Trim10

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 pVTA gene expression Trim10 0.08 0.05 4.3e-06 0.06 0.07 0.06 0.07 1.0e-05 2.3e-06 6.2e-06 4.7e-06
2 Brain gene expression Trim10 0.04 0.02 2.2e-03 0.04 0.03 0.03 0.03 2.9e-04 2.1e-03 1.1e-03 1.7e-03
3 NAcc gene expression Trim10 0.04 0.02 6.8e-04 -0 0.01 0.02 0.01 5.6e-01 5.0e-03 7.4e-04 3.9e-02
4 PL gene expression Trim10 0.05 0.03 6.2e-06 0.03 0.04 0.06 0.05 2.1e-04 1.1e-05 5.3e-07 4.5e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density2.34.09.1-1.5-0.5-3.0-2.1
Area under the delay curve0.50.61.80.30.20.61.3
BMI with tail0.41.22.1-1.4-1.40.70.6
BMI without tail0.92.67.9-0.4-0.52.81.5
Body weight2.611.516.82.72.54.04.1
Weight adjusted by age1.52.32.81.71.21.51.6
Bone surface0.71.43.11.11.8-1.10.0
Bone volume0.50.92.90.10.6-1.7-0.5
Breakpoint value in progressive ratio session0.10.10.4-0.6-0.1-0.1-0.3
Number of licking bursts0.71.12.21.10.61.50.9
Context. condit. distance diff. score0.70.92.01.40.6-0.7-0.9
Locomotion velocity, session 10.70.72.10.71.4-0.60.1
Locomotion distance, session 11.41.82.9-1.4-0.8-1.7-1.3
Locomotion velocity, session 20.30.40.60.40.70.50.8
Locomotion distance, session 20.81.12.4-0.60.1-1.6-1.2
Locomotion velocity, session 30.60.61.5-1.0-1.20.3-0.0
Locomotion distance, session 30.60.71.2-0.7-1.0-0.2-1.1
Stereotopy head waving bouts, day 32.12.42.91.61.51.41.7
Stereotopy head waving duration, day 31.01.21.81.21.10.71.3
Locomotion velocity, session 71.31.53.2-0.4-1.0-1.2-1.8
Locomotion distance, session 72.63.34.9-1.1-2.0-1.8-2.2
Stereotopy head waving bouts, day 71.31.52.91.01.01.11.7
Stereotopy head waving duration, day 71.61.93.31.01.21.41.8
Locomotion velocity, session 83.94.68.12.82.80.51.4
Locomotion distance, session 80.60.91.31.00.6-1.0-1.1
Degree of sensitization distance0.20.20.70.90.1-0.40.1
Degree of sensitization stereotypy0.30.40.80.30.40.60.9
Conditioned locomotion1.71.94.00.70.52.01.7
Cocaine response after cond. corrected0.30.41.2-0.7-0.1-1.1-0.2
Cocaine response after cond. not corrected0.60.81.20.91.10.11.0
Cocaine response before conditioning4.85.86.62.62.02.62.5
Saline control response0.40.51.1-0.8-0.51.00.4
Bone: connectivity density2.13.27.6-0.80.3-2.8-2.1
Bone: cortical apparent density0.71.01.8-1.3-1.2-0.80.0
Bone: cortical area0.40.61.01.01.00.10.7
Bone: cortical porosity0.00.00.1-0.0-0.10.40.2
Bone: cortical porosity0.40.40.60.70.50.80.5
Bone: cortical thickness0.71.12.0-1.4-1.1-1.10.0
Bone: cortical thickness2.12.55.0-2.1-2.2-0.7-0.5
Bone: cortical tissue density0.60.81.5-1.2-1.0-0.70.0
Condit. Reinf. active minus inactive responses0.10.10.3-0.10.2-0.6-0.1
Condit. Reinf. active-inactive response ratio0.20.20.3-0.5-0.1-0.20.6
Condit. Reinf. active responses0.40.50.7-0.5-0.5-0.8-0.8
Condit. Reinf. inactive responses2.63.24.8-1.4-1.9-1.6-2.2
Incentive salience index mean0.30.40.90.80.9-0.0-0.0
Condit. Reinf. lever presses0.60.81.51.21.20.1-0.5
Condit. Reinf. active minus inactive responses1.21.64.01.00.72.01.0
Condit. Reinf. active-inactive response ratio2.22.63.91.41.22.01.7
Condit. Reinf. active responses0.10.10.20.40.30.4-0.2
Condit. Reinf. inactive responses0.50.61.5-0.5-0.3-0.8-1.2
Condit. Reinf. lever presses0.30.41.50.1-0.1-0.1-1.2
