Ube2z

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression Ube2z 0.04 0.04 1.6e-05 0.03 0.04 0.03 0.03 1.3e-04 7.0e-05 2.2e-04 1.6e-04
2 Liver mRNA stability Ube2z 0.03 0.02 1.6e-04 0.02 0.03 0.02 0.02 1.4e-03 3.2e-04 9.2e-04 1.1e-03
3 BLA gene expression Ube2z 0.06 0.05 2.8e-03 0.02 0.04 0.04 0.03 2.4e-02 2.7e-03 4.0e-03 6.7e-03
4 PL gene expression Ube2z 0.04 0.03 3.6e-05 0.03 0.03 0.02 0.04 1.4e-04 2.3e-04 2.0e-03 8.4e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.11.92.31.51.4-1.5-1.1
Area under the delay curve0.00.00.1-0.2-0.20.2-0.1
BMI with tail16.453.165.88.17.7-7.3-5.8
BMI without tail0.81.72.61.61.4-1.3-0.6
Body weight0.93.84.02.01.9-2.0-1.8
Weight adjusted by age0.10.20.3-0.5-0.40.4-0.0
Bone surface0.30.60.70.80.7-0.9-0.8
Bone volume1.01.72.01.31.2-1.4-1.3
Breakpoint value in progressive ratio session3.03.33.7-1.9-1.81.91.7
Number of licking bursts0.91.01.7-0.8-1.01.01.3
Context. condit. distance diff. score0.81.01.11.11.0-1.0-0.9
Locomotion velocity, session 10.00.00.20.0-0.10.00.4
Locomotion distance, session 14.55.86.1-2.4-2.52.42.4
Locomotion velocity, session 21.01.21.8-1.3-1.21.10.6
Locomotion distance, session 26.28.69.1-2.9-2.92.93.0
Locomotion velocity, session 30.50.51.10.40.7-0.6-1.1
Locomotion distance, session 31.51.71.9-1.4-1.31.41.1
Stereotopy head waving bouts, day 34.35.15.42.32.3-2.3-2.1
Stereotopy head waving duration, day 33.34.04.21.92.0-2.1-2.0
Locomotion velocity, session 71.11.21.3-1.1-1.11.01.0
Locomotion distance, session 76.27.98.4-2.8-2.92.82.8
Stereotopy head waving bouts, day 70.40.50.50.60.7-0.7-0.7
Stereotopy head waving duration, day 70.30.40.50.50.6-0.6-0.7
Locomotion velocity, session 80.60.70.80.70.9-0.8-0.9
Locomotion distance, session 80.60.91.0-0.9-0.91.01.0
Degree of sensitization distance0.10.10.2-0.3-0.40.30.4
Degree of sensitization stereotypy0.20.20.3-0.4-0.40.50.6
Conditioned locomotion1.82.12.31.51.4-1.4-1.5
Cocaine response after cond. corrected5.76.47.52.72.6-2.5-2.2
Cocaine response after cond. not corrected3.23.64.22.02.0-1.9-1.6
Cocaine response before conditioning2.73.33.7-1.9-1.81.81.6
Saline control response0.10.10.20.50.10.00.3
Bone: connectivity density0.20.30.30.60.6-0.5-0.4
Bone: cortical apparent density4.96.47.5-2.7-2.62.62.2
Bone: cortical area0.30.50.60.70.7-0.7-0.8
Bone: cortical porosity0.30.40.40.70.6-0.6-0.5
Bone: cortical porosity0.20.20.30.50.5-0.5-0.4
Bone: cortical thickness0.10.20.40.30.4-0.4-0.7
Bone: cortical thickness0.50.60.9-0.9-0.80.80.6
Bone: cortical tissue density5.47.18.2-2.9-2.82.72.3
Condit. Reinf. active minus inactive responses0.91.01.3-0.9-1.00.91.2
Condit. Reinf. active-inactive response ratio0.00.00.10.30.2-0.20.1
