Tuba1c

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression Tuba1c 0.03 0.03 5.4e-04 0.02 0.03 0.03 0.03 1.1e-03 2.2e-04 5.0e-04 3.8e-04
2 PL gene expression Tuba1c 0.03 0.03 5.4e-04 0.01 0.02 0.02 0.01 1.0e-02 4.2e-03 4.8e-03 1.0e-02
3 NAcc intron excision ratio chr7_130118788_130164148 0.05 0.04 2.5e-06 0.04 0.05 0.04 0.04 9.5e-06 1.6e-06 6.4e-06 7.7e-06
4 Liver gene expression Tuba1c 0.03 0.03 4.2e-03 0.01 0.01 0.01 0.01 9.5e-03 1.2e-02 6.4e-02 2.1e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density10.417.418.0-4.2-4.2-4.2-4.0
Area under the delay curve0.90.91.1-1.0-1.0-1.0-0.9
BMI with tail4.614.916.9-3.8-3.8-3.7-4.1
BMI without tail0.00.10.30.10.10.2-0.5
Body weight6.527.130.4-5.2-5.1-5.0-5.5
Weight adjusted by age2.22.53.3-1.5-1.5-1.5-1.8
Bone surface12.221.522.2-4.7-4.7-4.7-4.5
Bone volume9.015.416.0-4.0-4.0-4.0-3.7
Breakpoint value in progressive ratio session0.30.30.3-0.5-0.5-0.5-0.6
Number of licking bursts0.40.40.70.70.70.80.1
Context. condit. distance diff. score0.30.30.6-0.5-0.5-0.5-0.8
Locomotion velocity, session 11.21.31.81.11.11.01.3
Locomotion distance, session 13.24.15.71.91.91.82.4
Locomotion velocity, session 20.40.51.20.50.50.51.1
Locomotion distance, session 22.73.75.41.81.81.72.3
Locomotion velocity, session 34.24.95.42.22.22.22.3
Locomotion distance, session 35.35.85.92.42.42.42.4
Stereotopy head waving bouts, day 31.01.21.4-1.2-1.1-1.1-0.8
Stereotopy head waving duration, day 30.50.60.7-0.8-0.8-0.8-0.2
Locomotion velocity, session 70.30.30.30.60.60.50.4
Locomotion distance, session 71.72.12.51.61.61.61.1
Stereotopy head waving bouts, day 70.91.01.1-1.1-1.0-1.0-0.9
Stereotopy head waving duration, day 71.21.41.6-1.3-1.2-1.2-1.1
Locomotion velocity, session 80.00.00.1-0.0-0.1-0.00.3
Locomotion distance, session 81.21.82.11.31.31.31.4
Degree of sensitization distance0.60.60.9-0.7-0.7-0.7-0.9
Degree of sensitization stereotypy0.20.20.2-0.4-0.4-0.3-0.5
Conditioned locomotion0.00.00.0-0.2-0.2-0.20.0
Cocaine response after cond. corrected0.00.00.10.10.00.00.2
Cocaine response after cond. not corrected0.60.60.80.80.80.80.9
Cocaine response before conditioning3.44.14.22.12.12.02.0
Saline control response0.10.20.2-0.4-0.4-0.4-0.4
Bone: connectivity density7.511.812.3-3.5-3.5-3.5-3.2
Bone: cortical apparent density0.30.30.40.60.60.60.4
Bone: cortical area9.914.915.8-3.9-3.8-3.8-4.0
Bone: cortical porosity0.80.81.20.90.90.81.1
Bone: cortical porosity1.21.31.71.11.11.01.3
Bone: cortical thickness3.55.76.2-2.4-2.4-2.3-2.5
Bone: cortical thickness0.20.20.5-0.3-0.3-0.2-0.7
Bone: cortical tissue density0.40.50.50.70.70.70.6
Condit. Reinf. active minus inactive responses0.10.10.40.20.20.20.6
Condit. Reinf. active-inactive response ratio0.20.20.3-0.5-0.5-0.6-0.1
Condit. Reinf. active responses0.70.91.50.80.80.81.2
Condit. Reinf. inactive responses2.93.43.51.81.81.91.8
Incentive salience index mean0.00.00.0-0.1-0.1-0.10.0
Condit. Reinf. lever presses0.10.10.2-0.4-0.4-0.3-0.3
Condit. Reinf. active minus inactive responses0.00.00.00.10.10.1-0.1
Condit. Reinf. active-inactive response ratio0.30.30.30.60.60.60.5
Condit. Reinf. active responses0.10.20.20.50.50.50.2
Condit. Reinf. inactive responses0.50.60.80.90.90.80.6
Condit. Reinf. lever presses0.00.00.10.00.0-0.0-0.3