Condit. Reinf. lever reinforcers received0.10.10.20.50.40.2-0.4
Conditioned reinforcement - actives0.20.40.7-0.6-0.80.10.6
Conditioned reinforcement - inactives0.30.51.3-0.8-1.10.30.0
Conditioned locomotion0.10.20.50.30.30.10.7
Patch foraging indifference point 0 sec0.81.52.0-1.2-1.4-1.1-1.2
Patch foraging indifference point AUC0.71.02.50.70.31.60.8
Delay disc. indifference point, 0s delay1.21.31.70.91.11.21.3
Delay disc. indifference point, 16s delay0.91.02.1-1.4-1.4-0.10.1
Delay disc. indifference point, 2s delay1.71.93.91.00.21.72.0
Delay disc. indifference point, 24s delay0.00.00.1-0.3-0.2-0.00.2
Delay disc. indifference point, 4s delay2.72.85.01.31.31.72.2
Delay disc. indifference point, 8s delay0.10.10.20.0-0.1-0.50.3
Indifference point function ln k0.20.30.50.70.6-0.40.1
Indifference point function log k0.20.30.50.70.6-0.40.1
Patch foraging total patch changes 0 sec0.91.62.5-1.3-1.6-0.9-1.2
Patch foraging total patch changes 12 sec0.91.22.0-1.2-1.4-0.5-1.0
Patch foraging total patch changes 18 sec2.84.36.9-2.2-2.6-1.5-1.8
Patch foraging total patch changes 24 sec3.05.26.4-2.5-1.9-2.3-2.3
Patch foraging total patch changes 6 sec1.31.92.8-1.7-1.7-1.2-0.8
Patch foraging time to switch 0 sec0.71.52.8-1.7-1.3-1.0-0.6
Patch foraging water rate 0 sec0.00.10.10.3-0.20.2-0.2
Patch foraging water rate 12 sec0.20.50.8-0.8-0.7-0.1-0.9
Patch foraging water rate 18 sec0.10.10.30.3-0.10.60.0
Patch foraging water rate 24 sec0.10.10.30.0-0.50.4-0.1
Patch foraging water rate 6 sec0.30.40.8-0.9-0.60.4-0.6
Seeking ratio, delayed vs. immediate footshock0.70.82.10.50.61.50.8
Distance traveled before self-admin1.01.32.01.41.41.00.5
Distance traveled after self-admin1.21.51.81.31.31.11.1
Extensor digitorum longus weight0.31.32.41.51.6-0.70.0
Bone: elastic displacement0.10.20.3-0.60.20.30.4
Bone: elastic work0.40.61.0-0.01.00.61.0
Bone: endosteal estimation5.411.918.04.23.92.33.0
Bone: endosteal perimeter3.16.512.23.53.21.61.0
Epididymis fat weight6.221.439.1-6.2-6.3-1.6-2.4
Delta time in closed arm before/after self-admin0.10.10.1-0.2-0.3-0.20.3
Delta time in open arm before/after self-admin0.20.20.30.50.20.50.1
Diff in mean of infusions in LGA sessions1.92.34.4-1.3-1.1-2.1-1.4
Delay discount exponential model param0.50.61.9-0.3-0.2-0.6-1.4
Extinction: sum of active levers before priming0.60.60.9-0.9-0.5-0.8-0.8
Active lever presses in extinction session 60.90.92.9-1.7-0.8-0.3-0.2
Bone: final force0.20.30.7-0.2-0.3-0.60.8
Bone: final moment0.10.20.4-0.0-0.2-0.50.7
Food consumed during 24 hour testing period1.72.32.61.61.61.31.6
Glucose4.16.411.23.33.21.80.8
Heart weight0.50.81.60.60.31.31.2
Delay discount hyperbolic model param0.60.72.1-0.3-0.1-0.7-1.4
Intermittent access intake day 1-15 change0.00.10.20.1-0.50.30.2
Intermittent access intake escalation0.20.40.7-0.2-0.80.80.5
Intermittent access intake escalation 20.50.61.51.20.50.50.6
Intermitt. access day 1 inactive lever presses0.41.62.91.51.70.61.0
Intermitt. access day 15 inactive lever presses0.40.91.41.10.70.51.2
Intermitt. access escalation Index0.50.71.7-0.40.4-1.3-1.0
Intermittent access day 1 total infusions0.81.22.2-1.5-1.3-0.9-0.6
Intermittent access day 15 total infusions0.60.91.9-1.1-1.40.50.2
