Tmem216

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression Tmem216 0.14 0.07 1.7e-05 0.03 0.04 0.05 0.04 6.0e-04 3.0e-05 3.8e-06 9.2e-06
2 Adipose gene expression Tmem216 0.13 0.07 1.6e-03 0 0 0.01 0 2.1e-01 8.6e-02 1.2e-02 1.8e-01
3 Adipose mRNA stability Tmem216 0.16 0.09 4.4e-03 0.02 0.01 0.02 0.01 2.2e-03 3.1e-02 5.6e-03 9.8e-03
4 PL mRNA stability Tmem216 0.06 0.03 1.5e-06 0.03 0.05 0.05 0.05 1.2e-04 1.2e-06 4.1e-06 8.3e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.20.31.0-0.5-1.0-0.00.2
Area under the delay curve0.20.20.60.10.10.80.2
BMI with tail3.210.213.5-3.6-2.6-2.83.7
BMI without tail1.02.03.9-1.4-0.6-1.32.0
Body weight2.912.316.3-3.6-2.6-3.74.0
Weight adjusted by age4.24.86.3-2.5-1.5-2.22.4
Bone surface0.71.32.4-1.3-1.5-0.40.9
Bone volume0.61.02.6-0.9-1.6-0.30.4
Breakpoint value in progressive ratio session1.61.83.1-1.4-0.6-1.71.3
Number of licking bursts0.10.20.2-0.3-0.5-0.50.3
Context. condit. distance diff. score0.10.10.1-0.2-0.0-0.30.3
Locomotion velocity, session 10.00.10.2-0.10.40.10.1
Locomotion distance, session 10.70.91.4-1.0-0.3-1.21.0
Locomotion velocity, session 22.42.93.9-2.0-1.3-1.51.9
Locomotion distance, session 20.71.02.2-0.80.3-1.51.0
Locomotion velocity, session 31.51.82.4-1.5-1.5-0.81.4
Locomotion distance, session 30.10.20.40.4-0.10.6-0.3
Stereotopy head waving bouts, day 30.10.10.3-0.5-0.00.00.5
Stereotopy head waving duration, day 30.20.20.6-0.5-0.0-0.20.8
Locomotion velocity, session 70.00.00.1-0.1-0.10.40.1
Locomotion distance, session 70.10.20.30.30.60.40.0
Stereotopy head waving bouts, day 70.40.40.6-0.8-0.6-0.50.7
Stereotopy head waving duration, day 71.21.41.8-1.3-1.1-1.01.3
Locomotion velocity, session 80.50.61.60.71.3-0.3-0.3
Locomotion distance, session 80.10.20.4-0.40.0-0.60.5
Degree of sensitization distance0.60.61.0-1.0-0.2-0.71.0
Degree of sensitization stereotypy1.21.41.7-1.3-1.2-1.11.1
Conditioned locomotion0.30.30.9-0.6-0.0-0.00.9
Cocaine response after cond. corrected0.20.20.50.20.7-0.20.2
Cocaine response after cond. not corrected0.00.00.0-0.00.20.0-0.1
Cocaine response before conditioning0.60.71.9-0.7-1.40.2-0.5
Saline control response1.11.42.5-1.1-0.5-1.61.3
Bone: connectivity density0.71.11.7-1.3-1.3-0.31.1
Bone: cortical apparent density0.10.20.2-0.5-0.4-0.40.3
Bone: cortical area0.30.41.0-0.7-1.0-0.50.1
Bone: cortical porosity0.10.10.40.30.60.00.0
Bone: cortical porosity0.20.20.50.20.7-0.20.3
Bone: cortical thickness0.40.71.7-0.8-0.1-1.30.7
Bone: cortical thickness0.00.10.20.1-0.20.4-0.1
Bone: cortical tissue density0.20.20.3-0.5-0.4-0.50.4
Condit. Reinf. active minus inactive responses1.01.21.7-1.3-0.9-1.20.9
Condit. Reinf. active-inactive response ratio0.30.40.7-0.7-0.0-0.90.5
Condit. Reinf. active responses1.72.13.3-1.8-1.6-1.21.1
Condit. Reinf. inactive responses0.70.91.9-1.0-1.4-0.40.5
Incentive salience index mean0.91.11.9-1.4-1.2-0.70.8
Condit. Reinf. lever presses0.40.61.3-0.9-1.20.30.3
Condit. Reinf. active minus inactive responses0.10.20.4-0.2-0.60.3-0.3
Condit. Reinf. active-inactive response ratio0.80.91.7-1.0-1.3-0.50.7
Condit. Reinf. active responses0.10.20.4-0.3-0.60.2-0.2
Condit. Reinf. inactive responses0.60.81.50.90.40.9-1.2
Condit. Reinf. lever presses1.82.53.9-1.7-2.0-1.31.1
Condit. Reinf. lever reinforcers received0.20.40.8-0.7-0.9-0.30.2
