U2af1l4

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression U2af1l4 0.05 0.03 1.1e-07 0.05 0.05 0.05 0.05 1.1e-07 2.5e-08 2.2e-08 2.1e-08
2 IL intron excision ratio chr1_94944739_94944912 0.26 0.16 7.8e-03 0.01 0 0.02 0.03 1.9e-01 2.9e-01 8.6e-02 6.9e-02
3 pVTA gene expression U2af1l4 0.04 0.03 8.6e-03 0.02 0.01 0.01 0.01 1.2e-02 2.4e-02 3.1e-02 2.0e-02
4 Brain gene expression U2af1l4 0.08 0.06 8.0e-06 0.07 0.06 0.07 0.07 3.0e-07 2.1e-06 3.8e-07 4.5e-07

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.81.42.2-1.4-0.7-1.1-1.5
Area under the delay curve0.70.81.3-0.9-1.10.60.8
BMI with tail0.20.51.10.4-0.60.71.0
BMI without tail0.30.82.4-0.9-1.6-0.10.3
Body weight2.29.716.0-4.0-3.0-2.7-2.5
Weight adjusted by age0.10.20.3-0.5-0.4-0.6-0.4
Bone surface1.22.13.6-1.9-1.9-0.7-1.0
Bone volume1.42.43.9-2.0-1.8-1.0-1.3
Breakpoint value in progressive ratio session0.60.71.4-1.0-1.2-0.30.3
Number of licking bursts2.33.75.52.10.52.32.2
Context. condit. distance diff. score0.40.51.00.1-0.51.00.9
Locomotion velocity, session 10.20.20.30.50.4-0.4-0.5
Locomotion distance, session 11.41.76.2-0.8-2.50.40.0
Locomotion velocity, session 20.40.41.31.1-0.10.60.4
Locomotion distance, session 22.23.04.11.4-2.01.71.8
Locomotion velocity, session 30.20.20.30.6-0.60.10.3
Locomotion distance, session 33.53.812.9-1.4-3.60.30.6
Stereotopy head waving bouts, day 31.61.95.60.62.4-0.9-0.9
Stereotopy head waving duration, day 32.02.47.90.92.8-0.7-0.6
Locomotion velocity, session 70.80.92.9-0.5-1.70.20.4
Locomotion distance, session 70.50.61.8-0.3-1.3-0.7-0.4
Stereotopy head waving bouts, day 71.61.83.01.20.41.71.7
Stereotopy head waving duration, day 71.41.72.21.51.11.31.3
Locomotion velocity, session 82.83.44.82.2-0.02.02.2
Locomotion distance, session 82.23.24.21.1-1.82.02.0
Degree of sensitization distance1.31.33.90.52.0-0.7-0.9
Degree of sensitization stereotypy2.02.24.11.0-0.22.01.9
Conditioned locomotion0.60.71.30.60.11.11.1
Cocaine response after cond. corrected1.01.12.90.41.7-0.6-1.1
Cocaine response after cond. not corrected1.72.14.30.32.1-1.1-1.6
Cocaine response before conditioning0.81.01.9-1.4-0.2-0.8-1.1
Saline control response0.20.30.50.60.7-0.4-0.4
Bone: connectivity density0.30.40.9-0.8-0.9-0.1-0.5
Bone: cortical apparent density0.71.02.41.5-0.00.90.8
Bone: cortical area1.32.13.0-1.6-0.8-1.7-1.5
Bone: cortical porosity2.32.54.70.8-0.32.22.2
Bone: cortical porosity3.03.26.01.1-0.32.42.4
Bone: cortical thickness0.81.32.4-1.0-0.3-1.5-1.3
Bone: cortical thickness0.20.20.60.80.5-0.30.0
Bone: cortical tissue density0.91.32.71.7-0.11.11.0
Condit. Reinf. active minus inactive responses0.20.20.40.40.10.70.4
Condit. Reinf. active-inactive response ratio0.30.30.90.31.0-0.3-0.6