Condit. Reinf. lever reinforcers received0.40.60.70.90.90.80.5
Conditioned reinforcement - actives1.61.61.81.31.31.41.1
Conditioned reinforcement - inactives2.22.42.71.51.61.61.5
Conditioned locomotion0.30.40.50.70.70.70.4
Patch foraging indifference point 0 sec2.33.63.91.91.92.01.7
Patch foraging indifference point AUC0.20.20.40.50.60.60.2
Delay disc. indifference point, 0s delay1.11.21.4-1.2-1.2-1.2-0.9
Delay disc. indifference point, 16s delay0.91.01.1-1.0-1.0-0.9-1.0
Delay disc. indifference point, 2s delay1.41.51.7-1.3-1.3-1.3-1.0
Delay disc. indifference point, 24s delay1.51.51.8-1.2-1.2-1.1-1.3
Delay disc. indifference point, 4s delay0.20.20.3-0.5-0.5-0.5-0.4
Delay disc. indifference point, 8s delay2.52.62.8-1.7-1.6-1.6-1.6
Indifference point function ln k3.85.35.9-2.4-2.4-2.4-2.0
Indifference point function log k3.85.35.9-2.4-2.4-2.4-2.0
Patch foraging total patch changes 0 sec2.13.43.81.91.91.91.7
Patch foraging total patch changes 12 sec2.12.73.31.71.71.81.2
Patch foraging total patch changes 18 sec4.15.35.92.42.42.42.0
Patch foraging total patch changes 24 sec2.12.63.01.61.71.71.3
Patch foraging total patch changes 6 sec2.53.74.22.02.02.11.6
Patch foraging time to switch 0 sec2.33.53.71.91.91.91.8
Patch foraging water rate 0 sec2.84.54.8-2.2-2.2-2.1-2.0
Patch foraging water rate 12 sec3.65.55.9-2.4-2.4-2.4-2.2
Patch foraging water rate 18 sec0.30.40.5-0.6-0.6-0.6-0.7
Patch foraging water rate 24 sec3.24.44.6-2.1-2.1-2.2-2.0
Patch foraging water rate 6 sec3.65.35.6-2.4-2.4-2.4-2.1
Seeking ratio, delayed vs. immediate footshock0.30.30.3-0.6-0.6-0.5-0.5
Distance traveled before self-admin1.21.31.31.11.11.11.1
Distance traveled after self-admin0.20.30.50.50.40.40.7
Extensor digitorum longus weight4.316.921.4-4.0-4.0-3.8-4.6
Bone: elastic displacement4.75.36.72.32.22.12.6
Bone: elastic work0.00.00.1-0.0-0.1-0.20.4
Bone: endosteal estimation8.017.517.8-4.2-4.2-4.2-4.1
Bone: endosteal perimeter7.315.017.5-3.8-3.8-3.7-4.2
Epididymis fat weight0.20.40.4-0.6-0.6-0.6-0.6
Delta time in closed arm before/after self-admin0.30.20.3-0.5-0.5-0.5-0.4
Delta time in open arm before/after self-admin4.74.55.02.12.12.12.2
Diff in mean of infusions in LGA sessions1.61.71.9-1.4-1.4-1.4-1.1
Delay discount exponential model param0.80.90.91.01.00.90.9
Extinction: sum of active levers before priming0.50.50.6-0.7-0.7-0.8-0.5
Active lever presses in extinction session 60.40.40.5-0.7-0.7-0.7-0.5
Bone: final force10.316.617.3-4.2-4.2-4.1-3.8
Bone: final moment10.817.518.6-4.3-4.3-4.3-3.8
Food consumed during 24 hour testing period1.72.12.2-1.5-1.4-1.5-1.4
Glucose0.10.20.6-0.2-0.2-0.1-0.8
Heart weight0.00.10.1-0.3-0.3-0.3-0.1
Delay discount hyperbolic model param0.80.80.91.01.00.90.8
Intermittent access intake day 1-15 change1.41.41.71.31.31.30.7
Intermittent access intake escalation1.01.01.21.11.11.10.5
Intermittent access intake escalation 21.61.61.91.31.41.40.8
Intermitt. access day 1 inactive lever presses2.62.83.21.71.61.61.8
Intermitt. access day 15 inactive lever presses1.31.41.41.21.21.21.2
Intermitt. access escalation Index0.20.20.20.50.50.40.2
Intermittent access day 1 total infusions1.21.41.41.21.21.21.1
Intermittent access day 15 total infusions2.62.93.51.81.91.91.2
