Tuba1c

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc intron excision ratio chr7_131997727_132043081 0.06 0.04 2.5e-10 0.06 0.06 0.05 0.06 1.6e-09 2.0e-09 7.6e-08 7.3e-10
2 PL gene expression Tuba1c 0.03 0.03 1.1e-03 0.02 0.02 0.01 0.01 3.6e-03 5.6e-03 7.5e-03 1.1e-02
3 NAcc gene expression Tuba1c 0.04 0.03 1.7e-06 0.03 0.03 0.03 0.03 9.6e-06 2.3e-05 1.7e-05 1.6e-05
4 Liver gene expression Tuba1c 0.03 0.02 1.1e-03 0.02 0.01 0.01 0.01 3.9e-03 2.5e-02 3.5e-02 1.7e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density9.616.517.5-4.2-4.0-4.14.0
Area under the delay curve0.70.80.9-0.9-1.0-0.90.9
BMI with tail7.024.125.8-5.0-4.7-4.95.1
BMI without tail2.06.17.0-2.5-2.0-2.62.6
Body weight7.231.534.1-5.7-5.2-5.85.7
Weight adjusted by age2.74.04.5-2.0-1.8-2.12.1
Bone surface11.320.521.8-4.7-4.6-4.54.4
Bone volume8.615.416.6-4.1-3.9-4.03.7
Breakpoint value in progressive ratio session1.31.62.0-1.1-1.4-1.31.3
Number of licking bursts0.20.30.70.40.90.3-0.0
Context. condit. distance diff. score0.50.61.1-0.6-0.5-0.71.0
Locomotion velocity, session 11.11.21.51.20.91.1-1.2
Locomotion distance, session 13.14.05.02.11.62.0-2.2
Locomotion velocity, session 20.50.61.00.80.50.6-1.0
Locomotion distance, session 22.73.85.02.01.71.9-2.2
Locomotion velocity, session 34.14.75.32.12.12.1-2.3
Locomotion distance, session 35.25.66.22.32.42.4-2.5
Stereotopy head waving bouts, day 30.91.11.4-1.2-1.0-1.20.8
Stereotopy head waving duration, day 30.40.40.7-0.7-0.9-0.70.3
Locomotion velocity, session 70.10.10.40.20.60.3-0.3
Locomotion distance, session 71.21.52.51.11.61.2-0.9
Stereotopy head waving bouts, day 71.31.41.7-1.2-1.1-1.31.2
Stereotopy head waving duration, day 71.01.21.3-1.1-1.1-1.11.0
Locomotion velocity, session 80.00.00.00.1-0.1-0.10.0
Locomotion distance, session 81.11.61.91.41.21.3-1.1
Degree of sensitization distance0.70.81.2-0.9-0.6-0.81.1
Degree of sensitization stereotypy0.20.20.3-0.4-0.2-0.50.5
Conditioned locomotion0.00.00.0-0.1-0.0-0.1-0.1
Cocaine response after cond. corrected0.00.00.10.10.10.0-0.2
Cocaine response after cond. not corrected0.70.80.91.00.80.9-0.9
Cocaine response before conditioning3.94.75.52.22.02.3-2.0
Saline control response0.00.00.1-0.1-0.20.10.1
Bone: connectivity density6.410.010.6-3.3-3.2-3.13.1
Bone: cortical apparent density0.20.30.50.50.40.7-0.5
Bone: cortical area11.617.819.6-4.2-4.0-4.44.2
Bone: cortical porosity1.11.21.61.00.71.2-1.2
Bone: cortical porosity1.31.41.81.10.91.3-1.3
Bone: cortical thickness4.67.69.5-2.7-2.4-3.12.8
Bone: cortical thickness0.30.30.6-0.5-0.1-0.70.7
Bone: cortical tissue density0.30.40.70.60.50.8-0.6
Condit. Reinf. active minus inactive responses0.20.20.50.40.20.3-0.7
