Ube2z

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression Ube2z 0.05 0.04 3.5e-05 0.03 0.03 0.02 0.03 3.2e-04 1.3e-04 4.1e-03 2.8e-04
2 Liver mRNA stability Ube2z 0.03 0.02 1.1e-04 0.02 0.03 0.02 0.02 2.8e-03 2.6e-04 2.7e-03 1.6e-03
3 BLA gene expression Ube2z 0.06 0.05 2.0e-03 0.02 0.04 0.02 0.03 3.4e-02 5.5e-03 3.9e-02 1.1e-02
4 PL gene expression Ube2z 0.06 0.06 2.9e-05 0.03 0.04 0.03 0.04 2.4e-04 1.0e-04 1.5e-04 8.2e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.12.03.11.81.5-1.5-0.4
Area under the delay curve0.10.10.1-0.4-0.40.4-0.2
BMI with tail17.259.482.59.18.5-8.2-3.9
BMI without tail1.44.36.82.62.3-2.2-0.6
Body weight1.35.66.12.42.3-2.5-2.4
Weight adjusted by age0.20.30.4-0.6-0.50.50.3
Bone surface0.40.81.01.00.9-1.0-0.6
Bone volume1.22.12.51.61.5-1.6-1.1
Breakpoint value in progressive ratio session2.22.72.9-1.7-1.61.71.5
Number of licking bursts0.81.42.7-0.8-1.01.01.6
Context. condit. distance diff. score0.70.91.21.11.0-1.0-0.5
Locomotion velocity, session 10.10.10.50.0-0.10.10.7
Locomotion distance, session 14.35.46.2-2.4-2.52.42.0
Locomotion velocity, session 20.91.11.9-1.4-1.21.1-0.1
Locomotion distance, session 26.08.49.0-2.9-3.03.02.7
Locomotion velocity, session 30.60.72.00.40.6-0.6-1.4
Locomotion distance, session 31.21.31.8-1.3-1.21.30.6
Stereotopy head waving bouts, day 34.14.95.62.32.3-2.4-1.8
Stereotopy head waving duration, day 33.44.14.62.02.0-2.1-1.9
Locomotion velocity, session 71.01.11.6-1.3-1.21.10.3
Locomotion distance, session 75.57.08.8-2.9-3.02.81.7
Stereotopy head waving bouts, day 70.20.30.40.50.6-0.6-0.3
Stereotopy head waving duration, day 70.30.40.50.50.7-0.6-0.7
Locomotion velocity, session 80.40.50.80.70.9-0.7-0.5
Locomotion distance, session 80.71.01.4-0.9-0.91.01.2
Degree of sensitization distance0.10.10.3-0.4-0.50.40.1
Degree of sensitization stereotypy0.30.30.7-0.4-0.40.50.8
Conditioned locomotion1.41.72.01.41.3-1.3-1.0
Cocaine response after cond. corrected4.55.47.72.82.6-2.5-0.9
Cocaine response after cond. not corrected2.52.94.22.01.9-1.8-0.7
Cocaine response before conditioning2.32.83.8-1.9-1.81.80.8
Saline control response0.50.62.00.0-0.40.51.4
Bone: connectivity density0.20.30.60.80.6-0.60.1
Bone: cortical apparent density4.25.78.2-2.9-2.72.60.9
Bone: cortical area0.40.60.70.90.7-0.7-0.6
Bone: cortical porosity0.20.20.20.50.4-0.5-0.5
Bone: cortical porosity0.30.40.50.70.6-0.6-0.5
Bone: cortical thickness0.10.10.30.20.2-0.1-0.5
Bone: cortical thickness0.60.70.8-0.8-0.80.90.8
Bone: cortical tissue density4.76.49.2-3.0-2.82.81.0
Condit. Reinf. active minus inactive responses0.91.01.2-1.0-1.11.00.9
Condit. Reinf. active-inactive response ratio0.00.00.10.20.2-0.10.3
Condit. Reinf. active responses1.01.21.3-1.1-1.21.11.0
Condit. Reinf. inactive responses0.91.21.4-1.0-1.11.11.2
Incentive salience index mean1.82.32.6-1.4-1.51.51.6
Condit. Reinf. lever presses2.63.65.3-1.6-1.81.82.3
Condit. Reinf. active minus inactive responses0.40.51.7-0.1-0.40.41.3
Condit. Reinf. active-inactive response ratio1.11.34.80.1-0.30.42.2
Condit. Reinf. active responses0.10.20.4-0.1-0.40.30.6
Condit. Reinf. inactive responses0.20.20.7-0.3-0.10.1-0.9
Condit. Reinf. lever presses0.30.40.6-0.8-0.70.7-0.1