Condit. Reinf. active responses1.01.21.6-1.0-1.11.01.3
Condit. Reinf. inactive responses1.01.21.4-1.1-1.11.11.2
Incentive salience index mean1.82.22.8-1.4-1.51.41.7
Condit. Reinf. lever presses2.63.44.2-1.7-1.81.92.1
Condit. Reinf. active minus inactive responses0.20.20.7-0.2-0.40.30.8
Condit. Reinf. active-inactive response ratio0.40.41.2-0.0-0.40.41.1
Condit. Reinf. active responses0.10.20.4-0.2-0.40.30.6
Condit. Reinf. inactive responses0.00.00.1-0.1-0.00.0-0.2
Condit. Reinf. lever presses0.40.60.9-1.0-0.80.80.3
Condit. Reinf. lever reinforcers received0.20.20.4-0.3-0.40.40.6
Conditioned reinforcement - actives0.10.10.3-0.1-0.30.10.6
Conditioned reinforcement - inactives0.10.10.1-0.1-0.30.30.3
Conditioned locomotion0.20.30.50.70.5-0.6-0.2
Patch foraging indifference point 0 sec1.32.12.91.31.4-1.3-1.7
Patch foraging indifference point AUC0.10.10.1-0.3-0.20.30.3
Delay disc. indifference point, 0s delay0.00.00.1-0.1-0.10.2-0.3
Delay disc. indifference point, 16s delay1.01.01.20.91.1-1.0-1.1
Delay disc. indifference point, 2s delay0.10.10.1-0.3-0.40.3-0.0
Delay disc. indifference point, 24s delay0.80.70.8-0.9-0.90.90.8
Delay disc. indifference point, 4s delay1.21.21.8-1.4-1.21.20.6
Delay disc. indifference point, 8s delay0.10.10.1-0.4-0.30.30.2
Indifference point function ln k0.00.00.1-0.2-0.20.2-0.0
Indifference point function log k0.00.00.1-0.2-0.20.2-0.0
Patch foraging total patch changes 0 sec1.52.53.41.41.5-1.5-1.9
Patch foraging total patch changes 12 sec0.00.00.10.30.1-0.2-0.1
Patch foraging total patch changes 18 sec2.22.83.01.71.7-1.7-1.7
Patch foraging total patch changes 24 sec1.11.31.41.11.2-1.2-1.2
Patch foraging total patch changes 6 sec0.91.41.41.21.2-1.2-1.1
Patch foraging time to switch 0 sec0.10.10.3-0.2-0.30.20.5
Patch foraging water rate 0 sec1.82.93.01.71.7-1.7-1.7
Patch foraging water rate 12 sec0.40.70.90.70.9-0.7-0.9
Patch foraging water rate 18 sec0.00.00.00.10.00.1-0.0
Patch foraging water rate 24 sec1.41.92.11.41.4-1.4-1.3
Patch foraging water rate 6 sec0.00.00.10.30.3-0.10.0
Seeking ratio, delayed vs. immediate footshock1.61.81.91.41.3-1.3-1.4
Distance traveled before self-admin2.83.04.4-1.4-1.71.62.1
Distance traveled after self-admin0.10.20.30.60.4-0.30.2
Extensor digitorum longus weight0.83.13.71.61.8-1.7-1.9
Bone: elastic displacement0.00.00.10.20.1-0.10.1
Bone: elastic work0.00.00.00.1-0.0-0.00.0
Bone: endosteal estimation0.00.00.10.20.2-0.3-0.1
Bone: endosteal perimeter0.20.30.40.60.5-0.6-0.4
Epididymis fat weight0.10.20.30.60.4-0.4-0.1
Delta time in closed arm before/after self-admin0.10.10.30.20.2-0.3-0.6
Delta time in open arm before/after self-admin0.00.00.0-0.2-0.10.1-0.0
