Tut4

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc mRNA stability Tut4 0.04 0.03 4.1e-07 0.04 0.03 0.03 0.03 2.6e-06 7.6e-06 1.4e-05 9.0e-06
2 PL intron excision ratio chr5_128432435_128450844 0.02 0.02 8.7e-03 0.02 0.02 0.01 0.02 3.3e-03 5.4e-03 2.2e-02 3.0e-03
3 Adipose gene expression Tut4 0.08 0.05 4.6e-07 0.04 0.03 0.03 0.03 2.3e-05 2.0e-04 6.4e-04 1.2e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.61.01.11.0-1.1-1.0
Area under the delay curve0.00.00.0-0.10.1-0.2
BMI with tail1.55.36.5-2.22.12.6
BMI without tail0.82.52.7-1.61.51.7
Body weight0.83.74.2-1.91.82.1
Weight adjusted by age0.10.20.2-0.40.40.5
Bone surface0.20.30.50.5-0.5-0.7
Bone volume0.00.00.00.1-0.2-0.2
Breakpoint value in progressive ratio session0.10.10.20.4-0.2-0.2
Number of licking bursts0.10.10.30.10.20.5
Context. condit. distance diff. score0.50.60.80.9-0.8-0.5
Locomotion velocity, session 13.94.24.72.2-2.2-1.8
Locomotion distance, session 10.10.10.30.5-0.4-0.1
Locomotion velocity, session 23.84.45.42.3-2.2-1.8
Locomotion distance, session 20.91.21.6-1.11.30.9
Locomotion velocity, session 30.70.91.01.0-0.9-0.9
Locomotion distance, session 30.30.30.5-0.70.60.2
Stereotopy head waving bouts, day 30.10.10.20.5-0.30.0
Stereotopy head waving duration, day 30.60.81.21.1-1.0-0.3
Locomotion velocity, session 70.10.10.1-0.40.3-0.3
Locomotion distance, session 70.40.50.8-0.80.9-0.3
Stereotopy head waving bouts, day 71.92.22.71.6-1.5-1.2
Stereotopy head waving duration, day 72.02.43.11.7-1.6-1.2
Locomotion velocity, session 81.92.32.51.4-1.5-1.6
Locomotion distance, session 80.00.00.00.10.0-0.1
Degree of sensitization distance0.10.10.3-0.30.50.1
Degree of sensitization stereotypy0.91.01.31.2-1.0-0.8
Conditioned locomotion0.10.10.20.4-0.20.4
Cocaine response after cond. corrected2.83.44.3-2.12.01.5
Cocaine response after cond. not corrected3.33.94.5-2.12.01.8
Cocaine response before conditioning0.00.00.10.0-0.10.3
Saline control response0.30.50.8-0.80.9-0.1
Bone: connectivity density1.01.52.01.1-1.1-1.4
Bone: cortical apparent density2.33.23.51.9-1.9-1.6
Bone: cortical area1.42.22.5-1.61.51.3
Bone: cortical porosity0.70.71.21.1-1.0-0.0
Bone: cortical porosity1.11.21.91.4-1.3-0.4
Bone: cortical thickness2.64.44.9-2.02.02.2
Bone: cortical thickness1.51.82.6-1.21.21.6
Bone: cortical tissue density2.63.64.02.0-2.0-1.6
Condit. Reinf. active minus inactive responses0.60.60.7-0.70.80.8
Condit. Reinf. active-inactive response ratio0.80.80.9-0.80.90.9
Condit. Reinf. active responses1.11.41.5-1.11.21.2
Condit. Reinf. inactive responses0.10.10.2-0.40.40.2
Incentive salience index mean1.72.12.5-1.31.51.6
Condit. Reinf. lever presses1.72.42.9-1.41.61.7
Condit. Reinf. active minus inactive responses0.70.91.4-1.21.10.4
Condit. Reinf. active-inactive response ratio0.20.20.3-0.60.50.0
Condit. Reinf. active responses0.50.61.0-1.00.80.5
Condit. Reinf. inactive responses0.30.40.5-0.70.50.7
Condit. Reinf. lever presses0.10.20.4-0.30.3-0.6
Condit. Reinf. lever reinforcers received0.40.61.0-1.00.80.3