Condit. Reinf. lever reinforcers received0.20.20.4-0.3-0.50.50.7
Conditioned reinforcement - actives0.40.61.0-0.6-0.80.71.0
Conditioned reinforcement - inactives0.00.00.00.1-0.20.10.2
Conditioned locomotion0.40.50.80.90.6-0.70.6
Patch foraging indifference point 0 sec1.01.82.01.21.4-1.4-1.3
Patch foraging indifference point AUC0.00.00.1-0.3-0.20.3-0.1
Delay disc. indifference point, 0s delay0.10.10.2-0.4-0.50.50.0
Delay disc. indifference point, 16s delay0.91.01.10.91.0-1.0-0.9
Delay disc. indifference point, 2s delay0.10.10.2-0.3-0.40.3-0.3
Delay disc. indifference point, 24s delay0.30.40.5-0.7-0.70.70.2
Delay disc. indifference point, 4s delay1.51.62.5-1.6-1.41.4-0.2
Delay disc. indifference point, 8s delay0.10.10.1-0.3-0.30.3-0.1
Indifference point function ln k0.00.00.1-0.3-0.20.20.1
Indifference point function log k0.00.00.1-0.3-0.20.20.1
Patch foraging total patch changes 0 sec1.01.92.11.31.5-1.4-1.4
Patch foraging total patch changes 12 sec0.00.00.00.0-0.00.00.1
Patch foraging total patch changes 18 sec1.42.12.31.41.5-1.5-1.5
Patch foraging total patch changes 24 sec0.40.80.90.91.0-1.0-0.6
Patch foraging total patch changes 6 sec0.60.91.11.01.0-1.0-0.8
Patch foraging time to switch 0 sec0.10.20.6-0.3-0.40.30.7
Patch foraging water rate 0 sec1.32.83.21.71.8-1.7-1.5
Patch foraging water rate 12 sec0.30.71.20.60.8-0.7-1.1
Patch foraging water rate 18 sec0.00.00.0-0.0-0.00.1-0.1
Patch foraging water rate 24 sec1.11.51.71.31.3-1.3-1.0
Patch foraging water rate 6 sec0.10.10.40.30.3-0.10.6
Seeking ratio, delayed vs. immediate footshock2.32.93.51.71.6-1.6-1.9
Distance traveled before self-admin1.82.35.3-0.9-1.21.32.3
Distance traveled after self-admin0.20.20.70.40.2-0.10.8
Extensor digitorum longus weight0.93.44.71.61.8-1.8-2.2
Bone: elastic displacement0.10.10.10.30.2-0.30.2
Bone: elastic work0.00.00.00.1-0.0-0.00.1
Bone: endosteal estimation0.10.20.30.50.4-0.5-0.4
Bone: endosteal perimeter0.30.70.91.00.9-0.9-0.4
Epididymis fat weight0.10.40.90.90.6-0.60.3
Delta time in closed arm before/after self-admin0.70.61.90.40.4-0.5-1.4
Delta time in open arm before/after self-admin1.01.01.4-1.2-1.01.10.6
Diff in mean of infusions in LGA sessions1.31.62.3-1.1-1.31.21.5
Delay discount exponential model param0.20.20.30.50.5-0.50.2
Extinction: sum of active levers before priming0.91.01.5-1.1-1.21.10.4
Active lever presses in extinction session 60.10.10.20.30.4-0.3-0.0
Bone: final force0.20.30.60.70.4-0.40.5
Bone: final moment0.20.30.70.80.5-0.50.4
Food consumed during 24 hour testing period1.62.22.6-1.6-1.61.61.1
Glucose2.13.44.21.71.8-1.8-2.1
Heart weight1.01.51.91.41.2-1.3-0.9
Delay discount hyperbolic model param0.20.20.30.50.5-0.50.3
Intermittent access intake day 1-15 change0.10.20.7-0.1-0.10.10.8
Intermittent access intake escalation0.10.20.90.0-0.00.11.0
Intermittent access intake escalation 20.40.40.60.70.6-0.60.6
Intermitt. access day 1 inactive lever presses0.00.00.00.1-0.00.10.2
Intermitt. access day 15 inactive lever presses1.22.42.91.31.5-1.5-1.7
Intermitt. access escalation Index0.30.40.6-0.8-0.60.60.6
Intermittent access day 1 total infusions0.10.10.3-0.1-0.20.1-0.5
Intermittent access day 15 total infusions0.10.10.1-0.2-0.30.30.3
