Ubxn2a

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 BLA intron excision ratio chr6_27887989_27893164 0.06 0.04 2.3e-03 0.04 0.05 0.05 0.05 3.4e-03 1.7e-03 8.6e-04 9.3e-04
2 BLA intron excision ratio chr6_27893322_27894997 0.05 0.04 5.0e-03 0.03 0.04 0.05 0.04 6.8e-03 4.3e-03 1.6e-03 2.8e-03
3 PL gene expression Ubxn2a 0.12 0.07 1.1e-03 -0 0.01 0.02 0 7.1e-01 7.3e-03 3.5e-03 1.6e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density5.99.813.0-3.63.61.9
Area under the delay curve0.10.10.20.1-0.10.4
BMI with tail2.06.49.53.1-3.10.5
BMI without tail2.04.26.22.5-2.50.5
Body weight1.97.810.93.3-3.31.2
Weight adjusted by age0.10.10.20.4-0.40.1
Bone surface1.72.93.9-2.02.01.0
Bone volume3.55.98.2-2.92.81.2
Breakpoint value in progressive ratio session2.52.83.6-1.91.91.1
Number of licking bursts1.41.62.31.5-1.50.6
Context. condit. distance diff. score1.62.02.5-1.61.61.0
Locomotion velocity, session 10.80.81.20.8-0.81.1
Locomotion distance, session 10.10.10.1-0.40.40.2
Locomotion velocity, session 20.30.30.40.5-0.50.6
Locomotion distance, session 20.10.20.40.3-0.30.6
Locomotion velocity, session 30.20.20.2-0.50.50.4
Locomotion distance, session 30.20.20.3-0.60.60.3
Stereotopy head waving bouts, day 33.03.54.8-2.22.21.0
Stereotopy head waving duration, day 30.40.50.8-0.90.90.2
Locomotion velocity, session 70.30.40.8-0.40.40.9
Locomotion distance, session 70.40.51.20.4-0.41.1
Stereotopy head waving bouts, day 70.00.10.10.2-0.2-0.2
Stereotopy head waving duration, day 70.20.20.5-0.20.2-0.7
Locomotion velocity, session 81.72.02.6-1.61.60.9
Locomotion distance, session 82.02.94.3-2.12.10.6
Degree of sensitization distance1.11.11.11.0-1.01.0
Degree of sensitization stereotypy1.01.11.61.3-1.3-0.5
Conditioned locomotion3.33.95.7-2.42.40.7
Cocaine response after cond. corrected0.20.30.40.6-0.60.1
Cocaine response after cond. not corrected0.20.20.20.5-0.5-0.4
Cocaine response before conditioning1.11.32.6-0.80.8-1.6
Saline control response0.70.91.4-1.21.2-0.3
Bone: connectivity density3.04.65.6-2.42.41.6
Bone: cortical apparent density0.50.61.20.6-0.61.1
Bone: cortical area0.00.00.10.1-0.10.2
Bone: cortical porosity1.71.82.0-1.41.4-1.2
Bone: cortical porosity1.21.31.5-1.21.2-0.9
Bone: cortical thickness0.50.81.11.1-1.1-0.1
Bone: cortical thickness0.30.40.6-0.80.70.1
Bone: cortical tissue density0.60.81.50.6-0.61.2
Condit. Reinf. active minus inactive responses3.13.55.22.3-2.30.3
Condit. Reinf. active-inactive response ratio1.71.92.61.6-1.60.7
Condit. Reinf. active responses0.60.81.21.1-1.10.2
Condit. Reinf. inactive responses0.60.71.1-1.01.00.2
Incentive salience index mean1.21.42.11.5-1.50.2
Condit. Reinf. lever presses0.10.10.30.1-0.1-0.5
Condit. Reinf. active minus inactive responses0.20.20.3-0.50.5-0.4
Condit. Reinf. active-inactive response ratio0.30.31.0-0.00.0-1.0
Condit. Reinf. active responses0.10.10.30.2-0.2-0.5
Condit. Reinf. inactive responses0.10.10.10.3-0.30.3
Condit. Reinf. lever presses0.20.20.60.1-0.1-0.8
Condit. Reinf. lever reinforcers received0.10.10.10.4-0.4-0.4
