Tmem258

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose mRNA stability Tmem258 0.04 0.02 5.9e-05 0.02 0.03 0.03 0.02 2.1e-03 3.7e-04 7.8e-04 1.5e-03
2 pVTA mRNA stability Tmem258 0.06 0.04 4.4e-03 0.05 0.04 0.04 0.04 3.2e-03 8.8e-03 5.2e-03 8.6e-03
3 LHb mRNA stability Tmem258 0.15 0.11 7.1e-03 0.02 0.01 -0 -0.01 9.5e-02 2.0e-01 3.8e-01 5.4e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.20.30.80.2-0.30.9
Area under the delay curve0.40.40.90.3-0.51.0
BMI with tail1.03.28.2-1.1-2.90.4
BMI without tail0.91.83.6-1.2-1.9-0.7
Body weight2.08.317.9-2.7-4.2-0.2
Weight adjusted by age1.92.12.4-1.5-1.3-1.5
Bone surface0.61.01.6-0.4-1.21.1
Bone volume0.40.72.00.1-0.51.4
Breakpoint value in progressive ratio session3.03.34.5-2.1-1.4-1.9
Number of licking bursts0.10.20.50.20.00.7
Context. condit. distance diff. score0.10.10.10.30.30.2
Locomotion velocity, session 10.30.41.0-0.3-0.2-1.0
Locomotion distance, session 10.81.01.2-0.8-1.1-1.0
Locomotion velocity, session 21.92.23.9-1.5-2.0-0.6
Locomotion distance, session 20.81.11.2-1.0-1.0-1.1
Locomotion velocity, session 30.50.61.20.3-0.71.1
Locomotion distance, session 30.10.10.30.3-0.10.6
Stereotopy head waving bouts, day 30.20.30.30.6-0.40.6
Stereotopy head waving duration, day 30.10.20.30.3-0.40.5
Locomotion velocity, session 70.40.41.10.4-0.11.1
Locomotion distance, session 70.10.20.40.4-0.10.6
Stereotopy head waving bouts, day 70.10.10.2-0.2-0.40.3
Stereotopy head waving duration, day 71.11.32.4-1.2-1.6-0.0
Locomotion velocity, session 80.20.20.2-0.4-0.4-0.5
Locomotion distance, session 80.00.00.10.30.00.1
Degree of sensitization distance0.10.10.10.4-0.10.3
Degree of sensitization stereotypy0.50.50.7-0.9-0.9-0.1
Conditioned locomotion0.70.81.2-0.9-1.1-0.6
Cocaine response after cond. corrected0.30.40.80.40.5-0.9
Cocaine response after cond. not corrected0.40.40.60.60.7-0.6
Cocaine response before conditioning0.10.10.2-0.00.40.4
Saline control response2.12.83.4-1.9-1.7-1.4
Bone: connectivity density0.50.92.0-0.7-1.40.3
Bone: cortical apparent density0.70.91.2-1.1-0.7-1.0
Bone: cortical area0.20.30.5-0.5-0.70.4
Bone: cortical porosity0.20.20.3-0.5-0.1-0.5
Bone: cortical porosity0.50.60.9-0.9-0.5-0.7
Bone: cortical thickness2.84.66.2-2.5-2.2-1.7
Bone: cortical thickness0.60.60.9-1.0-0.7-0.8
Bone: cortical tissue density0.91.11.5-1.2-0.8-1.1
Condit. Reinf. active minus inactive responses1.11.21.9-1.0-0.8-1.4
Condit. Reinf. active-inactive response ratio1.81.94.1-1.2-0.5-2.0
Condit. Reinf. active responses0.40.50.7-0.6-0.7-0.8
Condit. Reinf. inactive responses0.40.40.70.70.30.8
Incentive salience index mean0.40.50.8-0.6-0.9-0.6
Condit. Reinf. lever presses0.20.30.70.1-0.50.8
Condit. Reinf. active minus inactive responses0.30.40.70.50.8-0.4
Condit. Reinf. active-inactive response ratio0.50.50.70.80.80.5
Condit. Reinf. active responses0.00.10.10.10.3-0.3
Condit. Reinf. inactive responses0.00.00.1-0.10.1-0.3
Condit. Reinf. lever presses0.10.20.3-0.5-0.50.3
Condit. Reinf. lever reinforcers received0.10.20.4-0.30.1-0.6