Intermittent access terminal intake (last 3 days)0.00.00.00.20.0-0.10.0
Intermittent access total infusions0.10.10.20.20.0-0.1-0.5
Intermittent access day 1 locomotion0.20.30.4-0.6-0.60.5-0.3
Intermittent access day 15 total locomotion0.10.20.3-0.4-0.50.40.4
Intermittent access total locomotion0.00.00.1-0.1-0.30.10.1
Intermittent access standard deviation0.51.01.51.21.0-1.1-0.5
Left kidney weight0.10.31.00.10.1-0.3-1.0
Right kidney weight0.41.82.11.31.3-1.4-1.4
Cocaine induced anxiety0.10.10.20.40.3-0.40.2
Post-drug Anxiety0.40.50.6-0.6-0.80.60.7
Baseline Anxiety0.91.11.5-1.2-1.21.10.5
Tail length16.062.487.8-9.4-8.88.43.8
Length with tail5.825.340.0-6.3-5.75.30.8
Length without tail0.51.85.40.50.7-0.9-2.3
Times rat made contact with spout0.40.50.6-0.8-0.80.70.4
Lifetime Intake0.10.10.20.10.1-0.1-0.5
Liver weight, left0.10.10.30.30.2-0.10.6
Liver weight, right0.10.10.2-0.4-0.30.3-0.4
Locomotor activity0.20.40.80.70.4-0.30.9
Locomotor testing distance0.61.11.71.31.0-0.91.0
Locomotor testing rearing0.20.51.70.50.2-0.11.3
Locomotion in novel chamber0.20.20.4-0.3-0.50.50.6
Locomotion in novel chamber post-restriction1.01.72.91.71.3-1.4-0.5
Fecal boli incidents, locomotor time 12.94.35.02.02.2-2.2-1.8
Change in fecal boli incidents, locomotor task2.12.02.6-1.5-1.61.50.9
Time >=10cm from walls, locomotor time 10.50.51.7-0.2-0.40.51.3
Bouts of movement, locomotor time 10.30.30.60.30.4-0.5-0.8
Total resting periods, locomotor time 10.70.81.00.70.8-0.9-1.0
Rest time, locomotor task time 10.30.30.40.50.6-0.6-0.5
Distance moved, locomotor task time 11.62.43.2-1.4-1.51.51.8
Vertical activity count, locomotor time 10.30.81.6-0.6-0.80.91.3
Time >=10cm from walls, locomotor time 20.30.50.6-0.6-0.70.80.7
Bouts of movement, locomotor time 20.00.00.10.2-0.0-0.10.3
Total resting periods, locomotor time 20.10.10.30.30.0-0.10.5
Rest time, locomotor task time 20.40.50.7-0.8-0.70.80.3
Distance moved, locomotor task time 20.10.20.3-0.5-0.40.3-0.3
Vertical activity count, locomotor time 20.00.10.1-0.3-0.30.2-0.1
Light reinforcement 10.10.31.00.40.3-0.21.0
Light reinforcement 20.30.51.2-0.4-0.50.51.1
Bone: marrow area0.10.10.20.40.3-0.4-0.3
Bone: maximum diameter0.40.71.11.00.9-0.9-0.2
Bone: maximum force0.50.91.31.10.9-1.0-0.6
Bone: maximum moment0.71.21.61.31.1-1.1-0.8
Mean time between licks in bursts0.61.52.21.11.1-1.1-1.5
Mean num. licks in bursts0.30.52.00.00.2-0.3-1.4
Cd content in liver0.30.31.10.1-0.10.21.1
Co content in liver0.00.00.10.10.00.00.4
Cu content in liver8.29.810.9-3.0-3.33.13.1
Fe content in liver0.91.11.5-1.0-1.21.10.9
K content in liver0.80.81.2-1.0-1.10.7-0.6
Mg content in liver4.95.07.2-2.5-2.72.30.9
Mn content in liver4.44.96.9-2.6-2.42.41.2
Na content in liver0.10.10.1-0.2-0.40.0-0.3
Rb content in liver1.21.43.2-0.7-1.01.11.8
Se content in liver0.20.20.30.60.4-0.40.1
Sr content in liver1.21.11.9-1.4-1.11.0-0.5
Zn content in liver0.20.20.4-0.2-0.50.30.6
Bone: minimum diameter0.10.30.90.20.2-0.4-0.9
Time in familiar zone, hab. session 10.40.41.2-0.2-0.40.51.1
Time in novel zone, hab. session 12.82.84.01.41.6-1.7-2.0
Total zone transitions, hab. session 16.69.210.2-3.0-3.13.22.8
Total locomotion distance, hab. session 14.05.76.0-2.3-2.42.52.4
Locomotion velocity, hab. session 15.17.27.8-2.6-2.82.82.6