Conditioned reinforcement - actives2.12.13.0-1.71.7-0.4
Conditioned reinforcement - inactives2.93.33.5-1.91.8-1.7
Conditioned locomotion1.41.71.8-1.41.3-1.2
Patch foraging indifference point 0 sec0.50.71.1-1.01.00.2
Patch foraging indifference point AUC0.10.10.1-0.40.4-0.3
Delay disc. indifference point, 0s delay1.01.11.51.2-1.2-0.7
Delay disc. indifference point, 16s delay0.10.10.1-0.20.20.3
Delay disc. indifference point, 2s delay0.40.40.50.7-0.7-0.3
Delay disc. indifference point, 24s delay3.73.54.2-2.12.01.5
Delay disc. indifference point, 4s delay0.10.10.20.2-0.2-0.4
Delay disc. indifference point, 8s delay0.30.41.0-0.20.21.0
Indifference point function ln k0.71.01.4-1.21.2-0.4
Indifference point function log k0.71.01.4-1.21.2-0.4
Patch foraging total patch changes 0 sec0.50.81.2-1.11.10.2
Patch foraging total patch changes 12 sec0.00.00.10.2-0.20.2
Patch foraging total patch changes 18 sec0.91.21.3-1.11.11.1
Patch foraging total patch changes 24 sec0.10.10.10.2-0.20.3
Patch foraging total patch changes 6 sec0.00.00.10.0-0.00.4
Patch foraging time to switch 0 sec0.71.01.31.0-0.91.1
Patch foraging water rate 0 sec2.23.55.1-2.22.2-0.7
Patch foraging water rate 12 sec0.40.60.70.8-0.8-0.8
Patch foraging water rate 18 sec2.02.87.1-0.80.8-2.7
Patch foraging water rate 24 sec0.10.10.1-0.30.30.3
Patch foraging water rate 6 sec0.50.71.9-0.20.2-1.4
Seeking ratio, delayed vs. immediate footshock0.81.01.11.1-1.0-0.8
Distance traveled before self-admin0.20.20.30.5-0.5-0.4
Distance traveled after self-admin0.10.10.2-0.30.3-0.4
Extensor digitorum longus weight0.72.94.3-2.12.10.3
Bone: elastic displacement0.80.91.3-1.11.10.2
Bone: elastic work0.71.01.5-1.21.20.0
Bone: endosteal estimation0.51.21.8-1.31.30.1
Bone: endosteal perimeter0.10.20.3-0.60.60.1
Epididymis fat weight8.519.927.95.3-5.32.0
Delta time in closed arm before/after self-admin0.10.00.1-0.20.2-0.3
Delta time in open arm before/after self-admin0.70.71.10.7-0.61.1
Diff in mean of infusions in LGA sessions0.30.41.0-0.20.21.0
Delay discount exponential model param0.10.20.30.2-0.2-0.6
Extinction: sum of active levers before priming0.40.40.6-0.80.8-0.1
Active lever presses in extinction session 60.10.10.2-0.40.4-0.2
Bone: final force0.20.30.60.4-0.4-0.8
Bone: final moment0.10.10.30.2-0.2-0.6
Food consumed during 24 hour testing period0.30.41.00.2-0.2-1.0
Glucose0.20.30.90.3-0.30.9
Heart weight2.73.95.82.4-2.4-0.2
Delay discount hyperbolic model param0.10.10.20.0-0.0-0.4
Intermittent access intake day 1-15 change1.61.52.3-1.51.5-0.1
Intermittent access intake escalation1.51.52.3-1.51.50.0
Intermittent access intake escalation 20.50.50.6-0.80.80.5
Intermitt. access day 1 inactive lever presses0.20.20.40.4-0.4-0.6
Intermitt. access day 15 inactive lever presses0.30.40.4-0.60.7-0.5
Intermitt. access escalation Index2.21.92.61.6-1.6-0.7
Intermittent access day 1 total infusions1.01.11.2-1.01.0-1.1
Intermittent access day 15 total infusions0.91.01.2-1.11.1-0.8