Condit. Reinf. active-inactive response ratio0.20.20.4-0.4-0.6-0.40.0
Condit. Reinf. active responses0.80.91.51.10.80.7-1.2
Condit. Reinf. inactive responses2.83.43.81.91.91.8-1.8
Incentive salience index mean0.00.00.1-0.0-0.1-0.3-0.1
Condit. Reinf. lever presses0.10.20.5-0.4-0.4-0.70.2
Condit. Reinf. active minus inactive responses0.00.00.00.00.10.2-0.1
Condit. Reinf. active-inactive response ratio0.30.40.40.60.60.5-0.7
Condit. Reinf. active responses0.20.20.30.40.50.6-0.3
Condit. Reinf. inactive responses0.50.60.90.70.81.0-0.5
Condit. Reinf. lever presses0.00.10.1-0.2-0.1-0.10.4
Condit. Reinf. lever reinforcers received0.40.50.70.70.80.8-0.6
Conditioned reinforcement - actives0.91.52.21.11.51.1-1.1
Conditioned reinforcement - inactives3.75.46.92.32.62.1-2.3
Conditioned locomotion0.10.20.30.30.50.4-0.3
Patch foraging indifference point 0 sec1.83.33.81.81.91.8-1.7
Patch foraging indifference point AUC0.81.11.41.11.11.2-0.8
Delay disc. indifference point, 0s delay0.91.01.3-1.1-1.1-0.90.9
Delay disc. indifference point, 16s delay1.01.11.3-1.0-0.9-1.11.1
Delay disc. indifference point, 2s delay1.01.21.6-1.1-1.3-1.01.0
Delay disc. indifference point, 24s delay1.11.21.6-1.1-1.2-0.91.2
Delay disc. indifference point, 4s delay0.30.30.4-0.6-0.6-0.50.5
Delay disc. indifference point, 8s delay2.02.32.6-1.5-1.4-1.61.6
Indifference point function ln k2.95.05.3-2.3-2.2-2.32.2
Indifference point function log k2.95.05.3-2.3-2.2-2.32.2
Patch foraging total patch changes 0 sec1.73.23.71.81.91.8-1.6
Patch foraging total patch changes 12 sec2.12.73.21.81.81.5-1.5
Patch foraging total patch changes 18 sec3.55.36.62.22.32.6-2.1
Patch foraging total patch changes 24 sec1.42.42.91.51.71.5-1.4
Patch foraging total patch changes 6 sec2.43.74.02.02.02.0-1.7
Patch foraging time to switch 0 sec1.73.54.02.01.71.8-1.9
Patch foraging water rate 0 sec2.55.35.8-2.4-2.1-2.32.3
Patch foraging water rate 12 sec2.65.46.1-2.5-2.3-2.32.3
Patch foraging water rate 18 sec0.40.70.9-0.8-0.6-0.90.9
Patch foraging water rate 24 sec3.04.14.3-2.1-2.0-2.12.0
Patch foraging water rate 6 sec4.26.17.0-2.6-2.3-2.52.4
Seeking ratio, delayed vs. immediate footshock0.10.10.1-0.2-0.4-0.40.1
Distance traveled before self-admin0.71.01.20.91.11.0-0.9
Distance traveled after self-admin0.40.40.60.60.60.7-0.8
Extensor digitorum longus weight4.618.220.6-4.2-3.8-4.54.5
Bone: elastic displacement4.85.66.82.41.92.5-2.6
Bone: elastic work0.10.10.2-0.0-0.40.3-0.4
Bone: endosteal estimation8.117.818.5-4.3-4.3-4.24.1
Bone: endosteal perimeter7.816.617.9-4.0-3.8-4.24.2
Epididymis fat weight0.82.63.3-1.8-1.7-1.41.4
Delta time in closed arm before/after self-admin0.00.00.10.20.10.3-0.1
Delta time in open arm before/after self-admin1.11.11.41.11.00.8-1.2