Conditioned reinforcement - actives1.41.42.81.11.70.1
Conditioned reinforcement - inactives1.21.31.61.31.11.1
Conditioned locomotion2.12.53.21.81.41.5
Patch foraging indifference point 0 sec0.40.61.1-0.8-1.0-0.4
Patch foraging indifference point AUC1.31.52.2-1.4-1.5-0.6
Delay disc. indifference point, 0s delay0.60.71.30.9-0.21.1
Delay disc. indifference point, 16s delay0.10.10.30.2-0.20.6
Delay disc. indifference point, 2s delay1.21.32.51.20.31.6
Delay disc. indifference point, 24s delay0.10.10.2-0.0-0.50.4
Delay disc. indifference point, 4s delay0.70.71.20.0-1.11.0
Delay disc. indifference point, 8s delay0.30.30.70.5-0.10.8
Indifference point function ln k2.94.15.72.42.11.5
Indifference point function log k2.94.15.72.42.11.5
Patch foraging total patch changes 0 sec0.50.81.1-0.9-1.1-0.6
Patch foraging total patch changes 12 sec6.17.910.5-3.1-3.2-1.8
Patch foraging total patch changes 18 sec0.70.91.0-1.0-1.0-0.9
Patch foraging total patch changes 24 sec4.96.011.1-2.5-3.3-0.6
Patch foraging total patch changes 6 sec0.71.02.2-0.9-1.50.0
Patch foraging time to switch 0 sec0.20.30.5-0.0-0.60.7
Patch foraging water rate 0 sec0.30.41.00.51.0-0.2
Patch foraging water rate 12 sec0.81.22.11.31.40.3
Patch foraging water rate 18 sec0.40.60.90.90.70.6
Patch foraging water rate 24 sec0.71.01.81.01.30.2
Patch foraging water rate 6 sec0.40.61.00.91.00.0
Seeking ratio, delayed vs. immediate footshock0.10.20.40.2-0.10.6
Distance traveled before self-admin1.11.11.6-1.2-1.2-0.6
Distance traveled after self-admin0.10.10.1-0.3-0.3-0.1
Extensor digitorum longus weight3.714.625.0-4.1-5.0-1.4
Bone: elastic displacement0.50.61.3-0.00.6-1.1
Bone: elastic work1.51.92.6-1.4-1.1-1.6
Bone: endosteal estimation3.06.59.12.71.73.0
Bone: endosteal perimeter4.69.613.03.22.33.6
Epididymis fat weight1.53.46.41.80.92.5
Delta time in closed arm before/after self-admin3.33.24.3-1.8-2.1-1.4
Delta time in open arm before/after self-admin0.80.81.3-1.1-0.7-0.8
Diff in mean of infusions in LGA sessions2.62.94.0-2.0-1.3-1.7
Delay discount exponential model param0.40.51.0-0.40.5-1.0
Extinction: sum of active levers before priming2.42.33.3-1.8-1.7-0.9
Active lever presses in extinction session 62.02.03.1-1.8-1.1-1.2
Bone: final force0.61.02.0-1.1-1.4-0.1
Bone: final moment0.61.01.8-1.0-1.4-0.1
Food consumed during 24 hour testing period0.20.20.40.40.6-0.3
Glucose2.84.26.72.62.01.5
Heart weight0.71.01.31.10.51.2
Delay discount hyperbolic model param0.50.51.2-0.40.5-1.1
Intermittent access intake day 1-15 change0.70.71.70.61.3-0.2
Intermittent access intake escalation0.40.41.00.41.0-0.3
Intermittent access intake escalation 20.20.20.3-0.30.3-0.6
Intermitt. access day 1 inactive lever presses2.12.33.01.71.11.7
Intermitt. access day 15 inactive lever presses1.31.43.30.9-0.11.8
Intermitt. access escalation Index0.90.81.60.90.11.2
Intermittent access day 1 total infusions3.23.77.01.90.72.6
Intermittent access day 15 total infusions3.94.45.42.31.92.0
Intermittent access terminal intake (last 3 days)1.51.62.21.30.91.5
