drug intake0.70.81.30.8-0.7-1.1
One hour access (shock baseline)0.10.20.5-0.20.20.7
Social response proportion1.21.32.01.4-1.0-1.0
Social responses0.40.50.80.9-0.6-0.4
Social time0.30.50.60.8-0.5-0.7
Soleus weight0.10.20.5-0.70.1-0.0
Bone: stiffness0.20.30.50.6-0.4-0.7
Tibialis anterior weight3.511.816.3-4.03.72.3
Time to tail flick, vehicle, before self-admin1.11.21.41.2-1.2-0.8
Time to tail flick, vehicle, after self-admin1.11.42.41.3-1.5-0.4
Time to tail flick, test, before self-admin0.00.00.1-0.2-0.20.1
Time to tail flick, test, after self-admin0.90.91.51.2-1.0-0.5
Delta time to tail flick, vehicle, before/after SA0.00.00.10.2-0.20.3
Delta time to tail flick, test, before/after SA0.30.30.70.8-0.4-0.4
Tibia length0.00.10.10.3-0.3-0.4
Ambulatory time before self-admin0.00.00.1-0.0-0.20.3
Ambulatory time after self-admin4.45.26.82.4-2.6-1.7
Bone: tissue strength0.70.70.80.8-0.9-0.8
Total heroin consumption0.40.50.90.7-0.9-0.1
Bone: trabecular number0.00.00.1-0.10.20.0
Bone: trabecular spacing0.20.30.5-0.50.70.5
Bone: trabecular thickness0.40.40.50.6-0.7-0.7
Bone: trabecular tissue density0.91.41.7-1.21.31.0
Water consumed over 24 hours1.11.42.01.4-1.3-0.7
Number of responses in last shaping day0.30.30.4-0.40.60.5