Diff in mean of infusions in LGA sessions0.91.11.3-1.0-1.1-1.10.9
Delay discount exponential model param0.70.80.90.90.90.8-0.9
Extinction: sum of active levers before priming1.51.62.1-1.2-1.5-1.21.2
Active lever presses in extinction session 61.11.11.4-1.1-1.1-1.20.9
Bone: final force10.717.018.3-4.1-4.3-4.23.9
Bone: final moment11.318.120.4-4.3-4.5-4.33.9
Food consumed during 24 hour testing period1.42.02.1-1.4-1.4-1.51.3
Glucose0.30.50.9-0.6-0.4-0.70.9
Heart weight0.10.20.3-0.3-0.3-0.30.6
Delay discount hyperbolic model param0.60.70.90.80.90.8-0.8
Intermittent access intake day 1-15 change0.00.10.20.10.50.30.2
Intermittent access intake escalation0.00.10.2-0.20.20.10.4
Intermittent access intake escalation 20.10.10.30.20.60.30.0
Intermitt. access day 1 inactive lever presses0.31.21.61.10.81.3-1.1
Intermitt. access day 15 inactive lever presses0.71.41.71.21.31.2-1.1
Intermitt. access escalation Index0.60.91.1-0.9-0.9-1.01.0
Intermittent access day 1 total infusions0.81.31.51.21.21.0-1.1
Intermittent access day 15 total infusions0.50.81.60.81.30.9-0.5
Intermittent access terminal intake (last 3 days)1.01.32.21.11.51.2-0.9
Intermittent access total infusions1.51.72.91.31.71.2-1.0
Intermittent access day 1 locomotion0.10.10.20.20.30.4-0.1
Intermittent access day 15 total locomotion0.10.20.40.10.60.40.1
Intermittent access total locomotion0.91.11.80.81.31.2-0.7
Intermittent access standard deviation0.20.40.60.70.80.5-0.4
Left kidney weight0.83.74.9-2.0-1.8-2.21.6
Right kidney weight4.219.320.9-4.6-4.2-4.54.3
Cocaine induced anxiety3.24.65.7-2.1-1.9-2.22.4
Post-drug Anxiety3.73.94.5-1.9-1.9-2.02.1
Baseline Anxiety0.00.00.0-0.1-0.1-0.2-0.1
Tail length0.00.10.2-0.30.0-0.40.2
Length with tail1.77.48.9-2.8-2.5-3.02.6
Length without tail5.618.119.3-4.3-4.2-4.44.1
Times rat made contact with spout0.10.10.10.30.30.1-0.3
Lifetime Intake1.82.23.81.41.91.3-1.2
Liver weight, left10.116.617.5-4.1-4.0-4.14.2
Liver weight, right2.64.65.6-2.4-2.2-2.02.0
Locomotor activity1.21.92.81.31.71.1-1.3
Locomotor testing distance2.74.86.52.12.52.1-2.0
Locomotor testing rearing1.83.55.11.82.31.9-1.5
Locomotion in novel chamber1.21.61.7-1.3-1.2-1.31.2
Locomotion in novel chamber post-restriction0.00.10.1-0.00.20.2-0.4
Fecal boli incidents, locomotor time 11.42.03.21.51.50.7-1.8
Change in fecal boli incidents, locomotor task0.50.50.9-0.8-0.9-0.60.6
Time >=10cm from walls, locomotor time 10.10.10.2-0.4-0.2-0.30.3
Bouts of movement, locomotor time 10.10.10.2-0.1-0.2-0.2-0.4
Total resting periods, locomotor time 10.30.30.90.40.30.3-0.9
Rest time, locomotor task time 10.30.30.70.50.50.2-0.8
Distance moved, locomotor task time 10.10.10.2-0.1-0.20.20.5