Intermittent access terminal intake (last 3 days)2.93.23.71.91.91.91.4
Intermittent access total infusions2.62.93.41.81.81.81.3
Intermittent access day 1 locomotion0.80.80.91.00.90.90.8
Intermittent access day 15 total locomotion1.51.62.01.41.41.40.7
Intermittent access total locomotion3.13.54.12.02.02.01.4
Intermittent access standard deviation0.50.50.70.80.80.80.5
Left kidney weight0.30.91.1-1.1-1.0-1.0-0.6
Right kidney weight2.77.57.8-2.8-2.7-2.7-2.7
Cocaine induced anxiety1.31.52.2-1.1-1.1-1.1-1.5
Post-drug Anxiety5.46.06.4-2.4-2.4-2.4-2.5
Baseline Anxiety0.91.01.1-1.0-1.0-1.0-0.8
Tail length0.10.20.40.50.60.60.2
Length with tail2.07.27.3-2.7-2.7-2.7-2.7
Length without tail7.616.717.1-4.1-4.1-4.1-4.0
Times rat made contact with spout0.10.10.10.30.30.40.2
Lifetime Intake2.52.83.41.81.81.91.2
Liver weight, left2.13.44.5-1.7-1.7-1.7-2.1
Liver weight, right1.62.73.5-1.6-1.6-1.6-1.9
Locomotor activity1.11.82.01.41.41.41.2
Locomotor testing distance3.05.05.32.32.32.32.1
Locomotor testing rearing2.23.43.92.02.02.01.5
Locomotion in novel chamber0.50.70.7-0.8-0.8-0.8-0.8
Locomotion in novel chamber post-restriction0.00.00.0-0.1-0.1-0.1-0.0
Fecal boli incidents, locomotor time 12.32.52.71.51.51.61.6
Change in fecal boli incidents, locomotor task1.31.31.6-1.2-1.2-1.3-0.8
Time >=10cm from walls, locomotor time 10.10.10.1-0.4-0.4-0.4-0.4
Bouts of movement, locomotor time 10.00.00.1-0.0-0.1-0.10.4
Total resting periods, locomotor time 10.30.30.80.40.40.40.9
Rest time, locomotor task time 10.40.50.70.60.60.70.8
Distance moved, locomotor task time 10.10.10.3-0.2-0.2-0.2-0.5
Vertical activity count, locomotor time 11.51.51.8-1.2-1.2-1.2-1.3
Time >=10cm from walls, locomotor time 20.80.81.10.80.80.81.1
Bouts of movement, locomotor time 22.62.83.0-1.7-1.7-1.7-1.6
Total resting periods, locomotor time 23.03.13.3-1.8-1.8-1.8-1.7
Rest time, locomotor task time 20.00.00.1-0.1-0.1-0.1-0.3
Distance moved, locomotor task time 20.10.10.10.30.20.20.4
Vertical activity count, locomotor time 20.00.00.1-0.1-0.1-0.0-0.3
Light reinforcement 12.74.95.62.32.42.31.7
Light reinforcement 20.91.21.31.11.11.10.9
Bone: marrow area7.917.117.4-4.1-4.1-4.2-4.1
Bone: maximum diameter3.97.29.1-2.6-2.6-2.5-3.0
Bone: maximum force14.925.726.8-5.1-5.1-5.2-4.8
Bone: maximum moment15.426.528.3-5.2-5.2-5.3-4.8
Mean time between licks in bursts0.10.20.60.30.20.20.7
Mean num. licks in bursts0.10.10.3-0.1-0.2-0.20.5
Cd content in liver0.70.70.90.90.91.00.5
Co content in liver0.60.71.10.80.91.00.3
Cu content in liver0.60.70.8-0.8-0.9-0.9-0.8
Fe content in liver0.30.30.50.70.70.70.1
K content in liver0.20.20.2-0.4-0.4-0.4-0.5
Mg content in liver0.00.00.00.10.10.20.2
Mn content in liver0.10.10.1-0.3-0.3-0.40.1
Na content in liver0.00.10.10.30.20.30.1
Rb content in liver0.40.50.60.70.70.80.4
Se content in liver0.70.80.90.90.91.00.8
Sr content in liver0.40.30.7-0.5-0.4-0.4-0.8
Zn content in liver1.92.12.51.51.51.61.2
Bone: minimum diameter9.417.618.6-4.2-4.1-4.1-4.3
Time in familiar zone, hab. session 10.40.40.90.50.50.50.9
Time in novel zone, hab. session 10.40.40.7-0.5-0.5-0.5-0.8
Total zone transitions, hab. session 10.40.50.80.70.70.70.9
Total locomotion distance, hab. session 10.00.00.1-0.1-0.1-0.10.3