Intermittent access total infusions2.22.43.61.71.01.9
Intermittent access day 1 locomotion2.12.24.81.3-0.12.2
Intermittent access day 15 total locomotion0.80.91.80.90.31.3
Intermittent access total locomotion2.83.27.01.60.32.6
Intermittent access standard deviation0.91.01.40.11.2-1.2
Left kidney weight0.51.53.90.6-0.42.0
Right kidney weight0.30.81.90.3-0.61.4
Cocaine induced anxiety0.30.40.6-0.6-0.4-0.7
Post-drug Anxiety0.60.60.8-0.8-0.6-0.9
Baseline Anxiety0.90.91.2-1.0-1.1-0.7
Tail length1.23.54.7-2.2-2.0-1.4
Length with tail1.45.09.4-2.4-3.1-0.1
Length without tail0.81.73.5-1.1-1.90.6
Times rat made contact with spout0.70.81.4-0.9-0.4-1.2
Lifetime Intake1.51.72.51.50.81.6
Liver weight, left0.30.40.60.80.70.4
Liver weight, right0.10.10.20.50.20.0
Locomotor activity0.20.30.50.50.5-0.7
Locomotor testing distance0.30.50.70.70.5-0.8
Locomotor testing rearing0.50.81.20.81.1-0.7
Locomotion in novel chamber3.03.74.42.11.81.8
Locomotion in novel chamber post-restriction0.70.91.90.91.4-0.2
Fecal boli incidents, locomotor time 10.30.30.80.40.9-0.0
Change in fecal boli incidents, locomotor task0.80.71.21.10.30.9
Time >=10cm from walls, locomotor time 13.13.23.51.91.81.7
Bouts of movement, locomotor time 12.22.44.3-1.7-0.3-2.1
Total resting periods, locomotor time 11.31.42.2-1.4-0.3-1.5
Rest time, locomotor task time 10.70.81.40.81.20.5
Distance moved, locomotor task time 10.10.10.2-0.2-0.40.1
Vertical activity count, locomotor time 10.50.50.70.80.80.4
Time >=10cm from walls, locomotor time 20.20.20.60.40.70.2
Bouts of movement, locomotor time 23.33.55.7-1.9-1.1-2.4
Total resting periods, locomotor time 22.52.75.0-1.5-0.8-2.2
Rest time, locomotor task time 21.51.72.91.41.70.4
Distance moved, locomotor task time 20.30.30.5-0.7-0.6-0.3
Vertical activity count, locomotor time 20.20.30.6-0.40.0-0.8
Light reinforcement 10.10.20.40.40.6-0.1
Light reinforcement 21.41.93.31.30.91.8
Bone: marrow area3.26.99.42.81.83.1
Bone: maximum diameter0.40.72.00.4-0.11.4
Bone: maximum force0.81.32.5-0.7-1.61.0
Bone: maximum moment0.71.22.3-0.7-1.50.9
Mean time between licks in bursts1.11.51.9-1.2-1.1-1.4
Mean num. licks in bursts0.70.92.2-0.50.1-1.5
Cd content in liver0.80.81.41.11.2-0.1
Co content in liver0.81.02.10.51.4-0.8
Cu content in liver0.30.40.7-0.7-0.9-0.1
Fe content in liver0.00.00.0-0.1-0.0-0.1
K content in liver0.50.50.8-0.1-0.90.8
Mg content in liver0.20.20.30.3-0.50.5
Mn content in liver0.91.01.9-1.0-1.40.2
Na content in liver0.10.10.2-0.4-0.5-0.2
Rb content in liver1.31.62.41.51.30.9
Se content in liver0.20.30.5-0.3-0.50.7
Sr content in liver6.76.17.4-2.7-2.6-2.1
Zn content in liver3.84.24.8-2.1-2.2-1.8
Bone: minimum diameter2.54.77.42.21.32.7
Time in familiar zone, hab. session 10.00.00.10.00.10.3
Time in novel zone, hab. session 10.70.71.30.81.1-0.1
Total zone transitions, hab. session 10.60.91.0-1.0-0.8-1.0
Total locomotion distance, hab. session 10.00.00.10.30.0-0.0
Locomotion velocity, hab. session 10.20.30.4-0.4-0.6-0.5
