Trim10

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 pVTA gene expression Trim10 0.08 0.05 4.3e-06 0.06 0.07 0.06 0.07 1.0e-05 2.3e-06 6.2e-06 5.0e-06
2 Brain gene expression Trim10 0.04 0.02 2.2e-03 0.04 0.03 0.03 0.03 2.9e-04 2.1e-03 1.1e-03 1.8e-03
3 NAcc gene expression Trim10 0.04 0.02 6.8e-04 -0 0.01 0.02 0.01 5.6e-01 5.0e-03 7.6e-04 3.7e-02
4 PL gene expression Trim10 0.05 0.03 6.2e-06 0.03 0.04 0.06 0.05 2.1e-04 1.1e-05 5.3e-07 4.2e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density2.24.09.1-1.50.53.02.1
Area under the delay curve0.40.61.80.3-0.2-0.6-1.3
BMI with tail0.31.22.1-1.41.4-0.7-0.6
BMI without tail0.52.67.9-0.40.5-2.8-1.5
Body weight2.611.516.82.7-2.5-4.0-4.1
Weight adjusted by age0.82.32.81.7-1.2-1.5-1.6
Bone surface0.71.43.11.1-1.81.1-0.0
Bone volume0.40.92.90.1-0.61.70.5
Breakpoint value in progressive ratio session0.10.10.4-0.60.10.10.3
Number of licking bursts0.41.12.21.1-0.6-1.5-0.9
Context. condit. distance diff. score0.70.92.01.4-0.60.70.9
Locomotion velocity, session 10.70.72.10.7-1.40.6-0.1
Locomotion distance, session 11.41.82.9-1.40.81.71.3
Locomotion velocity, session 20.30.40.60.4-0.7-0.5-0.8
Locomotion distance, session 20.71.12.4-0.6-0.11.61.2
Locomotion velocity, session 30.50.61.5-1.01.2-0.30.0
Locomotion distance, session 30.60.71.2-0.71.00.21.1
Stereotopy head waving bouts, day 32.12.42.91.6-1.5-1.4-1.7
Stereotopy head waving duration, day 31.01.21.81.2-1.1-0.7-1.3
Locomotion velocity, session 71.31.53.2-0.41.01.21.8
Locomotion distance, session 72.63.34.9-1.12.01.82.2
Stereotopy head waving bouts, day 71.31.52.91.0-1.0-1.1-1.7
Stereotopy head waving duration, day 71.61.93.31.0-1.2-1.4-1.8
Locomotion velocity, session 83.84.68.12.8-2.8-0.5-1.4
Locomotion distance, session 80.60.91.31.0-0.61.01.1
Degree of sensitization distance0.20.20.70.9-0.10.4-0.1
Degree of sensitization stereotypy0.30.40.80.3-0.4-0.6-0.9
Conditioned locomotion1.61.94.00.7-0.5-2.0-1.7
Cocaine response after cond. corrected0.30.41.2-0.70.11.10.2
Cocaine response after cond. not corrected0.50.81.20.9-1.1-0.1-1.0
Cocaine response before conditioning4.85.86.62.6-2.0-2.6-2.5
Saline control response0.40.51.1-0.80.5-1.0-0.4
Bone: connectivity density2.03.27.6-0.8-0.32.82.1
Bone: cortical apparent density0.61.01.8-1.31.20.8-0.0
Bone: cortical area0.40.61.01.0-1.0-0.1-0.7
Bone: cortical porosity0.00.00.1-0.00.1-0.4-0.2
Bone: cortical porosity0.40.40.60.7-0.5-0.8-0.5
Bone: cortical thickness0.71.12.0-1.41.11.1-0.0
Bone: cortical thickness2.02.55.0-2.12.20.70.5
Bone: cortical tissue density0.50.81.5-1.21.00.7-0.1
Condit. Reinf. active minus inactive responses0.10.10.3-0.1-0.20.60.1
Condit. Reinf. active-inactive response ratio0.20.20.3-0.50.10.2-0.6