Vertical activity count, locomotor time 10.71.62.3-1.2-1.1-1.21.5
Time >=10cm from walls, locomotor time 20.71.01.30.91.10.8-1.2
Bouts of movement, locomotor time 22.13.33.6-1.9-1.9-1.71.8
Total resting periods, locomotor time 22.13.74.1-2.0-2.0-1.72.0
Rest time, locomotor task time 20.00.00.1-0.2-0.1-0.20.2
Distance moved, locomotor task time 20.10.20.30.40.30.5-0.4
Vertical activity count, locomotor time 20.10.10.2-0.40.0-0.50.3
Light reinforcement 11.94.65.62.12.42.3-1.8
Light reinforcement 20.61.01.41.01.20.7-1.0
Bone: marrow area7.917.318.1-4.3-4.2-4.14.1
Bone: maximum diameter4.68.510.1-2.9-2.5-3.23.1
Bone: maximum force15.527.530.1-5.3-5.5-5.15.0
Bone: maximum moment16.228.432.4-5.4-5.7-5.15.0
Mean time between licks in bursts0.20.40.60.60.30.8-0.8
Mean num. licks in bursts0.10.10.40.2-0.30.1-0.6
Cd content in liver0.70.80.90.90.80.8-1.0
Co content in liver0.10.10.50.30.7-0.0-0.0
Cu content in liver1.31.62.5-1.1-1.2-1.61.1
Fe content in liver1.72.12.71.71.61.3-1.3
K content in liver0.10.10.2-0.2-0.1-0.50.3
Mg content in liver0.10.10.30.30.40.1-0.5
Mn content in liver0.10.10.2-0.0-0.10.4-0.4
Na content in liver0.00.00.10.10.1-0.10.2
Rb content in liver0.00.00.10.00.1-0.30.2
Se content in liver1.51.72.51.31.61.2-1.2
Sr content in liver2.01.82.0-1.4-1.1-1.41.4
Zn content in liver0.70.81.10.91.10.7-0.9
Bone: minimum diameter10.018.318.8-4.3-4.2-4.34.3
Time in familiar zone, hab. session 10.40.40.60.70.40.6-0.8
Time in novel zone, hab. session 10.40.40.6-0.6-0.4-0.50.8
Total zone transitions, hab. session 10.40.50.60.80.70.6-0.7
Total locomotion distance, hab. session 10.00.00.1-0.0-0.10.0-0.3
Locomotion velocity, hab. session 10.00.00.0-0.2-0.2-0.0-0.1
Time in familiar zone, hab. session 20.20.20.5-0.4-0.7-0.40.2
Time in novel zone, hab. session 20.10.10.30.30.50.4-0.1
Total zone transitions, hab. session 20.30.40.60.70.60.5-0.8
Total locomotion distance, hab. session 20.20.20.60.30.20.4-0.8
Locomotion velocity, hab. session 20.10.10.30.20.10.2-0.6
Novel to familiar place preference ratio2.22.43.4-1.6-1.4-1.41.8
Novelty place preference1.71.82.7-1.3-1.2-1.21.6
Time in novel zone, NPP test1.51.62.5-1.2-1.1-1.01.6
Total zone transitions, NPP test1.42.02.81.51.31.2-1.7
Total locomotion distance, NPP test1.92.63.41.51.51.5-1.9
Locomotion velocity, NPP test1.01.42.21.11.11.1-1.5
Intraocular pressure7.310.511.53.23.13.2-3.4
Delta distance traveled before/after self-admin0.00.00.0-0.0-0.00.0-0.2
Delta ambulatory time before/after self-admin0.00.00.00.10.20.2-0.2
Parametrial fat weight0.82.02.91.41.71.2-1.3
Pavlov. Cond. lever latency0.10.20.6-0.2-0.70.10.0
Pavlov. Cond. magazine entry latency0.00.00.00.10.10.2-0.1
Pavlov. Cond. change in total contacts0.10.10.3-0.10.0-0.40.5