Conditioned reinforcement - actives2.33.94.9-1.92.21.8
Conditioned reinforcement - inactives0.10.10.1-0.00.30.4
Conditioned locomotion0.91.21.6-1.01.31.0
Patch foraging indifference point 0 sec0.40.80.9-1.00.80.8
Patch foraging indifference point AUC0.20.30.40.6-0.5-0.5
Delay disc. indifference point, 0s delay0.20.20.40.3-0.2-0.6
Delay disc. indifference point, 16s delay1.11.31.4-1.21.21.0
Delay disc. indifference point, 2s delay0.10.10.10.2-0.2-0.3
Delay disc. indifference point, 24s delay0.20.20.20.3-0.4-0.5
Delay disc. indifference point, 4s delay0.00.00.1-0.20.30.1
Delay disc. indifference point, 8s delay0.00.00.0-0.20.2-0.1
Indifference point function ln k0.40.70.8-0.90.80.8
Indifference point function log k0.40.70.8-0.90.80.8
Patch foraging total patch changes 0 sec0.30.60.7-0.80.70.8
Patch foraging total patch changes 12 sec1.01.31.41.2-1.1-1.2
Patch foraging total patch changes 18 sec0.20.30.4-0.50.60.6
Patch foraging total patch changes 24 sec0.81.31.5-1.21.01.2
Patch foraging total patch changes 6 sec0.20.30.5-0.70.60.3
Patch foraging time to switch 0 sec1.12.32.81.7-1.6-1.3
Patch foraging water rate 0 sec1.63.33.6-1.91.71.8
Patch foraging water rate 12 sec2.34.75.9-2.42.12.0
Patch foraging water rate 18 sec0.00.00.10.1-0.3-0.0
Patch foraging water rate 24 sec0.00.00.0-0.1-0.00.2
Patch foraging water rate 6 sec1.31.92.3-1.51.31.4
Seeking ratio, delayed vs. immediate footshock2.93.53.8-1.72.01.9
Distance traveled before self-admin0.00.00.1-0.00.00.3
Distance traveled after self-admin0.60.81.0-0.80.81.0
Extensor digitorum longus weight0.93.65.7-1.61.72.4
Bone: elastic displacement0.10.10.10.3-0.30.4
Bone: elastic work0.10.10.2-0.40.20.5
Bone: endosteal estimation0.10.20.30.3-0.4-0.5
Bone: endosteal perimeter0.10.30.70.2-0.2-0.8
Epididymis fat weight0.00.10.30.1-0.2-0.5
Delta time in closed arm before/after self-admin0.00.00.0-0.10.20.0
Delta time in open arm before/after self-admin0.10.10.1-0.20.40.3
Diff in mean of infusions in LGA sessions0.10.10.1-0.30.30.0
Delay discount exponential model param0.00.00.00.1-0.10.2
Extinction: sum of active levers before priming0.10.10.20.1-0.00.4
Active lever presses in extinction session 61.71.71.8-1.31.31.2
Bone: final force0.00.00.1-0.20.0-0.3
Bone: final moment0.00.10.1-0.40.2-0.1
Food consumed during 24 hour testing period1.01.42.1-1.41.40.3
Glucose0.20.40.5-0.70.70.4
Heart weight1.11.72.6-1.21.01.6
Delay discount hyperbolic model param0.00.00.10.0-0.00.3
Intermittent access intake day 1-15 change0.40.91.1-0.81.01.0
Intermittent access intake escalation0.40.81.0-0.71.01.0
Intermittent access intake escalation 20.20.20.3-0.30.50.5
Intermitt. access day 1 inactive lever presses0.62.12.4-1.41.51.4
Intermitt. access day 15 inactive lever presses0.30.61.0-0.40.81.0
Intermitt. access escalation Index0.10.10.1-0.1-0.4-0.3
Intermittent access day 1 total infusions0.10.10.30.5-0.3-0.0
Intermittent access day 15 total infusions0.20.30.6-0.10.50.8
Intermittent access terminal intake (last 3 days)0.00.10.10.10.20.4