Conditioned reinforcement - actives1.01.01.70.80.31.3-1.2
Conditioned reinforcement - inactives0.30.30.6-0.1-0.80.7-0.5
Conditioned locomotion0.60.81.70.6-0.21.3-1.0
Patch foraging indifference point 0 sec0.10.20.4-0.6-0.2-0.50.6
Patch foraging indifference point AUC1.11.31.9-1.4-1.1-1.10.9
Delay disc. indifference point, 0s delay0.20.20.5-0.2-0.30.30.7
Delay disc. indifference point, 16s delay0.20.20.5-0.4-0.70.10.3
Delay disc. indifference point, 2s delay0.20.20.60.2-0.10.8-0.3
Delay disc. indifference point, 24s delay0.10.10.20.20.20.4-0.0
Delay disc. indifference point, 4s delay0.10.10.30.10.20.30.5
Delay disc. indifference point, 8s delay1.01.01.51.11.21.2-0.3
Indifference point function ln k0.71.01.41.20.71.1-0.9
Indifference point function log k0.71.01.41.20.71.1-0.9
Patch foraging total patch changes 0 sec0.10.10.2-0.30.0-0.30.4
Patch foraging total patch changes 12 sec3.03.94.9-2.2-1.2-2.12.2
Patch foraging total patch changes 18 sec0.10.10.3-0.30.2-0.50.2
Patch foraging total patch changes 24 sec4.85.97.7-2.8-1.8-2.32.8
Patch foraging total patch changes 6 sec0.40.50.8-0.9-0.7-0.60.8
Patch foraging time to switch 0 sec0.50.81.2-1.1-1.0-0.30.9
Patch foraging water rate 0 sec0.71.21.91.30.80.7-1.4
Patch foraging water rate 12 sec1.01.62.61.61.40.5-1.3
Patch foraging water rate 18 sec0.81.11.61.30.71.1-1.0
Patch foraging water rate 24 sec0.81.21.91.41.10.7-1.1
Patch foraging water rate 6 sec1.11.62.61.61.40.7-1.2
Seeking ratio, delayed vs. immediate footshock0.30.30.4-0.5-0.7-0.60.5
Distance traveled before self-admin2.02.22.8-1.5-1.4-1.71.3
Distance traveled after self-admin0.30.40.9-0.5-0.9-0.50.3
Extensor digitorum longus weight5.521.627.1-4.9-3.4-4.85.2
Bone: elastic displacement1.82.03.51.51.91.0-1.2
Bone: elastic work0.30.40.80.10.9-0.80.3
Bone: endosteal estimation0.20.40.70.1-0.90.8-0.6
Bone: endosteal perimeter0.51.02.00.1-1.41.2-0.7
Epididymis fat weight0.10.20.6-0.0-0.8-0.1-0.1
Delta time in closed arm before/after self-admin2.62.65.1-1.20.3-2.31.9
Delta time in open arm before/after self-admin1.51.42.4-1.5-1.4-0.51.0
Diff in mean of infusions in LGA sessions1.11.21.7-1.3-0.4-1.31.1
Delay discount exponential model param0.20.20.7-0.2-0.1-0.8-0.1
Extinction: sum of active levers before priming1.81.82.7-1.6-0.6-1.41.6
Active lever presses in extinction session 61.00.91.5-1.2-0.5-1.10.9
Bone: final force1.01.62.1-1.5-1.3-1.21.1
Bone: final moment0.91.41.9-1.4-1.2-1.11.0
Food consumed during 24 hour testing period0.50.61.00.80.30.7-1.0
Glucose1.32.02.41.51.21.4-1.5
Heart weight0.30.40.70.90.60.8-0.2
Delay discount hyperbolic model param0.20.20.6-0.2-0.0-0.8-0.1
Intermittent access intake day 1-15 change1.11.12.51.10.50.8-1.6
Intermittent access intake escalation0.50.51.40.70.30.4-1.2
Intermittent access intake escalation 20.10.10.2-0.0-0.2-0.2-0.5
Intermitt. access day 1 inactive lever presses0.30.30.70.0-0.80.8-0.3
Intermitt. access day 15 inactive lever presses1.61.74.4-1.3-2.1-0.50.7
Intermitt. access escalation Index0.50.41.10.70.31.0-0.4
Intermittent access day 1 total infusions0.50.61.8-0.6-1.40.40.4
Intermittent access day 15 total infusions1.11.22.00.8-0.41.4-1.4
Intermittent access terminal intake (last 3 days)0.40.51.5-0.5-1.20.2-0.2
Intermittent access total infusions0.40.41.2-0.3-1.10.6-0.2
Intermittent access day 1 locomotion1.01.12.4-1.0-1.60.10.9