Condit. Reinf. active responses1.92.33.81.70.11.91.6
Condit. Reinf. inactive responses3.23.96.21.9-0.72.52.4
Incentive salience index mean0.40.51.00.6-0.31.00.7
Condit. Reinf. lever presses0.50.71.30.4-0.61.10.9
Condit. Reinf. active minus inactive responses0.40.60.8-0.9-0.8-0.4-0.7
Condit. Reinf. active-inactive response ratio0.10.10.20.50.40.2-0.1
Condit. Reinf. active responses1.52.13.7-1.9-1.8-0.6-1.0
Condit. Reinf. inactive responses2.12.75.9-2.2-2.4-0.0-0.3
Condit. Reinf. lever presses4.05.510.9-3.3-1.9-1.8-2.1
Condit. Reinf. lever reinforcers received1.82.54.9-2.1-2.2-0.4-0.8
Conditioned reinforcement - actives0.30.51.11.00.90.50.1
Conditioned reinforcement - inactives1.72.54.1-0.1-1.52.02.0
Conditioned locomotion1.72.23.71.91.01.51.4
Patch foraging indifference point 0 sec0.00.10.1-0.10.30.30.1
Patch foraging indifference point AUC0.30.50.70.90.50.70.6
Delay disc. indifference point, 0s delay1.82.03.4-0.1-1.81.51.5
Delay disc. indifference point, 16s delay0.91.01.3-1.1-1.20.81.0
Delay disc. indifference point, 2s delay1.01.13.4-0.9-1.80.30.4
Delay disc. indifference point, 24s delay1.21.32.8-1.6-1.70.00.1
Delay disc. indifference point, 4s delay0.60.61.2-0.2-0.60.91.1
Delay disc. indifference point, 8s delay0.20.20.7-0.8-0.50.00.1
Indifference point function ln k0.30.50.9-0.5-1.0-0.7-0.5
Indifference point function log k0.30.50.9-0.5-1.0-0.7-0.5
Patch foraging total patch changes 0 sec0.00.00.1-0.10.00.30.1
Patch foraging total patch changes 12 sec0.20.20.80.10.90.0-0.1
Patch foraging total patch changes 18 sec0.30.41.00.3-0.11.00.7
Patch foraging total patch changes 24 sec0.30.51.1-1.0-1.00.40.1
Patch foraging total patch changes 6 sec0.10.20.60.20.80.1-0.1
Patch foraging time to switch 0 sec0.51.13.51.01.90.00.0
Patch foraging water rate 0 sec0.30.71.11.0-0.30.81.0
Patch foraging water rate 12 sec0.51.02.3-1.3-1.50.3-0.0
Patch foraging water rate 18 sec0.00.00.1-0.1-0.30.20.1
Patch foraging water rate 24 sec2.43.47.30.0-2.71.61.9
Patch foraging water rate 6 sec1.42.05.7-1.3-2.40.80.5
Seeking ratio, delayed vs. immediate footshock1.31.63.7-1.3-1.90.60.8
Distance traveled before self-admin0.00.00.10.2-0.3-0.10.1
Distance traveled after self-admin1.21.52.8-1.7-0.8-1.1-1.1
Extensor digitorum longus weight0.31.32.60.51.3-1.6-0.9
Bone: elastic displacement0.30.40.7-0.10.8-0.6-0.7
Bone: elastic work1.31.73.2-1.8-0.5-1.3-1.3
Bone: endosteal estimation0.91.93.6-1.9-0.8-1.3-1.3
Bone: endosteal perimeter0.61.22.3-1.5-1.3-0.7-0.7
Epididymis fat weight0.10.30.7-0.4-0.8-0.5-0.2
Delta time in closed arm before/after self-admin0.90.91.6-1.3-0.7-0.9-0.7
Delta time in open arm before/after self-admin0.50.51.01.00.80.5-0.1