Intermittent access total infusions0.00.00.10.3-0.10.1
Intermittent access day 1 locomotion0.00.00.10.3-0.20.0
Intermittent access day 15 total locomotion0.20.30.4-0.40.70.5
Intermittent access total locomotion0.00.00.10.20.00.2
Intermittent access standard deviation1.63.33.5-1.71.91.9
Left kidney weight5.826.827.4-5.25.25.1
Right kidney weight3.415.416.1-3.93.84.0
Cocaine induced anxiety0.40.50.7-0.60.60.8
Post-drug Anxiety0.60.70.7-0.80.80.8
Baseline Anxiety0.10.10.2-0.40.40.1
Tail length0.00.00.00.2-0.1-0.1
Length with tail0.20.70.9-0.91.00.8
Length without tail1.75.56.2-2.52.52.1
Times rat made contact with spout0.80.91.7-1.01.30.5
Lifetime Intake0.00.00.00.1-0.10.0
Liver weight, left0.00.10.20.1-0.1-0.4
Liver weight, right0.10.10.30.2-0.1-0.6
Locomotor activity0.20.30.5-0.70.70.0
Locomotor testing distance0.61.01.5-1.21.20.5
Locomotor testing rearing0.40.91.4-1.21.10.2
Locomotion in novel chamber4.05.15.6-2.42.32.1
Locomotion in novel chamber post-restriction0.10.10.30.00.10.6
Fecal boli incidents, locomotor time 10.10.10.2-0.40.30.0
Change in fecal boli incidents, locomotor task0.30.30.40.6-0.5-0.5
Time >=10cm from walls, locomotor time 11.61.72.11.4-1.4-0.9
Bouts of movement, locomotor time 10.70.81.11.0-0.7-0.9
Total resting periods, locomotor time 10.60.60.90.9-0.6-0.8
Rest time, locomotor task time 10.00.00.10.1-0.0-0.3
Distance moved, locomotor task time 10.20.30.50.7-0.7-0.3
Vertical activity count, locomotor time 10.10.30.4-0.50.50.6
Time >=10cm from walls, locomotor time 20.00.00.1-0.0-0.4-0.1
Bouts of movement, locomotor time 20.50.81.21.1-0.9-0.6
Total resting periods, locomotor time 20.40.71.11.0-0.8-0.6
Rest time, locomotor task time 20.10.10.20.3-0.1-0.4
Distance moved, locomotor task time 20.50.60.8-0.70.70.9
Vertical activity count, locomotor time 21.62.22.6-1.41.61.5
Light reinforcement 10.10.20.4-0.30.10.6
Light reinforcement 21.01.62.1-1.11.11.4
Bone: marrow area0.00.10.20.2-0.3-0.4
Bone: maximum diameter0.10.10.2-0.30.30.4
Bone: maximum force0.00.00.1-0.30.1-0.2
Bone: maximum moment0.10.10.2-0.40.3-0.0
Mean time between licks in bursts0.61.52.70.9-1.0-1.6
Mean num. licks in bursts0.50.81.2-1.11.00.4
Cd content in liver0.60.60.80.7-0.7-0.9
Co content in liver0.00.00.0-0.10.1-0.2
Cu content in liver0.20.30.5-0.40.3-0.7
Fe content in liver0.40.50.9-0.50.40.9
K content in liver0.30.30.5-0.30.4-0.7
Mg content in liver2.02.02.9-1.61.70.6
Mn content in liver0.30.30.40.6-0.6-0.6
Na content in liver0.30.40.70.5-0.4-0.8
Rb content in liver0.10.10.1-0.30.3-0.2
Se content in liver0.10.10.2-0.10.1-0.5
Sr content in liver0.00.00.00.1-0.10.0
Zn content in liver0.40.41.20.1-0.1-1.1
Bone: minimum diameter0.71.31.8-1.41.30.5
Time in familiar zone, hab. session 10.40.40.70.5-0.8-0.6
Time in novel zone, hab. session 10.00.00.10.20.2-0.3
Total zone transitions, hab. session 10.20.30.50.7-0.6-0.1
Total locomotion distance, hab. session 10.10.20.5-0.0-0.00.7
Locomotion velocity, hab. session 10.10.10.30.1-0.10.5