Intermittent access terminal intake (last 3 days)1.11.22.9-0.60.6-1.7
Intermittent access total infusions0.91.01.2-1.00.9-1.1
Intermittent access day 1 locomotion0.90.92.2-0.60.6-1.5
Intermittent access day 15 total locomotion0.40.41.20.1-0.1-1.1
Intermittent access total locomotion0.30.40.9-0.30.3-0.9
Intermittent access standard deviation0.10.10.2-0.20.2-0.5
Left kidney weight0.10.41.1-0.0-0.0-1.0
Right kidney weight0.30.81.01.0-1.0-0.5
Cocaine induced anxiety3.03.54.0-2.02.01.6
Post-drug Anxiety0.30.40.7-0.40.40.8
Baseline Anxiety2.72.93.81.9-1.9-1.0
Tail length0.00.00.0-0.00.0-0.0
Length with tail0.20.60.80.9-0.90.3
Length without tail0.00.10.1-0.10.1-0.4
Times rat made contact with spout1.71.92.9-1.71.70.1
Lifetime Intake0.91.11.2-1.01.0-1.1
Liver weight, left3.55.67.92.8-2.8-1.1
Liver weight, right2.74.56.82.6-2.6-0.1
Locomotor activity1.72.74.02.0-2.00.1
Locomotor testing distance1.11.92.41.6-1.60.8
Locomotor testing rearing0.20.30.50.7-0.7-0.2
Locomotion in novel chamber1.92.43.61.9-1.9-0.2
Locomotion in novel chamber post-restriction0.20.30.30.5-0.5-0.5
Fecal boli incidents, locomotor time 11.51.72.5-1.61.60.0
Change in fecal boli incidents, locomotor task1.31.21.41.2-1.2-0.9
Time >=10cm from walls, locomotor time 10.40.50.5-0.60.60.7
Bouts of movement, locomotor time 10.10.10.1-0.40.40.4
Total resting periods, locomotor time 10.60.70.7-0.80.80.8
Rest time, locomotor task time 10.20.30.5-0.40.40.7
Distance moved, locomotor task time 10.60.60.80.9-0.9-0.6
Vertical activity count, locomotor time 11.11.21.41.0-1.0-1.2
Time >=10cm from walls, locomotor time 21.71.82.4-1.51.60.7
Bouts of movement, locomotor time 20.10.10.30.1-0.10.6
Total resting periods, locomotor time 20.20.20.6-0.20.20.8
Rest time, locomotor task time 20.50.51.5-0.30.21.2
Distance moved, locomotor task time 21.01.12.70.6-0.6-1.6
Vertical activity count, locomotor time 20.30.30.80.1-0.1-0.9
Light reinforcement 10.00.00.10.1-0.1-0.3
Light reinforcement 21.01.31.4-1.11.1-1.2
Bone: marrow area0.51.11.6-1.31.30.1
Bone: maximum diameter0.40.71.1-1.01.00.1
Bone: maximum force0.10.20.60.1-0.1-0.8
Bone: maximum moment0.10.10.3-0.10.1-0.5
Mean time between licks in bursts0.60.91.10.9-0.91.0
Mean num. licks in bursts3.23.95.8-2.42.4-0.4
Cd content in liver0.00.00.0-0.20.20.0
Co content in liver1.51.84.0-0.80.8-2.0
Cu content in liver0.50.61.30.5-0.51.1
Fe content in liver1.31.62.3-1.51.50.5
K content in liver0.90.91.41.2-1.1-0.1
Mg content in liver0.40.40.60.7-0.70.3
Mn content in liver0.20.20.30.5-0.5-0.2
Na content in liver1.31.32.9-0.70.7-1.7
Rb content in liver0.00.00.0-0.10.10.1
Se content in liver0.30.40.50.7-0.70.4
Sr content in liver0.10.10.3-0.10.10.6
Zn content in liver3.64.05.92.4-2.4-0.4
Bone: minimum diameter0.40.71.01.0-1.00.2
Time in familiar zone, hab. session 11.21.11.61.3-1.30.4
Time in novel zone, hab. session 10.30.30.6-0.30.30.8
Total zone transitions, hab. session 10.20.30.4-0.60.6-0.3
Total locomotion distance, hab. session 10.30.40.8-0.50.5-0.9
Locomotion velocity, hab. session 10.81.12.7-0.60.5-1.6