Time in familiar zone, hab. session 21.01.11.51.21.2-1.1-0.4
Time in novel zone, hab. session 20.20.20.3-0.4-0.50.40.2
Total zone transitions, hab. session 24.45.66.2-2.2-2.42.42.5
Total locomotion distance, hab. session 20.91.21.8-0.9-1.11.01.3
Locomotion velocity, hab. session 21.01.41.5-1.1-1.21.21.2
Novel to familiar place preference ratio0.40.40.8-0.4-0.50.60.9
Novelty place preference0.40.40.7-0.4-0.50.60.9
Time in novel zone, NPP test0.20.30.7-0.2-0.30.40.8
Total zone transitions, NPP test6.08.79.2-2.8-3.03.03.0
Total locomotion distance, NPP test2.12.93.5-1.5-1.71.71.9
Locomotion velocity, NPP test2.53.64.0-1.9-2.02.01.7
Intraocular pressure1.11.61.9-1.4-1.31.40.9
Delta distance traveled before/after self-admin1.31.42.11.01.2-1.1-1.4
Delta ambulatory time before/after self-admin1.41.72.11.21.3-1.2-1.5
Parametrial fat weight0.10.20.40.40.4-0.5-0.6
Pavlov. Cond. lever latency1.82.34.51.11.2-1.4-2.1
Pavlov. Cond. magazine entry latency0.30.41.4-0.2-0.30.41.2
Pavlov. Cond. change in total contacts4.14.46.0-1.8-2.02.12.4
Pavlov. Cond. index score1.51.84.2-0.8-1.01.22.0
Pavlov. Cond. latency score1.41.73.7-0.9-1.01.21.9
Pavlov. Cond. lever contacts3.23.95.9-1.6-1.81.92.4
Pavlov. Cond. magazine entry number0.91.22.40.70.9-1.0-1.6
Pavlov. Cond. intertrial magazine entries0.80.91.3-1.0-1.21.00.6
Pavlov. Cond. lever-magazine prob. diff.1.51.84.1-0.8-1.01.22.0
Pavlov. Cond. response bias1.51.93.9-0.9-1.11.22.0
Pavlov. Cond. lever latency1.52.02.7-1.2-1.41.41.6
Pavlov. Cond. magazine entry latency0.40.51.0-0.8-0.50.4-1.0
Pavlov. Cond. change in total contacts0.50.71.50.50.7-0.8-1.2
Pavlov. Cond. index score0.60.82.00.50.7-0.8-1.4
Pavlov. Cond. latency score0.40.51.60.20.4-0.5-1.3
Pavlov. Cond. lever contacts1.21.71.91.21.3-1.3-1.4
Pavlov. Cond. magazine entry number0.70.93.30.2-0.10.31.8
Pavlov. Cond. intertrial magazine entries1.72.63.9-1.3-1.51.62.0
Pavlov. Cond. lever-magazine prob. diff.0.70.92.30.50.7-0.8-1.5
Pavlov. Cond. response bias1.31.72.41.11.3-1.3-1.6
Time in closed arm before self-admin2.73.44.22.01.9-2.0-1.4
Time in closed arm after self-admin4.34.66.81.91.9-2.0-2.6
Time in open arm before self-admin0.50.50.6-0.7-0.80.80.7
Time in open arm after self-admin2.62.93.2-1.8-1.71.81.5
Bone: periosteal estimation0.30.61.01.00.8-0.9-0.4
Bone: periosteal perimeter1.22.02.61.61.5-1.5-0.9
Bone: post-yield work0.91.31.81.01.1-1.1-1.3
Progressive ratio test 1 active lever presses0.91.11.3-1.1-1.11.10.8
Progressive ratio test 1 breakpoint0.70.80.9-0.9-1.01.00.7
Progressive ratio test 1 inactive lever presses0.30.40.60.80.7-0.6-0.2
Progressive ratio test 2 active lever presses0.50.60.8-0.6-0.90.80.9
Progressive ratio test 2 breakpoint0.50.60.8-0.6-0.80.80.9
Progressive ratio test 2 inactive lever presses0.00.00.10.40.1-0.20.1
Incentive Sensitization - Responses0.10.20.40.1-0.30.20.7
Incentive Sensitization - Breakpoint0.10.10.40.2-0.20.10.6
Sum of active levers in priming session hrs 5-63.73.54.6-2.1-1.92.01.2
Progressive ratio0.10.20.60.50.3-0.20.7
Food seeking constrained by brief footshock0.10.10.30.20.2-0.10.6
Seeking ratio, punishment vs. effort0.40.61.1-1.0-0.80.8-0.0
Retroperitoneal fat weight0.31.32.41.51.2-1.2-0.2