Diff in mean of infusions in LGA sessions0.81.02.21.00.10.91.5
Delay discount exponential model param0.60.71.21.11.1-0.4-0.6
Extinction: sum of active levers before priming3.84.26.9-2.2-0.3-2.6-2.2
Active lever presses in extinction session 64.54.47.7-1.11.4-2.8-2.6
Bone: final force1.32.04.1-2.0-1.2-1.2-1.0
Bone: final moment1.72.74.9-2.2-1.3-1.5-1.3
Food consumed during 24 hour testing period0.91.23.5-1.0-1.90.30.6
Glucose0.50.71.60.31.3-0.6-1.0
Heart weight0.30.40.6-0.6-0.70.50.6
Delay discount hyperbolic model param0.60.61.00.91.0-0.4-0.7
Intermittent access intake day 1-15 change0.81.62.6-1.6-0.9-1.3-1.1
Intermittent access intake escalation0.81.62.3-1.3-0.6-1.5-1.3
Intermittent access intake escalation 21.31.52.1-1.3-0.0-1.4-1.4
Intermitt. access day 1 inactive lever presses0.72.65.7-2.4-2.10.00.3
Intermitt. access day 15 inactive lever presses0.91.82.8-1.1-1.71.31.3
Intermitt. access escalation Index0.81.12.50.6-0.81.61.0
Intermittent access day 1 total infusions2.84.67.61.8-0.52.82.6
Intermittent access day 15 total infusions0.60.91.40.4-0.91.21.1
Intermittent access terminal intake (last 3 days)1.41.83.20.7-0.81.71.8
Intermittent access total infusions2.02.34.11.0-0.82.01.9
Intermittent access day 1 locomotion4.25.49.31.3-1.33.13.0
Intermittent access day 15 total locomotion0.91.62.40.4-1.21.51.5
Intermittent access total locomotion2.42.94.51.5-0.62.12.1
Intermittent access standard deviation1.02.04.6-2.1-1.8-0.2-0.4
Left kidney weight1.88.211.8-3.4-2.1-2.8-2.9
Right kidney weight2.411.114.1-3.8-1.8-3.7-3.6
Cocaine induced anxiety0.00.00.10.00.2-0.2-0.2
Post-drug Anxiety0.20.20.40.10.00.60.5
Baseline Anxiety0.70.81.5-0.3-0.81.21.1
Tail length3.413.222.0-4.7-3.4-3.2-3.1
Length with tail4.619.835.1-5.9-3.8-3.8-3.9
Length without tail2.37.512.3-3.5-2.3-2.3-2.6
Times rat made contact with spout0.60.70.90.71.0-0.8-0.9
Lifetime Intake1.31.62.71.1-0.31.71.5
Liver weight, left0.30.61.20.81.10.70.1
Liver weight, right0.10.20.50.70.5-0.2-0.3
Locomotor activity1.42.36.00.72.5-1.0-1.2
Locomotor testing distance1.01.75.20.92.3-0.6-0.7
Locomotor testing rearing0.71.32.91.71.50.30.3
Locomotion in novel chamber0.30.41.20.61.1-0.2-0.1
Locomotion in novel chamber post-restriction0.10.10.40.10.70.20.2
Fecal boli incidents, locomotor time 11.42.13.92.01.70.51.1
Change in fecal boli incidents, locomotor task1.51.42.4-0.21.6-1.3-1.3
Time >=10cm from walls, locomotor time 10.10.10.1-0.30.30.20.1
Bouts of movement, locomotor time 11.41.64.1-0.7-2.00.90.9
Total resting periods, locomotor time 10.91.02.6-0.6-1.60.60.9
Rest time, locomotor task time 10.91.21.41.21.20.61.2
Distance moved, locomotor task time 10.10.10.20.2-0.5-0.5-0.0