Time in familiar zone, hab. session 20.30.30.80.2-0.20.9
Time in novel zone, hab. session 20.30.31.00.0-0.01.0
Total zone transitions, hab. session 20.40.50.7-0.90.90.3
Total locomotion distance, hab. session 20.30.40.6-0.80.80.2
Locomotion velocity, hab. session 20.30.50.7-0.80.8-0.0
Novel to familiar place preference ratio0.00.00.0-0.10.1-0.2
Novelty place preference0.10.10.20.4-0.4-0.3
Time in novel zone, NPP test0.10.10.10.2-0.20.3
Total zone transitions, NPP test0.50.81.2-1.11.10.1
Total locomotion distance, NPP test1.11.52.3-1.51.50.1
Locomotion velocity, NPP test1.11.62.2-1.51.5-0.6
Intraocular pressure1.52.12.81.3-1.31.7
Delta distance traveled before/after self-admin0.00.00.00.0-0.10.1
Delta ambulatory time before/after self-admin0.30.30.5-0.70.70.1
Parametrial fat weight12.223.835.56.0-6.00.6
Pavlov. Cond. lever latency0.10.10.10.3-0.3-0.1
Pavlov. Cond. magazine entry latency0.40.51.2-0.40.41.1
Pavlov. Cond. change in total contacts0.40.41.2-0.10.11.1
Pavlov. Cond. index score0.20.20.3-0.40.40.6
Pavlov. Cond. latency score0.30.40.6-0.60.60.8
Pavlov. Cond. lever contacts0.20.20.3-0.50.5-0.0
Pavlov. Cond. magazine entry number0.50.60.90.6-0.6-1.0
Pavlov. Cond. intertrial magazine entries0.70.91.3-1.11.10.1
Pavlov. Cond. lever-magazine prob. diff.0.40.50.6-0.80.80.3
Pavlov. Cond. response bias0.91.11.6-1.31.30.4
Pavlov. Cond. lever latency0.71.01.11.1-1.10.9
Pavlov. Cond. magazine entry latency0.00.10.1-0.30.3-0.2
Pavlov. Cond. change in total contacts0.10.10.1-0.30.3-0.3
Pavlov. Cond. index score0.50.71.0-0.80.8-1.0
Pavlov. Cond. latency score0.60.80.8-0.90.9-0.9
Pavlov. Cond. lever contacts0.30.40.9-0.40.4-0.9
Pavlov. Cond. magazine entry number0.00.00.00.1-0.1-0.2
Pavlov. Cond. intertrial magazine entries1.01.31.61.2-1.20.8
Pavlov. Cond. lever-magazine prob. diff.0.30.40.5-0.60.6-0.7
Pavlov. Cond. response bias0.40.50.6-0.80.8-0.6
Time in closed arm before self-admin0.00.00.0-0.10.10.1
Time in closed arm after self-admin1.41.42.11.0-1.0-1.5
Time in open arm before self-admin0.50.60.70.7-0.7-0.8
Time in open arm after self-admin0.60.61.9-0.00.01.4
Bone: periosteal estimation0.30.71.0-1.01.00.2
Bone: periosteal perimeter0.10.10.2-0.40.4-0.2
Bone: post-yield work1.21.72.5-1.61.6-0.1
Progressive ratio test 1 active lever presses0.70.81.9-0.50.4-1.4
Progressive ratio test 1 breakpoint0.70.81.7-0.60.5-1.3
Progressive ratio test 1 inactive lever presses1.31.41.9-1.11.1-1.4
Progressive ratio test 2 active lever presses0.70.81.1-1.11.0-0.4
Progressive ratio test 2 breakpoint0.91.01.4-1.21.2-0.4
Progressive ratio test 2 inactive lever presses1.41.61.9-1.41.4-1.1
Incentive Sensitization - Responses0.20.20.2-0.50.50.4
Incentive Sensitization - Breakpoint0.00.10.1-0.20.20.3
Sum of active levers in priming session hrs 5-60.70.70.7-0.80.80.9
Progressive ratio0.00.00.10.1-0.0-0.3
Food seeking constrained by brief footshock5.06.29.3-3.03.0-0.1
Seeking ratio, punishment vs. effort1.01.31.9-1.41.40.0
Retroperitoneal fat weight20.467.197.59.9-9.92.6