Intermittent access terminal intake (last 3 days)0.81.12.8-1.2-1.70.40.1
Intermittent access total infusions0.50.61.4-1.0-1.20.50.1
Intermittent access day 1 locomotion0.10.20.5-0.20.1-0.10.7
Intermittent access day 15 total locomotion1.22.14.10.80.81.72.0
Intermittent access total locomotion1.51.83.40.60.41.81.8
Intermittent access standard deviation0.30.61.0-0.1-1.00.90.6
Left kidney weight1.57.214.71.91.63.82.8
Right kidney weight2.511.221.02.52.14.63.7
Cocaine induced anxiety0.81.22.51.61.50.10.3
Post-drug Anxiety0.30.30.80.90.50.10.2
Baseline Anxiety2.32.75.1-1.9-2.3-0.6-1.3
Tail length5.421.126.34.74.55.14.0
Length with tail6.227.234.55.95.54.84.6
Length without tail3.511.314.13.63.42.63.8
Times rat made contact with spout2.32.73.8-1.9-1.5-1.4-1.6
Lifetime Intake0.30.40.7-0.8-0.80.50.2
Liver weight, left4.67.611.13.33.32.31.8
Liver weight, right6.611.513.03.63.63.33.1
Locomotor activity3.45.39.83.12.32.01.5
Locomotor testing distance0.91.63.51.91.40.70.5
Locomotor testing rearing0.71.53.21.81.30.50.9
Locomotion in novel chamber0.20.30.70.40.80.50.1
Locomotion in novel chamber post-restriction0.20.40.80.10.30.90.9
Fecal boli incidents, locomotor time 10.30.50.8-0.4-0.4-0.9-0.8
Change in fecal boli incidents, locomotor task1.41.32.80.70.71.31.7
Time >=10cm from walls, locomotor time 11.51.62.01.41.40.91.3
Bouts of movement, locomotor time 10.60.71.50.70.7-1.2-0.4
Total resting periods, locomotor time 10.50.60.90.90.8-0.90.0
Rest time, locomotor task time 11.21.52.21.51.5-0.01.3
Distance moved, locomotor task time 10.20.30.4-0.6-0.50.1-0.6
Vertical activity count, locomotor time 10.10.20.3-0.4-0.40.5-0.5
Time >=10cm from walls, locomotor time 20.60.92.01.01.4-0.00.7
Bouts of movement, locomotor time 22.23.58.12.02.80.81.2
Total resting periods, locomotor time 22.34.09.02.33.00.81.2
Rest time, locomotor task time 22.53.26.32.52.20.41.2
Distance moved, locomotor task time 21.31.53.0-1.6-1.7-0.0-0.9
Vertical activity count, locomotor time 20.50.61.0-1.0-0.8-0.0-0.9
Light reinforcement 10.20.51.1-0.80.0-1.0-0.5
Light reinforcement 21.11.62.61.21.60.91.3
Bone: marrow area5.311.517.34.23.82.33.0
Bone: maximum diameter2.14.07.52.72.61.00.8
Bone: maximum force0.20.41.10.40.4-0.51.1
Bone: maximum moment0.20.40.90.60.5-0.40.9
Mean time between licks in bursts1.43.46.22.52.11.31.3
Mean num. licks in bursts1.92.94.2-1.9-1.2-2.1-1.6
Cd content in liver0.50.50.7-0.8-0.6-0.7-0.6
Co content in liver0.91.11.7-1.3-1.3-0.9-0.4
Cu content in liver2.83.35.0-2.2-1.5-1.2-2.2
Fe content in liver0.30.31.0-1.0-0.40.30.2
K content in liver0.80.81.3-0.9-0.9-0.4-1.1
Mg content in liver0.20.20.30.50.30.3-0.6
Mn content in liver1.61.83.81.91.70.70.1
Na content in liver1.01.12.0-1.2-1.40.2-0.8
Rb content in liver0.40.51.5-0.5-0.0-0.4-1.2
Se content in liver3.23.88.22.22.90.91.1
Sr content in liver1.61.42.70.91.01.60.9
Zn content in liver0.50.51.20.41.1-0.7-0.6
Bone: minimum diameter3.05.49.63.03.11.21.4
Time in familiar zone, hab. session 14.64.45.8-2.3-2.4-1.6-2.0
Time in novel zone, hab. session 13.33.35.32.22.31.11.4
Total zone transitions, hab. session 10.50.71.5-0.5-0.3-1.0-1.2
Total locomotion distance, hab. session 10.50.71.2-0.7-0.4-1.1-1.0