Diff in mean of infusions in LGA sessions1.51.72.2-1.2-1.31.21.5
Delay discount exponential model param0.10.10.10.40.3-0.3-0.1
Extinction: sum of active levers before priming1.21.21.4-1.2-1.21.10.9
Active lever presses in extinction session 60.00.00.10.10.3-0.2-0.1
Bone: final force0.10.10.30.60.3-0.4-0.1
Bone: final moment0.20.30.50.70.5-0.5-0.2
Food consumed during 24 hour testing period1.92.32.5-1.6-1.61.51.4
Glucose1.01.62.01.11.2-1.3-1.4
Heart weight1.31.92.31.51.3-1.5-1.2
Delay discount hyperbolic model param0.10.20.20.50.4-0.4-0.1
Intermittent access intake day 1-15 change1.01.01.11.01.0-1.0-0.9
Intermittent access intake escalation0.50.50.60.70.7-0.8-0.6
Intermittent access intake escalation 20.70.70.91.00.9-0.9-0.6
Intermitt. access day 1 inactive lever presses0.00.00.10.20.00.00.3
Intermitt. access day 15 inactive lever presses1.71.92.51.21.3-1.3-1.6
Intermitt. access escalation Index0.10.00.1-0.3-0.20.10.2
Intermittent access day 1 total infusions0.70.81.0-0.9-1.00.80.8
Intermittent access day 15 total infusions0.30.30.4-0.5-0.60.50.6
Intermittent access terminal intake (last 3 days)0.10.10.2-0.2-0.40.20.4
Intermittent access total infusions0.10.10.2-0.3-0.50.30.4
Intermittent access day 1 locomotion1.81.92.2-1.4-1.51.31.3
Intermittent access day 15 total locomotion0.30.30.4-0.5-0.60.40.6
Intermittent access total locomotion0.40.50.6-0.6-0.80.50.8
Intermittent access standard deviation1.01.01.31.11.0-1.1-0.8
Left kidney weight0.00.10.2-0.10.0-0.2-0.5
Right kidney weight0.61.72.91.01.1-1.3-1.7
Cocaine induced anxiety0.00.00.10.20.00.00.3
Post-drug Anxiety1.11.22.0-0.8-1.11.11.4
Baseline Anxiety0.00.00.00.00.0-0.1-0.1
Tail length15.547.056.1-7.5-7.26.95.8
Length with tail7.326.836.1-6.0-5.65.23.7
Length without tail0.00.10.4-0.2-0.1-0.1-0.6
Times rat made contact with spout0.50.60.7-0.8-0.80.70.8
Lifetime Intake0.20.20.3-0.5-0.60.50.4
Liver weight, left0.91.41.6-1.3-1.21.21.0
Liver weight, right0.40.71.1-1.0-1.00.80.4
Locomotor activity0.20.20.50.70.5-0.40.0
Locomotor testing distance0.30.51.11.10.8-0.60.0
Locomotor testing rearing0.10.10.20.50.3-0.10.3
Locomotion in novel chamber0.20.20.4-0.2-0.50.50.6
Locomotion in novel chamber post-restriction1.21.52.11.51.1-1.2-1.1
Fecal boli incidents, locomotor time 13.33.64.11.92.0-2.0-1.7
Change in fecal boli incidents, locomotor task2.12.02.2-1.4-1.51.41.3
Time >=10cm from walls, locomotor time 10.20.20.5-0.1-0.30.40.7
Bouts of movement, locomotor time 10.30.30.50.40.5-0.5-0.7
Total resting periods, locomotor time 10.70.81.10.70.8-0.9-1.1
Rest time, locomotor task time 10.20.20.30.30.4-0.4-0.5
Distance moved, locomotor task time 12.62.84.1-1.5-1.61.62.0
Vertical activity count, locomotor time 10.80.81.6-0.6-0.70.81.3