Condit. Reinf. active responses0.40.50.7-0.50.50.80.8
Condit. Reinf. inactive responses2.43.24.8-1.41.91.62.2
Incentive salience index mean0.30.40.90.8-0.90.00.0
Condit. Reinf. lever presses0.50.81.51.2-1.2-0.10.5
Condit. Reinf. active minus inactive responses1.01.64.01.0-0.7-2.0-1.0
Condit. Reinf. active-inactive response ratio1.62.63.91.4-1.2-2.0-1.7
Condit. Reinf. active responses0.10.10.20.4-0.3-0.40.2
Condit. Reinf. inactive responses0.40.61.5-0.50.30.81.2
Condit. Reinf. lever presses0.30.41.50.10.10.11.2
Condit. Reinf. lever reinforcers received0.10.10.20.5-0.4-0.20.4
Conditioned reinforcement - actives0.10.40.7-0.60.8-0.1-0.6
Conditioned reinforcement - inactives0.20.51.3-0.81.1-0.3-0.0
Conditioned locomotion0.10.20.50.3-0.3-0.1-0.7
Patch foraging indifference point 0 sec0.51.52.0-1.21.41.11.2
Patch foraging indifference point AUC0.41.02.50.7-0.3-1.6-0.8
Delay disc. indifference point, 0s delay1.11.31.70.9-1.1-1.2-1.3
Delay disc. indifference point, 16s delay0.71.02.1-1.41.40.1-0.1
Delay disc. indifference point, 2s delay1.71.93.91.0-0.2-1.7-2.0
Delay disc. indifference point, 24s delay0.00.00.1-0.30.20.0-0.2
Delay disc. indifference point, 4s delay2.72.85.01.3-1.3-1.7-2.2
Delay disc. indifference point, 8s delay0.00.10.20.00.10.5-0.3
Indifference point function ln k0.10.30.50.7-0.60.4-0.1
Indifference point function log k0.10.30.50.7-0.60.4-0.1
Patch foraging total patch changes 0 sec0.51.62.5-1.31.60.91.2
Patch foraging total patch changes 12 sec0.91.22.0-1.21.40.51.0
Patch foraging total patch changes 18 sec1.84.36.9-2.22.61.51.8
Patch foraging total patch changes 24 sec1.55.26.4-2.51.92.32.3
Patch foraging total patch changes 6 sec1.11.92.8-1.71.71.20.8
Patch foraging time to switch 0 sec0.41.52.8-1.71.31.00.6
Patch foraging water rate 0 sec0.00.10.10.30.2-0.20.2
Patch foraging water rate 12 sec0.10.50.8-0.80.70.10.9
Patch foraging water rate 18 sec0.00.10.30.30.1-0.6-0.0
Patch foraging water rate 24 sec0.10.10.30.00.5-0.40.1
Patch foraging water rate 6 sec0.30.40.8-0.90.6-0.40.6
Seeking ratio, delayed vs. immediate footshock0.60.82.10.5-0.6-1.5-0.8
Distance traveled before self-admin0.61.32.01.4-1.4-1.0-0.4
Distance traveled after self-admin0.81.51.81.3-1.3-1.1-1.1
Extensor digitorum longus weight0.31.32.41.5-1.60.7-0.0
Bone: elastic displacement0.10.20.3-0.6-0.2-0.3-0.4
Bone: elastic work0.40.61.0-0.0-1.0-0.6-1.0
Bone: endosteal estimation4.911.918.04.2-3.9-2.3-3.0
Bone: endosteal perimeter2.76.512.23.5-3.2-1.6-1.0
Epididymis fat weight4.221.339.1-6.26.31.62.4
Delta time in closed arm before/after self-admin0.10.10.1-0.20.30.2-0.3
Delta time in open arm before/after self-admin0.10.20.30.5-0.2-0.5-0.1