Reaction time number correct0.20.30.3-0.50.60.5
Reaction time mean minus median2.63.56.51.4-1.42.6
Reaction time mean minus median AUC2.22.83.71.5-1.51.9
Reaction time num false alarms0.50.71.10.7-0.71.0
Reaction time num false alarms AUC0.60.80.90.9-0.90.9
Reaction time trials correct on left0.20.30.3-0.50.60.5
Reaction time trials on left0.20.30.5-0.40.40.7
Reaction time mean1.72.45.80.8-0.82.4
Reaction time mean AUC1.41.94.50.8-0.82.1
Median of all reaction times1.11.54.10.4-0.42.0
Reaction time omissions2.73.78.91.1-1.13.0
Reaction time false alarm rate0.71.01.51.2-1.20.2
Reaction time premature initiation rate0.30.50.6-0.80.8-0.5
Reaction time premature initiations0.60.81.2-1.11.10.1
Std. dev. reaction times2.94.19.11.3-1.33.0
Reaction time trials completed0.20.30.5-0.40.40.7
Reaction time trials AUC0.20.20.5-0.30.30.7
Run reversals in cocaine runway, females0.70.70.8-0.90.9-0.7
Run reversals in cocaine runway, males0.70.71.9-0.30.3-1.4
Latency to leave start box in cocaine runway3.53.73.9-1.92.01.9
Latency to leave start box in cocaine runway, F1.31.51.8-1.31.30.9
Latency to leave start box in cocaine runway, M3.33.13.5-1.91.91.5
Std. dev. time between licks in bursts0.30.31.0-0.10.11.0
Total sessions with >9 infusions1.51.64.0-0.70.7-2.0
Short access day 1 total inactive lever presses1.01.21.2-1.11.1-1.1
Short access day 10 total inactive lever presses0.70.82.1-0.30.31.5
Short access day 1 total infusions0.70.81.1-1.01.0-0.3
Short access day 10 total infusions1.01.11.2-1.01.0-1.1
Short access total infusions1.01.11.3-1.21.1-0.9
Short access day 1 locomotion0.90.91.4-1.21.2-0.3
Short access day 10 total locomotion0.30.30.5-0.70.70.1
Short access total locomotion0.80.91.0-1.01.0-0.8
One hour access (0.3 mA shock)2.83.34.8-2.22.20.5
Compulsive drug intake0.50.51.3-0.10.11.2
One hour access (shock baseline)1.31.52.0-1.41.4-0.6
Social response proportion0.50.51.40.3-0.3-1.2
Social responses0.10.10.20.4-0.40.4
Social time0.50.60.70.8-0.8-0.8
Soleus weight2.26.69.8-3.13.1-0.4
Bone: stiffness0.40.71.80.4-0.4-1.4
Tibialis anterior weight0.51.72.5-1.61.60.2
Time to tail flick, vehicle, before self-admin1.81.92.71.6-1.70.4
Time to tail flick, vehicle, after self-admin2.42.63.61.9-1.90.8
Time to tail flick, test, before self-admin0.70.70.9-0.90.9-0.7
Time to tail flick, test, after self-admin0.20.20.3-0.40.4-0.6
Delta time to tail flick, vehicle, before/after SA0.10.10.40.1-0.10.6
Delta time to tail flick, test, before/after SA0.60.50.7-0.80.8-0.4
Tibia length1.13.14.62.1-2.1-0.3
Ambulatory time before self-admin0.50.50.60.8-0.8-0.5
Ambulatory time after self-admin0.10.10.40.1-0.1-0.6
Bone: tissue strength0.80.81.21.1-1.1-0.1
Total heroin consumption1.31.62.3-1.51.50.5
Bone: trabecular number4.26.59.0-3.03.01.3
Bone: trabecular spacing2.83.64.42.1-2.1-1.4
Bone: trabecular thickness3.64.35.6-1.91.92.4
Bone: trabecular tissue density0.10.20.2-0.50.5-0.4
Water consumed over 24 hours0.91.11.2-1.11.11.0
Number of responses in last shaping day1.01.01.5-1.21.20.2