Time >=10cm from walls, locomotor time 20.50.50.7-0.6-0.60.70.8
Bouts of movement, locomotor time 20.00.00.10.30.1-0.2-0.0
Total resting periods, locomotor time 20.00.00.10.40.1-0.2-0.0
Rest time, locomotor task time 20.40.40.6-0.7-0.70.70.3
Distance moved, locomotor task time 20.20.20.3-0.6-0.40.40.3
Vertical activity count, locomotor time 20.10.10.2-0.3-0.30.20.4
Light reinforcement 10.00.10.10.30.2-0.10.2
Light reinforcement 20.40.50.7-0.6-0.70.70.8
Bone: marrow area0.00.00.00.10.0-0.2-0.0
Bone: maximum diameter0.20.40.50.70.6-0.7-0.5
Bone: maximum force0.61.01.11.00.9-1.0-0.9
Bone: maximum moment0.71.21.31.11.0-1.1-1.1
Mean time between licks in bursts0.91.31.81.01.0-1.1-1.4
Mean num. licks in bursts0.10.10.40.00.2-0.2-0.6
Cd content in liver0.50.51.4-0.1-0.40.71.2
Co content in liver0.00.00.10.30.1-0.00.2
Cu content in liver9.311.213.7-3.1-3.43.13.7
Fe content in liver2.02.42.6-1.5-1.61.51.6
K content in liver0.40.40.6-0.7-0.80.40.5
Mg content in liver2.42.43.1-1.6-1.81.41.5
Mn content in liver3.84.35.0-2.2-2.12.11.8
Na content in liver0.20.20.4-0.5-0.60.20.5
Rb content in liver0.20.20.4-0.2-0.30.40.7
Se content in liver0.10.10.30.50.4-0.4-0.2
Sr content in liver0.80.71.2-1.1-0.90.90.3
Zn content in liver0.20.20.5-0.1-0.40.30.7
Bone: minimum diameter0.00.10.10.10.1-0.3-0.4
Time in familiar zone, hab. session 10.20.20.4-0.2-0.40.50.6
Time in novel zone, hab. session 12.72.73.11.41.6-1.7-1.8
Total zone transitions, hab. session 16.89.610.0-3.0-3.13.23.1
Total locomotion distance, hab. session 14.25.96.8-2.3-2.42.42.6
Locomotion velocity, hab. session 15.37.58.3-2.6-2.82.72.9
Time in familiar zone, hab. session 21.21.21.51.21.2-1.1-0.9
Time in novel zone, hab. session 20.20.20.2-0.4-0.50.40.4
Total zone transitions, hab. session 24.66.07.1-2.3-2.42.42.7
Total locomotion distance, hab. session 21.01.31.9-1.0-1.11.01.4
Locomotion velocity, hab. session 21.11.52.0-1.1-1.31.11.4
Novel to familiar place preference ratio0.40.40.6-0.5-0.60.60.8
Novelty place preference0.30.30.4-0.5-0.50.60.7
Time in novel zone, NPP test0.20.20.3-0.3-0.30.50.6
Total zone transitions, NPP test6.28.89.7-2.8-2.93.03.1
Total locomotion distance, NPP test2.23.03.8-1.5-1.71.72.0
Locomotion velocity, NPP test2.73.84.1-1.9-2.01.92.0
Intraocular pressure1.52.02.2-1.4-1.41.51.4
Delta distance traveled before/after self-admin2.83.13.31.71.8-1.7-1.7
Delta ambulatory time before/after self-admin3.13.43.71.91.9-1.9-1.7
Parametrial fat weight0.20.30.5-0.4-0.50.50.7
Pavlov. Cond. lever latency1.72.13.21.11.3-1.5-1.8
Pavlov. Cond. magazine entry latency0.20.30.7-0.3-0.40.50.9
Pavlov. Cond. change in total contacts4.14.45.9-1.8-2.02.12.4