Time in familiar zone, hab. session 20.20.20.7-0.0-0.0-0.8
Time in novel zone, hab. session 20.10.10.10.1-0.20.4
Total zone transitions, hab. session 20.10.10.2-0.40.40.0
Total locomotion distance, hab. session 20.40.50.7-0.90.70.6
Locomotion velocity, hab. session 20.50.60.7-0.80.70.8
Novel to familiar place preference ratio1.81.92.5-1.51.61.1
Novelty place preference0.91.01.3-1.01.20.8
Time in novel zone, NPP test0.70.81.0-0.91.00.6
Total zone transitions, NPP test0.50.71.1-0.70.71.1
Total locomotion distance, NPP test0.81.11.5-0.90.91.2
Locomotion velocity, NPP test1.31.82.4-1.21.21.6
Intraocular pressure0.30.50.6-0.80.70.5
Delta distance traveled before/after self-admin1.71.82.1-1.41.41.2
Delta ambulatory time before/after self-admin1.01.21.4-1.21.11.0
Parametrial fat weight0.00.00.10.0-0.3-0.1
Pavlov. Cond. lever latency1.62.03.01.1-1.3-1.7
Pavlov. Cond. magazine entry latency0.20.20.30.5-0.4-0.5
Pavlov. Cond. change in total contacts0.00.00.00.20.10.2
Pavlov. Cond. index score0.30.40.6-0.40.60.8
Pavlov. Cond. latency score0.40.50.8-0.50.80.9
Pavlov. Cond. lever contacts1.21.42.2-0.81.11.5
Pavlov. Cond. magazine entry number0.20.30.4-0.60.50.5
Pavlov. Cond. intertrial magazine entries1.31.52.2-1.51.30.8
Pavlov. Cond. lever-magazine prob. diff.0.50.60.8-0.60.80.9
Pavlov. Cond. response bias0.10.10.20.00.20.4
Pavlov. Cond. lever latency0.60.81.31.2-0.90.2
Pavlov. Cond. magazine entry latency0.50.61.7-0.10.1-1.3
Pavlov. Cond. change in total contacts0.30.60.8-0.90.8-0.5
Pavlov. Cond. index score0.40.60.9-0.70.6-1.0
Pavlov. Cond. latency score0.40.60.8-0.70.6-0.9
Pavlov. Cond. lever contacts0.40.61.0-1.00.8-0.3
Pavlov. Cond. magazine entry number1.01.23.3-0.40.41.8
Pavlov. Cond. intertrial magazine entries0.30.40.60.8-0.70.1
Pavlov. Cond. lever-magazine prob. diff.0.50.61.0-0.70.6-1.0
Pavlov. Cond. response bias0.30.40.8-0.60.4-0.9
Time in closed arm before self-admin0.40.50.60.8-0.7-0.7
Time in closed arm after self-admin0.20.20.30.4-0.5-0.4
Time in open arm before self-admin0.10.10.1-0.40.20.0
Time in open arm after self-admin0.80.91.1-0.91.00.9
Bone: periosteal estimation0.30.60.7-0.80.70.7
Bone: periosteal perimeter0.10.20.3-0.50.40.1
Bone: post-yield work0.00.10.10.2-0.2-0.3
Progressive ratio test 1 active lever presses0.60.81.1-0.70.81.1
Progressive ratio test 1 breakpoint0.60.81.1-0.70.81.1
Progressive ratio test 1 inactive lever presses0.30.40.7-0.40.60.8
Progressive ratio test 2 active lever presses0.50.51.0-0.40.71.0
Progressive ratio test 2 breakpoint0.50.51.0-0.40.61.0
Progressive ratio test 2 inactive lever presses0.10.10.2-0.10.30.5
Incentive Sensitization - Responses0.00.00.00.10.10.2
Incentive Sensitization - Breakpoint0.00.00.10.00.10.3
Sum of active levers in priming session hrs 5-60.10.10.20.00.10.4
Progressive ratio0.20.30.5-0.60.70.4
Food seeking constrained by brief footshock3.34.14.62.1-2.0-1.9
Seeking ratio, punishment vs. effort3.04.34.72.2-2.2-1.9
Retroperitoneal fat weight0.10.30.40.5-0.6-0.5