Time in familiar zone, hab. session 20.40.40.90.51.0-0.1
Time in novel zone, hab. session 20.50.51.0-0.6-1.0-0.3
Total zone transitions, hab. session 20.91.21.7-1.0-1.3-1.0
Total locomotion distance, hab. session 20.10.10.2-0.1-0.4-0.5
Locomotion velocity, hab. session 20.00.00.00.1-0.2-0.2
Novel to familiar place preference ratio1.51.53.1-1.2-1.8-0.1
Novelty place preference0.90.92.0-0.9-1.40.1
Time in novel zone, NPP test1.11.12.2-1.0-1.5-0.2
Total zone transitions, NPP test1.62.32.5-1.6-1.5-1.5
Total locomotion distance, NPP test0.20.30.4-0.4-0.6-0.5
Locomotion velocity, NPP test0.10.20.3-0.3-0.5-0.4
Intraocular pressure0.10.20.4-0.20.4-0.6
Delta distance traveled before/after self-admin0.40.40.70.70.80.1
Delta ambulatory time before/after self-admin0.40.40.70.70.9-0.1
Parametrial fat weight3.97.611.92.81.83.4
Pavlov. Cond. lever latency0.30.30.80.40.9-0.2
Pavlov. Cond. magazine entry latency0.20.20.4-0.4-0.70.4
Pavlov. Cond. change in total contacts0.00.00.0-0.1-0.10.0
Pavlov. Cond. index score0.10.10.2-0.3-0.40.0
Pavlov. Cond. latency score0.00.10.1-0.1-0.30.2
Pavlov. Cond. lever contacts0.10.10.20.1-0.20.5
Pavlov. Cond. magazine entry number0.20.20.50.70.40.3
Pavlov. Cond. intertrial magazine entries0.40.51.2-0.5-0.1-1.1
Pavlov. Cond. lever-magazine prob. diff.0.20.20.3-0.5-0.6-0.1
Pavlov. Cond. response bias0.10.10.2-0.5-0.50.1
Pavlov. Cond. lever latency0.10.10.20.10.3-0.4
Pavlov. Cond. magazine entry latency2.83.24.6-2.1-1.8-1.3
Pavlov. Cond. change in total contacts0.20.30.6-0.8-0.5-0.3
Pavlov. Cond. index score0.81.01.6-1.3-1.2-0.4
Pavlov. Cond. latency score0.70.81.2-1.1-1.1-0.2
Pavlov. Cond. lever contacts0.10.20.3-0.5-0.2-0.5
Pavlov. Cond. magazine entry number4.25.17.22.72.51.4
Pavlov. Cond. intertrial magazine entries1.01.31.81.31.30.6
Pavlov. Cond. lever-magazine prob. diff.1.01.32.0-1.4-1.2-0.5
Pavlov. Cond. response bias0.70.91.4-1.2-0.9-0.7
Time in closed arm before self-admin0.40.50.80.60.50.9
Time in closed arm after self-admin0.10.10.20.40.30.3
Time in open arm before self-admin0.10.20.20.40.3-0.5
Time in open arm after self-admin0.60.71.5-0.70.0-1.2
Bone: periosteal estimation1.12.34.91.40.52.2
Bone: periosteal perimeter0.50.91.50.90.51.2
Bone: post-yield work3.44.68.82.10.93.0
Progressive ratio test 1 active lever presses1.31.41.61.31.21.1
Progressive ratio test 1 breakpoint1.31.31.71.21.30.9
Progressive ratio test 1 inactive lever presses0.20.30.5-0.0-0.70.6
Progressive ratio test 2 active lever presses2.02.22.61.61.31.5
Progressive ratio test 2 breakpoint2.73.03.61.91.71.6
Progressive ratio test 2 inactive lever presses1.51.72.91.40.71.7
Incentive Sensitization - Responses0.30.30.70.40.00.9
Incentive Sensitization - Breakpoint0.60.61.30.60.11.2
Sum of active levers in priming session hrs 5-60.90.91.4-1.2-0.5-1.0
Progressive ratio0.20.20.50.40.30.7
Food seeking constrained by brief footshock0.10.10.20.10.1-0.4
Seeking ratio, punishment vs. effort0.20.30.7-0.3-0.3-0.8
Retroperitoneal fat weight3.812.416.93.82.54.1