Locomotion velocity, hab. session 10.50.60.9-0.9-0.7-0.7-0.9
Time in familiar zone, hab. session 21.11.11.6-1.0-1.0-0.9-1.3
Time in novel zone, hab. session 20.50.50.90.70.60.41.0
Total zone transitions, hab. session 20.40.41.0-0.7-1.0-0.1-0.5
Total locomotion distance, hab. session 20.91.21.4-1.1-1.2-0.9-1.2
Locomotion velocity, hab. session 20.91.11.7-1.0-1.1-0.8-1.3
Novel to familiar place preference ratio0.10.10.2-0.4-0.3-0.30.2
Novelty place preference0.10.10.2-0.20.1-0.10.4
Time in novel zone, NPP test0.10.10.40.00.30.10.6
Total zone transitions, NPP test0.60.81.7-0.4-0.2-1.2-1.3
Total locomotion distance, NPP test1.01.31.7-1.1-0.9-1.3-1.3
Locomotion velocity, NPP test1.62.23.1-1.4-1.1-1.6-1.8
Intraocular pressure0.20.30.7-0.3-0.1-0.7-0.8
Delta distance traveled before/after self-admin0.30.31.10.00.10.21.0
Delta ambulatory time before/after self-admin0.20.30.90.30.30.40.9
Parametrial fat weight0.41.02.30.50.41.51.1
Pavlov. Cond. lever latency1.92.44.8-2.2-1.9-0.7-0.8
Pavlov. Cond. magazine entry latency1.41.82.81.71.61.40.5
Pavlov. Cond. change in total contacts2.32.53.61.91.51.31.5
Pavlov. Cond. index score2.02.64.62.12.01.10.8
Pavlov. Cond. latency score2.43.05.02.22.11.40.9
Pavlov. Cond. lever contacts2.22.64.92.22.00.91.0
Pavlov. Cond. magazine entry number0.81.01.5-1.2-1.2-1.1-0.1
Pavlov. Cond. intertrial magazine entries2.63.14.4-1.8-1.6-2.1-1.4
Pavlov. Cond. lever-magazine prob. diff.1.72.14.02.01.90.70.6
Pavlov. Cond. response bias1.51.93.41.91.70.90.6
Pavlov. Cond. lever latency0.30.41.00.60.60.31.0
Pavlov. Cond. magazine entry latency0.50.60.80.70.70.90.7
Pavlov. Cond. change in total contacts0.00.10.2-0.2-0.10.50.1
Pavlov. Cond. index score0.10.10.30.30.20.5-0.0
Pavlov. Cond. latency score0.10.10.30.10.10.5-0.0
Pavlov. Cond. lever contacts0.20.30.7-0.5-0.50.1-0.8
Pavlov. Cond. magazine entry number0.20.30.7-0.4-0.3-0.8-0.5
Pavlov. Cond. intertrial magazine entries0.30.51.21.10.80.00.1
Pavlov. Cond. lever-magazine prob. diff.0.00.10.10.20.20.3-0.1
Pavlov. Cond. response bias0.10.10.20.20.10.4-0.3
Time in closed arm before self-admin0.20.30.8-0.4-0.90.40.0
Time in closed arm after self-admin0.80.91.9-1.1-1.40.40.5
Time in open arm before self-admin0.20.20.60.40.70.3-0.1
Time in open arm after self-admin0.50.51.01.00.90.2-0.4
Bone: periosteal estimation3.06.49.83.13.01.32.3
Bone: periosteal perimeter1.93.36.32.52.20.81.3
Bone: post-yield work1.72.56.02.42.00.10.4
Progressive ratio test 1 active lever presses0.60.71.4-1.2-1.00.6-0.1
Progressive ratio test 1 breakpoint0.60.71.3-1.1-1.00.7-0.0
Progressive ratio test 1 inactive lever presses1.62.34.3-1.9-2.10.1-1.1
Progressive ratio test 2 active lever presses1.21.42.6-1.6-1.6-0.6-0.3
Progressive ratio test 2 breakpoint1.31.52.8-1.7-1.7-0.5-0.2
Progressive ratio test 2 inactive lever presses0.10.20.6-0.1-0.8-0.10.5
Incentive Sensitization - Responses0.71.01.3-1.1-1.1-1.1-0.4
Incentive Sensitization - Breakpoint0.91.11.7-1.2-1.1-1.3-0.4
Sum of active levers in priming session hrs 5-60.00.00.0-0.0-0.10.1-0.1
Progressive ratio1.82.87.00.0-0.82.61.8
Food seeking constrained by brief footshock0.00.00.1-0.00.30.1-0.3
Seeking ratio, punishment vs. effort1.52.14.7-0.11.0-2.2-1.7
Retroperitoneal fat weight0.21.02.50.50.31.60.9