Pavlov. Cond. index score0.10.10.3-0.30.2-0.50.5
Pavlov. Cond. latency score0.10.10.2-0.20.3-0.50.4
Pavlov. Cond. lever contacts0.30.41.00.61.00.3-0.3
Pavlov. Cond. magazine entry number0.00.00.00.0-0.10.1-0.2
Pavlov. Cond. intertrial magazine entries0.60.71.30.90.50.7-1.1
Pavlov. Cond. lever-magazine prob. diff.0.30.30.6-0.5-0.1-0.70.7
Pavlov. Cond. response bias0.10.10.20.40.50.2-0.2
Pavlov. Cond. lever latency0.10.10.2-0.3-0.4-0.20.2
Pavlov. Cond. magazine entry latency1.11.31.5-1.1-1.2-1.11.2
Pavlov. Cond. change in total contacts1.82.93.6-1.6-1.4-1.91.8
Pavlov. Cond. index score0.81.01.3-1.0-0.9-1.11.2
Pavlov. Cond. latency score0.60.91.1-0.9-0.8-1.01.0
Pavlov. Cond. lever contacts0.00.00.10.10.3-0.00.0
Pavlov. Cond. magazine entry number2.73.33.71.81.71.8-1.9
Pavlov. Cond. intertrial magazine entries6.19.110.33.03.02.9-3.2
Pavlov. Cond. lever-magazine prob. diff.1.01.41.8-1.1-1.0-1.21.3
Pavlov. Cond. response bias0.10.10.2-0.3-0.2-0.40.5
Time in closed arm before self-admin2.53.23.9-1.7-1.6-1.82.0
Time in closed arm after self-admin0.10.10.2-0.4-0.3-0.20.5
Time in open arm before self-admin0.00.00.1-0.10.10.30.1
Time in open arm after self-admin0.10.10.20.3-0.00.0-0.4
Bone: periosteal estimation13.528.429.9-5.4-5.2-5.55.3
Bone: periosteal perimeter11.419.721.2-4.4-4.3-4.64.4
Bone: post-yield work8.813.014.0-3.7-3.7-3.33.6
Progressive ratio test 1 active lever presses4.55.57.52.32.72.3-2.1
Progressive ratio test 1 breakpoint4.15.07.02.12.62.2-1.9
Progressive ratio test 1 inactive lever presses1.72.53.51.51.91.5-1.4
Progressive ratio test 2 active lever presses1.41.62.81.11.71.1-1.0
Progressive ratio test 2 breakpoint1.31.42.61.01.61.1-0.9
Progressive ratio test 2 inactive lever presses0.91.52.51.11.61.1-0.9
Incentive Sensitization - Responses0.30.40.5-0.7-0.1-0.70.6
Incentive Sensitization - Breakpoint0.20.30.4-0.6-0.1-0.60.5
Sum of active levers in priming session hrs 5-60.00.00.10.0-0.20.00.1
Progressive ratio0.20.20.60.40.80.4-0.3
Food seeking constrained by brief footshock0.60.71.30.81.20.6-0.7
Seeking ratio, punishment vs. effort0.00.00.10.2-0.0-0.0-0.2
Retroperitoneal fat weight0.41.62.11.21.21.1-1.5
Reaction time number correct0.71.42.1-1.2-1.4-1.20.8
Reaction time mean minus median4.511.211.93.43.33.5-3.2
Reaction time mean minus median AUC3.07.68.72.82.72.9-2.6
Reaction time num false alarms1.72.32.51.61.41.6-1.5
Reaction time num false alarms AUC2.13.43.71.91.71.9-1.8
Reaction time trials correct on left0.71.42.1-1.2-1.4-1.20.8
Reaction time trials on left0.51.01.6-1.0-1.3-1.00.6
Reaction time mean0.60.91.10.91.00.9-0.9
Reaction time mean AUC0.30.50.60.70.80.7-0.6
Median of all reaction times0.00.00.0-0.2-0.0-0.20.2