Locomotion velocity, hab. session 10.00.00.1-0.2-0.2-0.20.1
Time in familiar zone, hab. session 20.30.30.4-0.6-0.6-0.6-0.2
Time in novel zone, hab. session 20.20.20.30.50.50.50.1
Total zone transitions, hab. session 20.40.51.00.60.60.61.0
Total locomotion distance, hab. session 20.20.20.60.30.30.30.8
Locomotion velocity, hab. session 20.10.10.40.20.20.10.6
Novel to familiar place preference ratio2.12.23.3-1.4-1.4-1.4-1.8
Novelty place preference1.61.62.6-1.1-1.2-1.2-1.6
Time in novel zone, NPP test1.41.42.3-1.0-1.1-1.1-1.5
Total zone transitions, NPP test1.52.23.01.41.41.41.7
Total locomotion distance, NPP test1.92.63.61.51.51.51.9
Locomotion velocity, NPP test1.11.52.31.11.11.11.5
Intraocular pressure7.810.911.03.33.33.33.3
Delta distance traveled before/after self-admin0.10.10.1-0.3-0.3-0.3-0.1
Delta ambulatory time before/after self-admin0.00.00.0-0.1-0.0-0.0-0.1
Parametrial fat weight2.24.44.52.12.12.12.1
Pavlov. Cond. lever latency0.10.10.3-0.3-0.4-0.50.0
Pavlov. Cond. magazine entry latency0.00.00.0-0.1-0.0-0.1-0.1
Pavlov. Cond. change in total contacts0.10.10.2-0.1-0.1-0.0-0.5
Pavlov. Cond. index score0.10.10.3-0.1-0.00.0-0.5
Pavlov. Cond. latency score0.00.10.2-0.00.10.1-0.4
Pavlov. Cond. lever contacts0.50.50.80.70.80.90.3
Pavlov. Cond. magazine entry number0.00.00.0-0.2-0.2-0.20.1
Pavlov. Cond. intertrial magazine entries0.50.71.60.60.60.61.3
Pavlov. Cond. lever-magazine prob. diff.0.20.20.6-0.4-0.4-0.3-0.8
Pavlov. Cond. response bias0.10.10.10.30.30.30.0
Pavlov. Cond. lever latency0.00.00.0-0.2-0.2-0.20.1
Pavlov. Cond. magazine entry latency1.11.31.3-1.1-1.1-1.1-1.2
Pavlov. Cond. change in total contacts1.62.13.3-1.4-1.3-1.3-1.8
Pavlov. Cond. index score0.50.71.1-0.8-0.8-0.7-1.0
Pavlov. Cond. latency score0.60.71.0-0.8-0.8-0.8-1.0
Pavlov. Cond. lever contacts0.10.10.20.40.40.50.1
Pavlov. Cond. magazine entry number2.32.93.51.61.61.61.9
Pavlov. Cond. intertrial magazine entries5.57.27.82.62.62.72.8
Pavlov. Cond. lever-magazine prob. diff.1.01.21.7-1.1-1.1-1.0-1.3
Pavlov. Cond. response bias0.00.00.10.10.10.1-0.3
Time in closed arm before self-admin1.61.82.5-1.3-1.3-1.3-1.6
Time in closed arm after self-admin0.80.81.0-0.8-0.9-0.9-1.0
Time in open arm before self-admin0.80.91.1-0.9-0.9-0.9-1.0
Time in open arm after self-admin0.30.30.60.50.50.50.8
Bone: periosteal estimation12.325.426.5-5.0-5.0-5.0-5.2
Bone: periosteal perimeter10.617.718.8-4.2-4.2-4.1-4.3
Bone: post-yield work9.012.212.8-3.5-3.5-3.6-3.4
Progressive ratio test 1 active lever presses4.64.85.42.32.32.31.8
Progressive ratio test 1 breakpoint4.24.45.02.22.22.21.7
Progressive ratio test 1 inactive lever presses3.53.94.22.02.02.01.8
Progressive ratio test 2 active lever presses2.32.53.01.71.71.71.1
Progressive ratio test 2 breakpoint3.03.43.91.92.02.01.4
Progressive ratio test 2 inactive lever presses2.52.93.21.81.81.81.4
Incentive Sensitization - Responses0.00.00.1-0.1-0.00.0-0.3
Incentive Sensitization - Breakpoint0.00.00.00.10.10.1-0.2
Sum of active levers in priming session hrs 5-60.00.00.00.20.10.10.2
Progressive ratio0.00.00.10.20.20.30.0
Food seeking constrained by brief footshock0.30.40.50.70.70.70.5
Seeking ratio, punishment vs. effort0.00.00.00.10.00.00.1
Retroperitoneal fat weight0.51.61.91.31.31.41.0