Diff in mean of infusions in LGA sessions1.32.34.4-1.31.12.11.4
Delay discount exponential model param0.40.61.9-0.30.20.61.4
Extinction: sum of active levers before priming0.40.60.9-0.90.50.80.8
Active lever presses in extinction session 60.90.92.9-1.70.80.30.2
Bone: final force0.20.30.7-0.20.30.6-0.8
Bone: final moment0.10.20.4-0.00.20.5-0.7
Food consumed during 24 hour testing period1.22.32.61.6-1.6-1.3-1.6
Glucose4.06.411.23.3-3.2-1.8-0.8
Heart weight0.50.81.60.6-0.3-1.3-1.2
Delay discount hyperbolic model param0.50.72.1-0.30.10.71.5
Intermittent access intake day 1-15 change0.00.10.20.10.5-0.3-0.2
Intermittent access intake escalation0.10.40.7-0.20.8-0.8-0.5
Intermittent access intake escalation 20.40.61.51.2-0.5-0.5-0.6
Intermitt. access day 1 inactive lever presses0.11.62.91.5-1.7-0.6-1.0
Intermitt. access day 15 inactive lever presses0.20.91.41.1-0.7-0.5-1.2
Intermitt. access escalation Index0.20.71.7-0.4-0.41.31.0
Intermittent access day 1 total infusions0.41.22.2-1.51.30.90.6
Intermittent access day 15 total infusions0.40.91.9-1.11.4-0.5-0.2
Intermittent access terminal intake (last 3 days)0.61.12.8-1.21.7-0.4-0.2
Intermittent access total infusions0.50.61.4-1.01.2-0.5-0.1
Intermittent access day 1 locomotion0.10.20.5-0.2-0.10.1-0.7
Intermittent access day 15 total locomotion0.52.14.10.8-0.8-1.7-2.0
Intermittent access total locomotion1.51.83.40.6-0.4-1.8-1.8
Intermittent access standard deviation0.10.61.0-0.11.0-0.9-0.6
Left kidney weight0.97.214.71.9-1.6-3.8-2.8
Right kidney weight1.611.221.02.5-2.1-4.6-3.7
Cocaine induced anxiety0.41.22.51.6-1.5-0.1-0.3
Post-drug Anxiety0.30.30.80.9-0.5-0.1-0.2
Baseline Anxiety1.62.75.1-1.92.30.61.3
Tail length3.921.126.34.7-4.5-5.1-4.0
Length with tail6.127.234.55.9-5.5-4.8-4.6
Length without tail2.211.314.13.6-3.4-2.6-3.8
Times rat made contact with spout2.32.73.8-1.91.51.41.6
Lifetime Intake0.30.40.7-0.80.8-0.5-0.2
Liver weight, left4.47.611.13.3-3.3-2.3-1.8
Liver weight, right6.611.513.03.6-3.6-3.3-3.0
Locomotor activity3.45.39.83.1-2.3-2.0-1.5
Locomotor testing distance0.61.63.51.9-1.4-0.7-0.5
Locomotor testing rearing0.41.53.21.8-1.3-0.5-0.9
Locomotion in novel chamber0.20.30.70.4-0.8-0.5-0.1
Locomotion in novel chamber post-restriction0.10.40.80.1-0.3-0.9-0.9
Fecal boli incidents, locomotor time 10.20.50.8-0.40.40.90.8
Change in fecal boli incidents, locomotor task1.31.32.80.7-0.7-1.3-1.7
Time >=10cm from walls, locomotor time 11.31.62.01.4-1.4-0.9-1.3
Bouts of movement, locomotor time 10.50.71.50.7-0.71.20.4
Total resting periods, locomotor time 10.50.60.90.9-0.80.9-0.0
Rest time, locomotor task time 10.91.52.21.5-1.50.0-1.3
Distance moved, locomotor task time 10.10.30.4-0.60.5-0.10.6