Vertical activity count, locomotor time 10.51.12.2-1.2-1.5-0.6-0.7
Time >=10cm from walls, locomotor time 20.81.11.61.30.61.01.3
Bouts of movement, locomotor time 20.10.20.4-0.3-0.60.50.0
Total resting periods, locomotor time 20.00.10.2-0.1-0.30.50.1
Rest time, locomotor task time 20.30.30.70.50.80.30.5
Distance moved, locomotor task time 20.20.30.60.4-0.80.00.5
Vertical activity count, locomotor time 20.60.82.5-0.9-1.6-0.2-0.1
Light reinforcement 10.20.40.60.3-0.60.70.8
Light reinforcement 21.11.63.71.90.71.11.1
Bone: marrow area0.92.03.7-1.9-0.6-1.4-1.4
Bone: maximum diameter0.81.52.7-1.6-0.8-1.2-1.1
Bone: maximum force2.03.56.8-2.6-1.8-1.4-1.4
Bone: maximum moment2.44.17.5-2.7-1.9-1.7-1.6
Mean time between licks in bursts0.30.81.8-0.2-1.30.80.9
Mean num. licks in bursts2.13.35.9-1.4-0.0-2.4-2.3
Cd content in liver0.10.10.30.10.5-0.10.1
Co content in liver0.60.72.20.71.5-0.2-0.0
Cu content in liver0.80.91.4-1.2-1.0-1.0-0.7
Fe content in liver0.30.41.00.71.0-0.00.3
K content in liver0.00.00.1-0.20.3-0.10.0
Mg content in liver0.60.71.80.71.4-0.4-0.3
Mn content in liver1.51.64.90.82.2-0.7-0.6
Na content in liver0.20.20.7-0.9-0.2-0.3-0.4
Rb content in liver0.40.41.00.30.30.71.0
Se content in liver2.63.17.12.72.20.20.4
Sr content in liver0.80.72.30.41.5-0.3-0.3
Zn content in liver1.01.12.11.51.50.10.4
Bone: minimum diameter1.62.85.5-2.3-2.2-0.9-0.6
Time in familiar zone, hab. session 11.91.93.9-0.60.4-2.0-1.7
Time in novel zone, hab. session 12.32.34.71.0-0.21.82.2
Total zone transitions, hab. session 10.40.61.20.1-1.10.90.6
Total locomotion distance, hab. session 10.40.61.4-1.2-0.70.6-0.3
Locomotion velocity, hab. session 10.20.30.8-0.9-0.20.4-0.6
Time in familiar zone, hab. session 22.12.23.3-1.11.4-1.8-1.4
Time in novel zone, hab. session 20.80.81.20.8-0.91.10.8
Total zone transitions, hab. session 22.22.84.12.0-0.32.01.8
Total locomotion distance, hab. session 20.70.91.90.3-0.51.41.2
Locomotion velocity, hab. session 20.50.71.40.4-0.31.21.0
Novel to familiar place preference ratio0.10.10.2-0.4-0.40.50.0
Novelty place preference0.10.10.3-0.3-0.30.50.2
Time in novel zone, NPP test0.20.20.5-0.1-0.30.70.3
Total zone transitions, NPP test0.30.51.80.2-1.30.1-0.1
Total locomotion distance, NPP test1.62.23.4-1.8-1.3-1.2-1.6
Locomotion velocity, NPP test1.62.33.8-1.9-1.1-1.3-1.6
Intraocular pressure0.20.30.40.50.30.60.6
Delta distance traveled before/after self-admin1.51.63.4-1.8-0.9-0.9-1.2
Delta ambulatory time before/after self-admin1.21.53.5-1.9-1.0-0.7-1.0
Parametrial fat weight1.22.94.40.12.1-1.8-2.0
Pavlov. Cond. lever latency0.40.51.3-0.50.4-1.2-0.6
Pavlov. Cond. magazine entry latency0.20.30.80.90.30.50.4
Pavlov. Cond. change in total contacts1.61.73.00.8-1.01.71.5