Pavlov. Cond. index score1.11.42.6-0.9-1.01.21.6
Pavlov. Cond. latency score1.11.52.4-0.9-1.01.21.6
Pavlov. Cond. lever contacts2.83.34.4-1.5-1.71.92.1
Pavlov. Cond. magazine entry number0.70.91.70.70.8-0.9-1.3
Pavlov. Cond. intertrial magazine entries0.91.11.4-1.0-1.21.01.0
Pavlov. Cond. lever-magazine prob. diff.1.01.22.2-0.8-0.91.11.5
Pavlov. Cond. response bias1.01.22.2-0.8-0.91.11.5
Pavlov. Cond. lever latency1.82.43.7-1.2-1.41.51.9
Pavlov. Cond. magazine entry latency0.40.40.9-1.0-0.70.6-0.1
Pavlov. Cond. change in total contacts0.50.71.50.50.7-0.7-1.2
Pavlov. Cond. index score0.50.71.50.40.6-0.7-1.2
Pavlov. Cond. latency score0.30.41.10.10.4-0.5-1.1
Pavlov. Cond. lever contacts1.21.62.51.11.2-1.2-1.6
Pavlov. Cond. magazine entry number0.20.30.90.2-0.10.31.0
Pavlov. Cond. intertrial magazine entries1.92.53.7-1.3-1.51.61.9
Pavlov. Cond. lever-magazine prob. diff.0.60.81.80.50.7-0.8-1.4
Pavlov. Cond. response bias0.91.22.10.91.0-1.1-1.4
Time in closed arm before self-admin3.03.43.61.91.8-1.9-1.7
Time in closed arm after self-admin3.43.44.01.81.7-1.9-2.0
Time in open arm before self-admin0.50.60.7-0.7-0.70.80.8
Time in open arm after self-admin0.50.60.7-0.7-0.70.80.7
Bone: periosteal estimation0.20.50.60.80.7-0.8-0.6
Bone: periosteal perimeter0.91.51.51.21.2-1.2-1.2
Bone: post-yield work0.71.01.30.90.9-1.0-1.2
Progressive ratio test 1 active lever presses0.91.01.0-1.0-1.01.01.0
Progressive ratio test 1 breakpoint1.01.11.2-1.0-1.11.11.0
Progressive ratio test 1 inactive lever presses0.20.20.30.60.6-0.4-0.3
Progressive ratio test 2 active lever presses1.11.22.0-0.8-1.11.01.4
Progressive ratio test 2 breakpoint0.60.71.4-0.5-0.80.71.2
Progressive ratio test 2 inactive lever presses0.00.00.10.1-0.10.00.3
Incentive Sensitization - Responses0.20.20.80.1-0.30.20.9
Incentive Sensitization - Breakpoint0.10.20.50.3-0.10.00.7
Sum of active levers in priming session hrs 5-65.75.56.2-2.5-2.42.32.2
Progressive ratio0.10.10.30.60.3-0.2-0.1
Food seeking constrained by brief footshock0.00.10.10.30.3-0.20.1
Seeking ratio, punishment vs. effort0.40.50.8-0.9-0.70.70.6
Retroperitoneal fat weight0.20.60.90.90.8-0.8-0.6
Reaction time number correct1.21.72.71.21.3-1.1-1.6
Reaction time mean minus median2.12.83.5-1.9-1.81.61.4
Reaction time mean minus median AUC3.03.94.5-2.1-2.11.91.8
Reaction time num false alarms0.71.01.0-1.0-0.91.01.0
Reaction time num false alarms AUC0.81.11.2-1.1-1.01.11.0
Reaction time trials correct on left1.21.72.71.21.3-1.1-1.6
Reaction time trials on left1.11.62.61.11.2-1.1-1.6
Reaction time mean1.01.41.8-1.3-1.31.11.0
Reaction time mean AUC1.31.72.1-1.5-1.41.21.1
Median of all reaction times0.30.40.6-0.8-0.80.50.5