Vertical activity count, locomotor time 10.00.20.3-0.40.4-0.50.5
Time >=10cm from walls, locomotor time 20.30.92.01.0-1.40.0-0.7
Bouts of movement, locomotor time 21.13.58.12.0-2.8-0.8-1.2
Total resting periods, locomotor time 21.04.09.02.3-3.0-0.8-1.2
Rest time, locomotor task time 21.93.26.32.5-2.2-0.4-1.2
Distance moved, locomotor task time 21.11.53.0-1.61.70.00.9
Vertical activity count, locomotor time 20.30.61.0-1.00.80.00.9
Light reinforcement 10.10.51.1-0.8-0.01.00.5
Light reinforcement 20.71.62.61.2-1.6-0.9-1.3
Bone: marrow area4.711.517.34.2-3.8-2.3-3.0
Bone: maximum diameter2.04.07.52.7-2.6-1.0-0.8
Bone: maximum force0.20.41.10.4-0.40.5-1.1
Bone: maximum moment0.20.40.90.6-0.50.4-0.9
Mean time between licks in bursts0.63.46.22.5-2.1-1.3-1.3
Mean num. licks in bursts1.12.94.2-1.91.22.11.6
Cd content in liver0.50.50.7-0.80.60.70.6
Co content in liver0.91.11.7-1.31.30.90.4
Cu content in liver2.83.35.0-2.21.51.22.2
Fe content in liver0.20.31.0-1.00.4-0.3-0.2
K content in liver0.80.81.3-0.90.90.41.1
Mg content in liver0.20.20.30.5-0.3-0.30.6
Mn content in liver1.61.83.81.9-1.7-0.7-0.1
Na content in liver0.91.12.0-1.21.4-0.20.8
Rb content in liver0.40.51.5-0.50.00.41.2
Se content in liver3.23.88.22.2-2.9-0.9-1.1
Sr content in liver1.61.42.70.9-1.0-1.6-0.9
Zn content in liver0.50.51.20.4-1.10.70.6
Bone: minimum diameter2.85.49.63.0-3.1-1.2-1.4
Time in familiar zone, hab. session 14.04.45.8-2.32.41.62.0
Time in novel zone, hab. session 13.03.35.32.2-2.3-1.1-1.4
Total zone transitions, hab. session 10.50.71.5-0.50.31.01.2
Total locomotion distance, hab. session 10.50.71.2-0.70.41.11.0
Locomotion velocity, hab. session 10.50.60.9-0.90.70.70.9
Time in familiar zone, hab. session 21.01.11.6-1.01.00.91.3
Time in novel zone, hab. session 20.40.50.90.7-0.6-0.4-1.0
Total zone transitions, hab. session 20.40.41.0-0.71.00.10.5
Total locomotion distance, hab. session 20.91.21.4-1.11.20.91.2
Locomotion velocity, hab. session 20.91.11.7-1.01.10.81.3
Novel to familiar place preference ratio0.10.10.2-0.40.30.3-0.2
Novelty place preference0.00.10.2-0.2-0.10.1-0.4
Time in novel zone, NPP test0.10.10.40.0-0.3-0.1-0.6
Total zone transitions, NPP test0.60.81.7-0.40.21.21.3
Total locomotion distance, NPP test0.91.31.7-1.10.91.31.3
Locomotion velocity, NPP test1.62.23.1-1.41.11.61.8
Intraocular pressure0.20.30.7-0.30.10.70.8
Delta distance traveled before/after self-admin0.30.31.10.0-0.1-0.2-1.0
Delta ambulatory time before/after self-admin0.20.30.90.3-0.3-0.4-0.9
Parametrial fat weight0.41.02.30.5-0.4-1.5-1.1
Pavlov. Cond. lever latency1.92.44.8-2.21.90.70.8
Pavlov. Cond. magazine entry latency1.41.82.81.7-1.6-1.4-0.5
Pavlov. Cond. change in total contacts2.32.53.61.9-1.5-1.3-1.5