Pavlov. Cond. index score0.40.50.80.9-0.00.90.6
Pavlov. Cond. latency score0.40.51.00.8-0.31.00.7
Pavlov. Cond. lever contacts0.30.30.90.3-0.31.00.4
Pavlov. Cond. magazine entry number0.30.40.5-0.70.2-0.7-0.6
Pavlov. Cond. intertrial magazine entries0.50.61.51.20.50.60.4
Pavlov. Cond. lever-magazine prob. diff.0.60.71.11.0-0.01.00.7
Pavlov. Cond. response bias0.10.20.40.60.30.3-0.1
Pavlov. Cond. lever latency2.93.98.12.82.30.91.2
Pavlov. Cond. magazine entry latency1.31.64.3-2.1-0.8-0.7-0.9
Pavlov. Cond. change in total contacts3.35.411.9-3.4-2.6-1.1-1.3
Pavlov. Cond. index score3.04.19.3-3.0-1.9-1.2-1.4
Pavlov. Cond. latency score2.53.37.9-2.8-1.8-0.9-1.2
Pavlov. Cond. lever contacts3.14.38.6-2.9-2.4-1.0-1.2
Pavlov. Cond. magazine entry number2.53.06.52.61.41.21.5
Pavlov. Cond. intertrial magazine entries0.60.91.61.31.00.60.7
Pavlov. Cond. lever-magazine prob. diff.2.93.88.8-3.0-1.7-1.2-1.5
Pavlov. Cond. response bias3.75.010.1-3.2-2.7-1.0-1.3
Time in closed arm before self-admin1.82.34.51.4-0.32.11.6
Time in closed arm after self-admin0.90.91.3-0.2-1.11.11.1
Time in open arm before self-admin4.34.77.4-2.7-0.2-2.6-2.2
Time in open arm after self-admin1.31.52.8-1.00.4-1.4-1.7
Bone: periosteal estimation1.63.35.1-2.3-1.1-1.9-1.8
Bone: periosteal perimeter0.81.41.9-1.4-0.4-1.4-1.3
Bone: post-yield work1.31.94.7-1.7-2.2-0.0-0.0
Progressive ratio test 1 active lever presses0.91.11.90.2-1.11.41.2
Progressive ratio test 1 breakpoint1.01.22.10.1-1.11.41.2
Progressive ratio test 1 inactive lever presses3.24.67.4-0.1-2.32.72.4
Progressive ratio test 2 active lever presses0.20.30.50.7-0.20.40.6
Progressive ratio test 2 breakpoint0.30.40.70.8-0.10.50.7
Progressive ratio test 2 inactive lever presses1.93.04.3-0.2-2.11.92.1
Incentive Sensitization - Responses0.30.41.11.10.10.10.6
Incentive Sensitization - Breakpoint0.30.41.01.00.00.10.6
Sum of active levers in priming session hrs 5-60.10.10.30.40.3-0.50.1
Progressive ratio0.20.30.80.10.40.90.5
Food seeking constrained by brief footshock1.01.33.5-1.9-0.5-0.7-0.9
Seeking ratio, punishment vs. effort0.30.51.0-0.9-1.0-0.3-0.2
Retroperitoneal fat weight1.35.59.71.03.1-2.2-2.6
Reaction time number correct0.00.10.1-0.1-0.2-0.3-0.4
Reaction time mean minus median0.20.50.8-0.9-0.4-0.7-0.7
Reaction time mean minus median AUC0.41.11.7-1.3-0.3-1.1-1.2
Reaction time num false alarms0.71.01.31.01.10.90.9
Reaction time num false alarms AUC0.91.42.81.11.70.90.9
Reaction time trials correct on left0.00.10.1-0.1-0.2-0.3-0.4
Reaction time trials on left0.10.10.2-0.1-0.1-0.4-0.4
Reaction time mean0.20.30.5-0.7-0.7-0.3-0.3
Reaction time mean AUC0.10.20.4-0.6-0.4-0.3-0.4
Median of all reaction times0.10.10.3-0.3-0.60.20.0