Reaction time number correct0.71.42.61.01.0-1.0-1.6
Reaction time mean minus median0.82.13.1-1.8-1.71.50.4
Reaction time mean minus median AUC1.12.83.8-2.0-1.91.80.8
Reaction time num false alarms0.81.21.3-1.1-1.01.11.1
Reaction time num false alarms AUC0.91.41.5-1.2-1.11.21.1
Reaction time trials correct on left0.71.42.61.01.0-1.0-1.6
Reaction time trials on left0.71.32.50.91.0-1.0-1.6
Reaction time mean0.60.91.5-1.2-1.21.00.0
Reaction time mean AUC0.71.11.7-1.3-1.31.10.1
Median of all reaction times0.30.40.6-0.8-0.80.60.0
Reaction time omissions1.11.62.1-1.5-1.41.30.7
Reaction time false alarm rate1.52.13.0-1.4-1.31.41.7
Reaction time premature initiation rate0.20.30.4-0.6-0.50.60.4
Reaction time premature initiations0.00.10.2-0.3-0.10.2-0.4
Std. dev. reaction times1.01.82.9-1.7-1.61.40.1
Reaction time trials completed0.71.32.50.91.0-1.0-1.6
Reaction time trials AUC0.71.32.50.91.0-1.0-1.6
Run reversals in cocaine runway, females0.10.10.3-0.4-0.20.2-0.5
Run reversals in cocaine runway, males0.90.91.81.31.0-1.00.1
Latency to leave start box in cocaine runway5.05.76.32.32.3-2.5-2.4
Latency to leave start box in cocaine runway, F7.88.910.22.82.9-3.0-3.2
Latency to leave start box in cocaine runway, M0.10.10.10.30.1-0.40.1
Std. dev. time between licks in bursts0.81.01.41.21.1-1.1-0.5
Total sessions with >9 infusions0.20.20.8-0.10.1-0.2-0.9
Short access day 1 total inactive lever presses0.50.60.9-0.9-0.90.90.2
Short access day 10 total inactive lever presses0.61.41.81.41.2-1.2-0.9
Short access day 1 total infusions0.20.30.9-0.10.1-0.2-1.0
Short access day 10 total infusions0.10.20.50.20.2-0.3-0.7
Short access total infusions0.40.51.30.30.4-0.5-1.1
Short access day 1 locomotion0.50.60.80.80.7-0.9-0.7
Short access day 10 total locomotion0.10.10.20.40.3-0.4-0.3
Short access total locomotion0.30.40.60.50.6-0.7-0.8
One hour access (0.3 mA shock)0.70.81.3-0.7-0.90.91.2
Compulsive drug intake2.93.53.9-2.0-1.82.01.6
One hour access (shock baseline)0.60.91.51.21.0-1.0-0.4
Social response proportion2.12.42.9-1.7-1.61.61.2
Social responses0.20.20.7-0.0-0.00.20.9
Social time0.60.82.70.70.4-0.11.6
Soleus weight1.75.05.32.22.3-2.3-2.2
Bone: stiffness0.00.00.10.40.1-0.2-0.2
Tibialis anterior weight0.10.40.8-0.4-0.30.60.9
Time to tail flick, vehicle, before self-admin3.03.23.4-1.8-1.81.81.7
Time to tail flick, vehicle, after self-admin0.81.11.41.21.0-1.1-0.9
Time to tail flick, test, before self-admin0.70.71.20.70.8-0.8-1.1
Time to tail flick, test, after self-admin1.31.32.60.81.0-1.0-1.6
Delta time to tail flick, vehicle, before/after SA5.04.85.82.42.3-2.3-1.7
Delta time to tail flick, test, before/after SA0.30.30.4-0.6-0.60.60.5
Tibia length0.72.12.71.31.3-1.4-1.6
Ambulatory time before self-admin1.01.53.7-0.6-0.90.91.9
Ambulatory time after self-admin0.10.10.20.40.2-0.20.3
Bone: tissue strength1.11.21.81.01.0-1.0-1.3
Total heroin consumption1.21.42.5-1.0-1.01.21.6
Bone: trabecular number0.20.40.60.80.5-0.60.6
Bone: trabecular spacing0.10.20.60.10.00.10.8
Bone: trabecular thickness4.86.09.32.12.2-2.4-3.0
Bone: trabecular tissue density0.20.30.9-0.3-0.10.1-1.0
Water consumed over 24 hours0.00.10.1-0.2-0.20.30.1
Number of responses in last shaping day0.91.01.21.11.0-1.0-0.8