Reaction time omissions1.01.41.5-1.2-1.21.21.0
Reaction time false alarm rate1.52.12.5-1.4-1.41.41.6
Reaction time premature initiation rate0.30.40.5-0.7-0.60.70.4
Reaction time premature initiations0.00.10.1-0.2-0.10.2-0.4
Std. dev. reaction times1.92.63.4-1.9-1.71.51.3
Reaction time trials completed1.11.62.61.11.2-1.1-1.6
Reaction time trials AUC1.11.62.51.11.2-1.1-1.6
Run reversals in cocaine runway, females0.10.10.3-0.5-0.40.4-0.0
Run reversals in cocaine runway, males1.11.11.71.31.1-1.0-0.7
Latency to leave start box in cocaine runway5.55.96.72.32.3-2.5-2.6
Latency to leave start box in cocaine runway, F8.99.711.82.93.0-3.1-3.4
Latency to leave start box in cocaine runway, M0.10.10.10.30.2-0.30.1
Std. dev. time between licks in bursts0.80.90.91.01.0-1.0-1.0
Total sessions with >9 infusions0.50.60.9-0.9-0.80.70.6
Short access day 1 total inactive lever presses0.40.40.6-0.7-0.60.80.3
Short access day 10 total inactive lever presses0.20.30.40.60.5-0.4-0.5
Short access day 1 total infusions0.10.10.2-0.4-0.20.2-0.1
Short access day 10 total infusions0.00.00.1-0.1-0.2-0.1-0.2
Short access total infusions0.00.10.2-0.1-0.0-0.1-0.4
Short access day 1 locomotion0.00.00.10.10.1-0.2-0.3
Short access day 10 total locomotion0.50.60.8-0.8-0.90.60.7
Short access total locomotion0.00.00.1-0.2-0.2-0.0-0.1
One hour access (0.3 mA shock)0.91.01.6-0.7-0.91.01.3
Compulsive drug intake7.57.67.8-2.7-2.72.82.8
One hour access (shock baseline)1.21.42.01.41.2-1.2-0.9
Social response proportion2.22.42.7-1.6-1.51.51.7
Social responses0.10.10.30.00.00.20.6
Social time0.10.10.20.40.30.10.5
Soleus weight1.64.85.02.12.2-2.2-2.2
Bone: stiffness0.00.00.10.30.2-0.3-0.1
Tibialis anterior weight0.10.30.5-0.5-0.40.70.7
Time to tail flick, vehicle, before self-admin1.41.41.7-1.2-1.11.21.3
Time to tail flick, vehicle, after self-admin0.70.81.00.80.8-0.9-1.0
Time to tail flick, test, before self-admin0.70.70.80.70.8-0.8-0.9
Time to tail flick, test, after self-admin0.50.50.80.50.7-0.7-0.9
Delta time to tail flick, vehicle, before/after SA3.03.03.31.71.7-1.7-1.8
Delta time to tail flick, test, before/after SA0.40.40.5-0.7-0.60.70.6
Tibia length0.71.92.21.31.3-1.4-1.5
Ambulatory time before self-admin1.91.93.0-1.1-1.41.31.7
Ambulatory time after self-admin0.30.30.60.80.6-0.6-0.1
Bone: tissue strength0.90.91.10.90.9-0.9-1.1
Total heroin consumption0.60.70.9-0.8-0.70.90.9
Bone: trabecular number0.10.10.20.50.3-0.40.0
Bone: trabecular spacing0.00.00.10.20.20.00.2
Bone: trabecular thickness3.54.26.01.71.9-2.1-2.4
Bone: trabecular tissue density0.00.00.1-0.2-0.10.1-0.3
Water consumed over 24 hours0.00.10.1-0.3-0.30.30.1
Number of responses in last shaping day1.81.92.01.41.4-1.3-1.4