Reaction time omissions0.30.40.70.10.6-0.7-0.8
Reaction time false alarm rate0.91.22.00.91.40.91.0
Reaction time premature initiation rate0.50.71.5-0.1-0.51.21.1
Reaction time premature initiations0.30.61.1-0.1-0.71.00.9
Std. dev. reaction times0.30.61.2-1.1-0.8-0.6-0.5
Reaction time trials completed0.10.10.2-0.1-0.1-0.4-0.4
Reaction time trials AUC0.10.20.4-0.00.2-0.6-0.6
Run reversals in cocaine runway, females0.50.51.4-0.8-1.2-0.1-0.1
Run reversals in cocaine runway, males3.13.25.0-0.22.2-1.9-2.0
Latency to leave start box in cocaine runway0.60.72.2-0.2-1.50.50.5
Latency to leave start box in cocaine runway, F0.70.81.7-0.0-1.30.80.9
Latency to leave start box in cocaine runway, M0.10.10.40.2-0.60.20.1
Std. dev. time between licks in bursts1.31.83.2-0.4-1.01.81.7
Total sessions with >9 infusions0.50.61.71.30.80.40.3
Short access day 1 total inactive lever presses3.24.27.6-0.3-2.82.12.2
Short access day 10 total inactive lever presses1.12.77.1-1.3-2.71.00.9
Short access day 1 total infusions0.20.20.40.4-0.30.50.6
Short access day 10 total infusions0.30.40.60.80.20.80.5
Short access total infusions0.50.61.31.10.60.70.6
Short access day 1 locomotion0.50.61.01.00.40.71.0
Short access day 10 total locomotion0.61.11.8-0.3-1.21.41.1
Short access total locomotion1.31.62.71.20.31.71.4
One hour access (0.3 mA shock)1.61.83.2-0.6-1.81.51.2
Compulsive drug intake0.91.02.10.1-0.91.51.0
One hour access (shock baseline)0.30.40.70.0-0.70.80.8
Social response proportion0.70.81.5-1.2-0.9-1.0-0.3
Social responses0.10.10.3-0.4-0.1-0.60.0
Social time1.11.53.5-1.4-1.9-0.6-0.2
Soleus weight0.10.20.60.20.8-0.4-0.3
Bone: stiffness1.01.73.2-1.8-1.5-0.9-0.8
Tibialis anterior weight0.51.83.20.21.3-1.8-1.4
Time to tail flick, vehicle, before self-admin0.40.41.00.5-0.21.00.5
Time to tail flick, vehicle, after self-admin0.10.10.2-0.50.30.2-0.1
Time to tail flick, test, before self-admin1.71.83.70.1-1.91.31.3
Time to tail flick, test, after self-admin0.10.10.20.20.10.40.3
Delta time to tail flick, vehicle, before/after SA0.30.20.7-0.8-0.1-0.3-0.4
Delta time to tail flick, test, before/after SA1.61.64.90.52.2-0.7-0.9
Tibia length2.26.110.4-3.2-2.7-1.8-1.9
Ambulatory time before self-admin0.00.10.2-0.0-0.5-0.10.3
Ambulatory time after self-admin2.22.65.6-2.4-1.6-1.1-1.0
Bone: tissue strength2.02.14.4-1.9-2.10.20.1
Total heroin consumption0.50.61.5-0.4-1.20.40.8
Bone: trabecular number1.21.93.5-1.9-1.7-0.7-1.0
Bone: trabecular spacing0.71.02.2-0.41.5-0.9-0.9
Bone: trabecular thickness0.20.30.9-0.0-1.00.3-0.0
Bone: trabecular tissue density2.33.49.51.43.1-0.9-1.2
Water consumed over 24 hours0.60.81.0-0.9-0.6-1.0-1.0
Number of responses in last shaping day0.10.10.5-0.1-0.70.20.1