Reaction time number correct1.42.02.6-1.5-1.5-1.6-0.9
Reaction time mean minus median8.411.011.53.43.43.43.2
Reaction time mean minus median AUC6.07.78.02.82.82.82.7
Reaction time num false alarms1.72.32.41.51.51.51.5
Reaction time num false alarms AUC2.43.33.31.81.81.81.8
Reaction time trials correct on left1.42.02.6-1.5-1.5-1.6-0.9
Reaction time trials on left1.11.52.1-1.3-1.3-1.4-0.7
Reaction time mean0.60.91.01.01.01.00.8
Reaction time mean AUC0.40.50.60.70.70.80.6
Median of all reaction times0.00.00.1-0.1-0.1-0.0-0.3
Reaction time omissions10.213.914.03.73.73.73.7
Reaction time false alarm rate2.63.74.12.02.02.01.7
Reaction time premature initiation rate6.28.39.73.03.03.12.3
Reaction time premature initiations2.94.04.42.12.12.11.7
Std. dev. reaction times6.28.68.93.03.03.02.8
Reaction time trials completed1.11.52.1-1.3-1.3-1.4-0.7
Reaction time trials AUC1.72.53.3-1.7-1.7-1.8-1.0
Run reversals in cocaine runway, females0.00.00.0-0.0-0.0-0.0-0.2
Run reversals in cocaine runway, males1.61.61.61.21.21.31.3
Latency to leave start box in cocaine runway0.00.00.00.10.10.1-0.0
Latency to leave start box in cocaine runway, F1.71.92.01.41.41.41.2
Latency to leave start box in cocaine runway, M2.12.02.1-1.4-1.4-1.4-1.4
Std. dev. time between licks in bursts1.11.31.51.21.21.20.8
Total sessions with >9 infusions1.01.11.51.11.21.20.5
Short access day 1 total inactive lever presses1.41.61.91.31.41.40.8
Short access day 10 total inactive lever presses0.20.20.20.50.40.40.5
Short access day 1 total infusions0.10.10.10.30.30.4-0.0
Short access day 10 total infusions1.01.11.51.11.11.20.7
Short access total infusions0.60.60.90.80.91.00.2
Short access day 1 locomotion0.10.10.20.40.40.4-0.1
Short access day 10 total locomotion0.10.10.10.40.40.40.3
Short access total locomotion0.40.40.60.70.70.70.3
One hour access (0.3 mA shock)0.30.30.50.60.70.70.1
Compulsive drug intake0.90.91.2-1.0-1.1-1.1-0.5
One hour access (shock baseline)0.20.30.40.50.60.6-0.2
Social response proportion0.10.10.20.40.40.40.2
Social responses7.69.811.03.33.33.32.6
Social time0.00.00.00.0-0.0-0.00.2
Soleus weight0.72.02.3-1.4-1.4-1.3-1.5
Bone: stiffness17.727.928.1-5.3-5.3-5.3-5.2
Tibialis anterior weight1.24.18.3-1.7-1.7-1.5-2.9
Time to tail flick, vehicle, before self-admin1.01.11.60.90.90.91.3
Time to tail flick, vehicle, after self-admin0.30.30.3-0.5-0.5-0.5-0.6
Time to tail flick, test, before self-admin0.40.40.90.50.50.51.0
Time to tail flick, test, after self-admin0.20.20.2-0.5-0.5-0.5-0.5
Delta time to tail flick, vehicle, before/after SA0.50.50.7-0.6-0.6-0.6-0.9
Delta time to tail flick, test, before/after SA0.30.20.5-0.4-0.4-0.4-0.7
Tibia length7.621.524.1-4.6-4.6-4.5-4.9
Ambulatory time before self-admin4.14.24.32.12.02.02.1
Ambulatory time after self-admin2.02.22.21.51.51.51.4
Bone: tissue strength1.21.11.5-1.1-1.1-1.2-0.7
Total heroin consumption2.12.53.1-1.5-1.5-1.5-1.8
Bone: trabecular number6.410.111.0-3.2-3.3-3.3-2.8
Bone: trabecular spacing2.43.13.41.81.81.91.6
Bone: trabecular thickness0.10.10.10.30.30.30.3
Bone: trabecular tissue density0.10.10.10.30.30.30.2
Water consumed over 24 hours0.00.00.0-0.1-0.1-0.1-0.0
Number of responses in last shaping day0.20.20.6-0.1-0.0-0.0-0.8