Reaction time number correct0.10.20.30.4-0.50.0
Reaction time mean minus median0.10.20.3-0.40.5-0.5
Reaction time mean minus median AUC0.10.20.3-0.30.3-0.6
Reaction time num false alarms1.52.12.8-1.61.71.0
Reaction time num false alarms AUC2.43.74.8-2.12.21.4
Reaction time trials correct on left0.10.20.30.4-0.50.0
Reaction time trials on left0.10.10.20.4-0.50.0
Reaction time mean0.10.20.50.00.2-0.7
Reaction time mean AUC0.20.30.80.3-0.1-0.9
Median of all reaction times0.20.20.60.3-0.1-0.8
Reaction time omissions0.50.71.2-1.01.10.1
Reaction time false alarm rate2.94.05.3-2.22.31.4
Reaction time premature initiation rate0.00.10.10.2-0.1-0.4
Reaction time premature initiations0.10.20.20.5-0.4-0.5
Std. dev. reaction times0.20.40.6-0.60.8-0.4
Reaction time trials completed0.10.10.20.4-0.50.0
Reaction time trials AUC0.00.00.10.1-0.30.2
Run reversals in cocaine runway, females0.10.10.10.2-0.1-0.3
Run reversals in cocaine runway, males2.62.63.0-1.71.71.4
Latency to leave start box in cocaine runway0.70.81.3-0.70.81.2
Latency to leave start box in cocaine runway, F1.21.42.3-0.91.01.5
Latency to leave start box in cocaine runway, M0.00.00.00.1-0.1-0.2
Std. dev. time between licks in bursts1.92.63.71.4-1.5-1.9
Total sessions with >9 infusions0.00.00.00.00.0-0.1
Short access day 1 total inactive lever presses1.72.22.5-1.51.41.6
Short access day 10 total inactive lever presses0.10.30.3-0.50.50.5
Short access day 1 total infusions0.00.00.0-0.20.00.1
Short access day 10 total infusions0.00.10.2-0.10.10.4
Short access total infusions0.00.00.10.1-0.2-0.2
Short access day 1 locomotion1.21.51.8-1.21.31.1
Short access day 10 total locomotion0.40.70.7-0.80.80.8
Short access total locomotion0.00.10.10.3-0.2-0.2
One hour access (0.3 mA shock)0.10.10.30.5-0.2-0.1
Compulsive drug intake0.81.01.20.9-1.1-0.9
One hour access (shock baseline)1.01.51.7-1.01.31.3
Social response proportion0.10.10.30.3-0.2-0.5
Social responses1.01.31.81.0-1.1-1.3
Social time0.20.20.5-0.70.30.1
Soleus weight3.08.79.7-2.82.93.1
Bone: stiffness0.00.00.0-0.10.0-0.2
Tibialis anterior weight2.99.816.0-2.62.64.0
Time to tail flick, vehicle, before self-admin2.22.32.8-1.41.41.7
Time to tail flick, vehicle, after self-admin0.40.50.8-0.90.50.8
Time to tail flick, test, before self-admin1.81.93.2-1.21.01.8
Time to tail flick, test, after self-admin0.80.81.0-1.00.71.0
Delta time to tail flick, vehicle, before/after SA0.00.00.0-0.1-0.1-0.0
Delta time to tail flick, test, before/after SA0.10.10.30.0-0.1-0.5
Tibia length0.10.40.6-0.70.60.5
Ambulatory time before self-admin0.00.00.00.1-0.10.1
Ambulatory time after self-admin0.40.40.6-0.60.50.7
Bone: tissue strength0.50.51.20.5-0.5-1.1
Total heroin consumption0.50.60.60.8-0.8-0.7
Bone: trabecular number0.71.11.40.9-1.1-1.2
Bone: trabecular spacing1.01.41.9-1.11.01.4
Bone: trabecular thickness0.40.50.90.6-0.5-0.9
Bone: trabecular tissue density0.40.60.91.0-0.9-0.4
Water consumed over 24 hours1.31.72.5-1.41.60.9
Number of responses in last shaping day3.03.33.8-2.01.81.7