Reaction time omissions10.315.016.33.93.83.8-4.0
Reaction time false alarm rate2.43.33.61.91.91.9-1.6
Reaction time premature initiation rate4.96.89.52.73.12.3-2.3
Reaction time premature initiations2.03.54.61.92.11.6-1.7
Std. dev. reaction times4.88.99.43.03.03.1-2.9
Reaction time trials completed0.51.01.6-1.0-1.3-1.00.6
Reaction time trials AUC1.01.82.7-1.4-1.7-1.30.9
Run reversals in cocaine runway, females0.00.00.10.1-0.20.20.3
Run reversals in cocaine runway, males1.21.21.31.11.11.0-1.1
Latency to leave start box in cocaine runway0.00.00.10.20.30.1-0.1
Latency to leave start box in cocaine runway, F1.01.11.51.01.21.0-0.9
Latency to leave start box in cocaine runway, M1.71.51.6-1.2-1.3-1.21.2
Std. dev. time between licks in bursts0.81.11.71.01.31.0-0.8
Total sessions with >9 infusions1.61.93.91.22.01.0-1.2
Short access day 1 total inactive lever presses1.41.82.81.41.71.1-1.1
Short access day 10 total inactive lever presses0.10.20.30.50.20.4-0.4
Short access day 1 total infusions0.40.61.30.61.10.5-0.7
Short access day 10 total infusions1.21.52.91.31.70.9-0.9
Short access total infusions1.82.34.31.52.11.2-1.2
Short access day 1 locomotion0.10.10.40.10.60.0-0.1
Short access day 10 total locomotion0.10.20.30.40.60.6-0.3
Short access total locomotion0.60.71.30.71.10.8-0.6
One hour access (0.3 mA shock)0.10.10.40.10.60.10.1
Compulsive drug intake0.10.10.30.2-0.00.2-0.5
One hour access (shock baseline)0.10.20.4-0.30.3-0.30.7
Social response proportion0.10.10.20.50.50.1-0.2
Social responses7.09.110.63.23.32.9-2.6
Social time0.00.00.00.1-0.1-0.2-0.2
Soleus weight0.61.92.0-1.4-1.4-1.41.4
Bone: stiffness18.530.231.8-5.6-5.5-5.45.5
Tibialis anterior weight1.44.87.1-2.1-1.5-2.32.7
Time to tail flick, vehicle, before self-admin1.92.02.51.41.01.5-1.6
Time to tail flick, vehicle, after self-admin0.10.10.1-0.4-0.2-0.20.3
Time to tail flick, test, before self-admin0.60.61.00.70.30.9-1.0
Time to tail flick, test, after self-admin0.50.50.8-0.7-0.9-0.40.7
Delta time to tail flick, vehicle, before/after SA0.60.60.9-0.8-0.5-0.90.8
Delta time to tail flick, test, before/after SA0.40.40.6-0.7-0.4-0.60.8
Tibia length8.022.023.6-4.7-4.5-4.94.8
Ambulatory time before self-admin1.82.62.91.61.61.7-1.6
Ambulatory time after self-admin1.31.51.71.21.31.2-1.2
Bone: tissue strength1.01.01.7-1.0-1.3-0.70.8
Total heroin consumption0.91.11.4-1.1-1.0-0.91.2
Bone: trabecular number5.79.410.4-3.2-3.2-3.02.9
Bone: trabecular spacing2.33.03.61.81.91.6-1.6
Bone: trabecular thickness0.00.10.10.20.40.1-0.2
Bone: trabecular tissue density0.00.00.10.10.10.3-0.1
Water consumed over 24 hours0.10.10.1-0.4-0.4-0.30.2
Number of responses in last shaping day0.10.10.2-0.20.40.00.4