Reaction time number correct1.01.95.0-1.5-2.2-0.3-0.4
Reaction time mean minus median2.97.110.93.33.32.01.6
Reaction time mean minus median AUC1.94.77.62.82.51.81.3
Reaction time num false alarms0.20.30.40.60.4-0.30.6
Reaction time num false alarms AUC0.20.30.60.80.4-0.10.7
Reaction time trials correct on left1.01.95.0-1.5-2.2-0.3-0.4
Reaction time trials on left0.91.74.6-1.4-2.1-0.2-0.3
Reaction time mean3.55.59.73.12.91.51.3
Reaction time mean AUC3.75.910.13.23.01.71.4
Median of all reaction times2.23.25.92.42.11.11.0
Reaction time omissions2.74.06.62.62.11.51.6
Reaction time false alarm rate1.11.52.61.61.60.10.8
Reaction time premature initiation rate0.50.71.50.30.81.20.7
Reaction time premature initiations0.30.50.9-0.6-0.50.90.7
Std. dev. reaction times4.58.212.63.53.52.12.0
Reaction time trials completed0.91.74.6-1.4-2.1-0.2-0.3
Reaction time trials AUC1.01.95.2-1.5-2.3-0.2-0.4
Run reversals in cocaine runway, females0.80.81.3-0.8-0.5-1.1-1.0
Run reversals in cocaine runway, males5.05.08.12.62.81.41.8
Latency to leave start box in cocaine runway0.20.20.5-0.1-0.7-0.20.5
Latency to leave start box in cocaine runway, F0.30.30.80.1-0.7-0.9-0.3
Latency to leave start box in cocaine runway, M1.11.02.4-0.1-0.41.21.5
Std. dev. time between licks in bursts2.63.56.52.62.21.01.3
Total sessions with >9 infusions0.20.20.6-0.8-0.4-0.10.3
Short access day 1 total inactive lever presses1.62.22.91.51.51.71.2
Short access day 10 total inactive lever presses0.10.30.80.30.2-0.4-0.9
Short access day 1 total infusions0.10.20.3-0.5-0.5-0.3-0.5
Short access day 10 total infusions0.20.30.7-0.8-0.7-0.20.2
Short access total infusions0.20.30.6-0.8-0.70.1-0.0
Short access day 1 locomotion0.70.81.5-0.7-0.5-1.2-1.0
Short access day 10 total locomotion1.01.82.81.41.71.01.2
Short access total locomotion0.20.20.50.20.60.10.7
One hour access (0.3 mA shock)0.80.91.3-0.9-0.9-0.8-1.1
Compulsive drug intake0.70.82.00.30.7-1.4-0.8
One hour access (shock baseline)0.20.40.7-0.4-0.70.90.1
Social response proportion0.20.30.60.80.70.20.1
Social responses0.10.20.50.30.10.7-0.2
Social time3.54.78.62.42.91.31.6
Soleus weight3.08.917.23.94.10.71.7
Bone: stiffness0.71.14.0-0.6-0.4-2.0-0.1
Tibialis anterior weight0.51.73.0-1.6-0.8-1.7-0.8
Time to tail flick, vehicle, before self-admin0.10.10.20.4-0.4-0.0-0.0
Time to tail flick, vehicle, after self-admin0.20.30.70.40.8-0.3-0.4
Time to tail flick, test, before self-admin0.10.10.1-0.2-0.20.2-0.3
Time to tail flick, test, after self-admin0.40.51.00.50.71.00.2
Delta time to tail flick, vehicle, before/after SA0.40.30.5-0.60.6-0.7-0.4
Delta time to tail flick, test, before/after SA0.20.20.4-0.5-0.3-0.6-0.4
Tibia length2.97.910.83.32.72.32.8
Ambulatory time before self-admin0.30.50.70.80.90.60.3
Ambulatory time after self-admin0.91.11.31.11.10.91.0
Bone: tissue strength0.10.10.30.10.3-0.30.5
Total heroin consumption0.30.30.70.50.80.60.1
Bone: trabecular number2.13.57.5-1.7-0.6-2.7-1.8
Bone: trabecular spacing3.14.17.11.71.22.72.2
Bone: trabecular thickness1.51.93.0-1.1-0.9-1.7-1.6
Bone: trabecular tissue density0.30.51.00.2-0.60.71.0
Water consumed over 24 hours0.20.30.60.40.80.20.5
Number of responses in last shaping day0.10.10.20.5-0.10.5-0.0