Pavlov. Cond. index score2.02.64.62.1-2.0-1.1-0.8
Pavlov. Cond. latency score2.33.05.02.2-2.1-1.4-0.9
Pavlov. Cond. lever contacts2.22.64.92.2-2.0-0.9-1.0
Pavlov. Cond. magazine entry number0.81.01.5-1.21.21.10.1
Pavlov. Cond. intertrial magazine entries2.63.14.4-1.81.62.11.4
Pavlov. Cond. lever-magazine prob. diff.1.72.14.02.0-1.9-0.7-0.6
Pavlov. Cond. response bias1.51.93.41.9-1.7-0.9-0.5
Pavlov. Cond. lever latency0.30.41.00.6-0.6-0.3-1.0
Pavlov. Cond. magazine entry latency0.40.60.80.7-0.7-0.9-0.7
Pavlov. Cond. change in total contacts0.00.10.2-0.20.1-0.5-0.1
Pavlov. Cond. index score0.10.10.30.3-0.2-0.50.0
Pavlov. Cond. latency score0.00.10.30.1-0.1-0.50.0
Pavlov. Cond. lever contacts0.20.30.7-0.50.5-0.10.8
Pavlov. Cond. magazine entry number0.20.30.7-0.40.30.80.5
Pavlov. Cond. intertrial magazine entries0.20.51.21.1-0.8-0.0-0.1
Pavlov. Cond. lever-magazine prob. diff.0.00.10.10.2-0.2-0.30.1
Pavlov. Cond. response bias0.10.10.20.2-0.1-0.40.3
Time in closed arm before self-admin0.20.30.8-0.40.9-0.4-0.0
Time in closed arm after self-admin0.80.91.9-1.11.4-0.4-0.5
Time in open arm before self-admin0.20.20.60.4-0.7-0.30.1
Time in open arm after self-admin0.50.51.01.0-0.9-0.20.4
Bone: periosteal estimation2.76.49.83.1-3.0-1.3-2.3
Bone: periosteal perimeter1.73.36.32.5-2.2-0.8-1.3
Bone: post-yield work1.42.56.02.4-2.0-0.1-0.4
Progressive ratio test 1 active lever presses0.40.71.4-1.21.0-0.60.1
Progressive ratio test 1 breakpoint0.40.71.3-1.11.0-0.70.0
Progressive ratio test 1 inactive lever presses0.92.34.3-1.92.1-0.11.1
Progressive ratio test 2 active lever presses1.01.42.6-1.61.60.60.3
Progressive ratio test 2 breakpoint1.11.52.8-1.71.70.50.2
Progressive ratio test 2 inactive lever presses0.10.20.6-0.10.80.1-0.5
Incentive Sensitization - Responses0.41.01.3-1.11.11.10.4
Incentive Sensitization - Breakpoint0.51.11.7-1.21.11.30.4
Sum of active levers in priming session hrs 5-60.00.00.0-0.00.1-0.10.1
Progressive ratio0.92.87.00.00.8-2.6-1.8
Food seeking constrained by brief footshock0.00.00.1-0.0-0.3-0.10.3
Seeking ratio, punishment vs. effort1.02.14.7-0.1-1.02.21.7
Retroperitoneal fat weight0.21.02.50.5-0.3-1.6-0.9
Reaction time number correct0.51.95.0-1.52.20.30.4
Reaction time mean minus median1.17.110.93.3-3.3-2.0-1.6
Reaction time mean minus median AUC0.74.77.62.8-2.5-1.8-1.3
Reaction time num false alarms0.20.30.40.6-0.40.3-0.6
Reaction time num false alarms AUC0.10.30.60.8-0.40.1-0.7
Reaction time trials correct on left0.51.95.0-1.52.20.30.4
Reaction time trials on left0.51.74.6-1.42.10.20.3
Reaction time mean2.55.59.73.1-2.9-1.5-1.3
Reaction time mean AUC2.55.910.13.2-3.0-1.7-1.4
Median of all reaction times2.03.25.92.4-2.1-1.1-1.0