Reaction time number correct0.50.70.9-0.8-0.7-0.9
Reaction time mean minus median0.40.60.8-0.9-0.4-0.9
Reaction time mean minus median AUC0.81.12.1-1.0-0.2-1.5
Reaction time num false alarms0.10.10.2-0.10.0-0.5
Reaction time num false alarms AUC0.40.60.7-0.8-0.7-0.8
Reaction time trials correct on left0.50.70.9-0.8-0.7-0.9
Reaction time trials on left0.60.81.1-0.9-0.7-1.0
Reaction time mean0.20.20.5-0.30.4-0.7
Reaction time mean AUC0.20.20.50.00.7-0.5
Median of all reaction times0.00.10.1-0.20.2-0.3
Reaction time omissions0.30.40.7-0.8-0.4-0.7
Reaction time false alarm rate0.00.00.0-0.0-0.10.1
Reaction time premature initiation rate1.92.55.2-1.3-2.30.8
Reaction time premature initiations2.63.77.0-2.0-2.6-0.2
Std. dev. reaction times0.40.51.1-0.50.4-1.1
Reaction time trials completed0.60.81.1-0.9-0.7-1.0
Reaction time trials AUC0.40.60.9-0.8-0.6-0.9
Run reversals in cocaine runway, females0.60.61.2-0.0-1.10.8
Run reversals in cocaine runway, males0.50.50.60.80.60.6
Latency to leave start box in cocaine runway2.32.44.81.50.62.2
Latency to leave start box in cocaine runway, F0.50.51.30.5-0.11.1
Latency to leave start box in cocaine runway, M3.83.74.42.11.81.8
Std. dev. time between licks in bursts0.10.10.20.40.20.2
Total sessions with >9 infusions1.61.82.41.51.01.4
Short access day 1 total inactive lever presses1.31.52.11.30.81.4
Short access day 10 total inactive lever presses1.11.21.81.41.20.6
Short access day 1 total infusions0.70.71.01.00.70.8
Short access day 10 total infusions2.02.24.51.50.22.1
Short access total infusions0.70.81.31.00.21.2
Short access day 1 locomotion0.20.20.40.1-0.50.7
Short access day 10 total locomotion0.70.81.90.8-0.11.4
Short access total locomotion0.60.71.40.3-0.61.2
One hour access (0.3 mA shock)3.74.35.62.42.01.8
Compulsive drug intake3.13.24.9-1.7-1.3-2.2
One hour access (shock baseline)5.56.47.32.72.62.3
Social response proportion0.20.20.50.1-0.30.7
Social responses0.10.10.2-0.5-0.2-0.2
Social time0.60.81.7-0.8-0.3-1.3
Soleus weight1.95.58.52.72.90.8
Bone: stiffness0.20.40.8-0.2-0.60.9
Tibialis anterior weight7.625.936.4-5.7-6.0-3.1
Time to tail flick, vehicle, before self-admin0.40.50.90.1-0.70.9
Time to tail flick, vehicle, after self-admin0.40.41.1-0.5-1.0-0.1
Time to tail flick, test, before self-admin0.50.51.00.3-0.61.0
Time to tail flick, test, after self-admin0.00.00.10.20.3-0.1
Delta time to tail flick, vehicle, before/after SA0.20.20.3-0.3-0.3-0.6
Delta time to tail flick, test, before/after SA1.11.02.2-0.80.3-1.5
Tibia length0.51.53.0-1.2-1.70.1
Ambulatory time before self-admin0.80.81.3-1.1-0.9-0.6
Ambulatory time after self-admin0.20.20.50.3-0.00.7
Bone: tissue strength0.50.50.80.70.90.3
Total heroin consumption5.26.18.1-2.8-2.1-2.4
Bone: trabecular number0.30.40.7-0.1-0.80.8
Bone: trabecular spacing0.81.02.7-0.30.6-1.6
Bone: trabecular thickness1.01.21.91.00.91.4
Bone: trabecular tissue density2.23.15.21.92.30.8
Water consumed over 24 hours0.20.30.5-0.7-0.5-0.0
Number of responses in last shaping day0.30.30.4-0.5-0.5-0.6