Reaction time omissions2.44.06.62.6-2.1-1.5-1.6
Reaction time false alarm rate1.11.52.61.6-1.6-0.1-0.8
Reaction time premature initiation rate0.40.71.50.3-0.8-1.2-0.7
Reaction time premature initiations0.20.50.9-0.60.5-0.9-0.7
Std. dev. reaction times2.58.212.63.5-3.5-2.1-2.0
Reaction time trials completed0.51.74.6-1.42.10.20.3
Reaction time trials AUC0.51.95.2-1.52.30.20.4
Run reversals in cocaine runway, females0.70.81.3-0.80.51.11.0
Run reversals in cocaine runway, males4.65.08.12.6-2.8-1.4-1.8
Latency to leave start box in cocaine runway0.20.20.5-0.10.70.2-0.5
Latency to leave start box in cocaine runway, F0.30.30.80.10.70.90.3
Latency to leave start box in cocaine runway, M1.01.02.4-0.10.4-1.2-1.5
Std. dev. time between licks in bursts1.93.56.52.6-2.2-1.0-1.3
Total sessions with >9 infusions0.20.20.6-0.80.40.1-0.3
Short access day 1 total inactive lever presses1.12.22.91.5-1.5-1.7-1.2
Short access day 10 total inactive lever presses0.00.30.80.3-0.20.40.9
Short access day 1 total infusions0.10.20.3-0.50.50.30.5
Short access day 10 total infusions0.20.30.7-0.80.70.2-0.2
Short access total infusions0.20.30.6-0.80.7-0.1-0.0
Short access day 1 locomotion0.50.81.5-0.70.51.21.0
Short access day 10 total locomotion0.41.82.81.4-1.7-1.0-1.2
Short access total locomotion0.20.20.50.2-0.6-0.1-0.7
One hour access (0.3 mA shock)0.70.91.3-0.90.90.81.1
Compulsive drug intake0.50.82.00.3-0.71.40.8
One hour access (shock baseline)0.10.40.7-0.40.7-0.9-0.1
Social response proportion0.20.30.60.8-0.7-0.2-0.0
Social responses0.10.20.50.3-0.1-0.70.2
Social time3.04.78.62.4-2.9-1.3-1.6
Soleus weight3.08.917.23.9-4.1-0.7-1.7
Bone: stiffness0.61.14.0-0.60.42.00.1
Tibialis anterior weight0.51.73.0-1.60.81.70.8
Time to tail flick, vehicle, before self-admin0.10.10.20.40.40.00.0
Time to tail flick, vehicle, after self-admin0.10.30.70.4-0.80.30.4
Time to tail flick, test, before self-admin0.00.10.1-0.20.2-0.20.3
Time to tail flick, test, after self-admin0.40.51.00.5-0.7-1.0-0.2
Delta time to tail flick, vehicle, before/after SA0.30.30.5-0.6-0.60.70.4
Delta time to tail flick, test, before/after SA0.20.20.4-0.50.30.60.4
Tibia length2.87.910.83.3-2.7-2.3-2.8
Ambulatory time before self-admin0.20.50.70.8-0.9-0.6-0.3
Ambulatory time after self-admin0.71.11.31.1-1.1-0.9-1.0
Bone: tissue strength0.10.10.30.1-0.30.3-0.5
Total heroin consumption0.30.30.70.5-0.8-0.6-0.1
Bone: trabecular number1.93.57.5-1.70.62.71.8
Bone: trabecular spacing2.84.17.11.7-1.2-2.7-2.2
Bone: trabecular thickness1.41.93.0-1.10.91.71.6
Bone: trabecular tissue density0.30.51.00.20.6-0.7-1.0
Water consumed over 24 hours0.10.30.60.4-0.8-0.2-0.5
Number of responses in last shaping day0.10.10.20.50.1-0.50.0