Intermittent access day 15 total locomotion1.31.43.2-1.3-1.8-0.30.8
Intermittent access total locomotion2.22.56.4-1.7-2.5-0.20.9
Intermittent access standard deviation0.20.20.50.40.5-0.1-0.7
Left kidney weight0.20.51.3-0.5-1.1-0.00.6
Right kidney weight0.20.61.2-0.8-1.1-0.40.7
Cocaine induced anxiety0.40.50.7-0.8-0.6-0.70.6
Post-drug Anxiety0.91.01.4-1.2-0.7-1.10.9
Baseline Anxiety0.60.71.0-0.9-0.2-1.01.0
Tail length0.30.82.1-0.30.2-1.41.0
Length with tail1.55.57.7-2.1-1.8-2.82.5
Length without tail1.53.43.8-1.9-1.8-2.01.7
Times rat made contact with spout0.10.10.20.20.4-0.30.0
Lifetime Intake0.20.20.6-0.2-0.80.6-0.0
Liver weight, left1.01.62.11.41.30.9-1.3
Liver weight, right0.10.20.30.30.5-0.4-0.5
Locomotor activity1.62.54.21.72.00.8-1.5
Locomotor testing distance1.42.44.11.62.01.0-1.4
Locomotor testing rearing1.01.52.01.21.40.8-1.4
Locomotion in novel chamber0.81.01.90.9-0.01.0-1.4
Locomotion in novel chamber post-restriction1.51.82.41.61.41.1-1.2
Fecal boli incidents, locomotor time 11.01.02.1-1.1-1.4-1.00.1
Change in fecal boli incidents, locomotor task2.01.92.81.71.61.2-0.7
Time >=10cm from walls, locomotor time 10.50.51.1-0.2-1.01.0-0.4
Bouts of movement, locomotor time 11.61.74.2-1.2-0.8-2.10.7
Total resting periods, locomotor time 11.41.63.2-1.2-1.1-1.80.6
Rest time, locomotor task time 10.10.10.30.4-0.20.1-0.6
Distance moved, locomotor task time 10.10.20.30.00.50.60.3
Vertical activity count, locomotor time 13.33.45.41.81.82.3-1.3
Time >=10cm from walls, locomotor time 20.30.30.50.3-0.30.7-0.6
Bouts of movement, locomotor time 24.75.06.3-2.5-1.7-2.52.2
Total resting periods, locomotor time 24.34.65.9-2.4-1.7-2.32.1
Rest time, locomotor task time 20.20.30.40.60.50.3-0.6
Distance moved, locomotor task time 20.30.30.60.50.50.8-0.4
Vertical activity count, locomotor time 23.84.16.82.12.61.8-1.4
Light reinforcement 10.30.51.10.5-0.10.8-1.0
Light reinforcement 20.81.13.0-0.2-1.71.0-0.6
Bone: marrow area0.20.40.80.2-0.70.9-0.7
Bone: maximum diameter0.40.82.2-0.9-1.5-0.40.3
Bone: maximum force2.13.75.6-2.2-2.4-1.31.6
Bone: maximum moment1.93.24.8-2.0-2.2-1.31.5
Mean time between licks in bursts0.30.41.1-0.50.6-0.11.0
Mean num. licks in bursts0.40.51.10.71.10.4-0.5
Cd content in liver1.61.82.51.41.11.2-1.6
Co content in liver3.23.74.82.22.11.5-1.9
Cu content in liver0.10.10.20.00.3-0.40.5
Fe content in liver0.20.20.4-0.4-0.4-0.60.5
K content in liver1.01.01.8-1.2-1.3-0.20.8
Mg content in liver0.40.50.8-0.9-0.8-0.40.5
Mn content in liver0.80.91.3-1.2-1.0-0.31.2
Na content in liver0.20.20.3-0.6-0.50.10.1
Rb content in liver0.60.71.21.00.70.6-1.1
Se content in liver1.21.52.5-1.3-1.6-0.61.2
Sr content in liver4.34.06.5-1.9-0.4-2.52.4
Zn content in liver3.23.65.3-2.3-1.7-1.61.8
Bone: minimum diameter0.30.61.4-0.2-1.20.7-0.6
Time in familiar zone, hab. session 10.40.40.8-0.5-0.7-0.90.1
Time in novel zone, hab. session 11.71.62.21.31.21.5-1.1
Total zone transitions, hab. session 10.10.10.2-0.10.4-0.50.3
Total locomotion distance, hab. session 10.30.40.5-0.6-0.7-0.50.6
Locomotion velocity, hab. session 10.50.70.9-0.9-0.5-1.00.9
Time in familiar zone, hab. session 20.91.01.51.10.80.7-1.2
Time in novel zone, hab. session 20.60.60.9-0.9-0.5-0.50.9
Total zone transitions, hab. session 20.20.30.6-0.6-0.1-0.80.5
Total locomotion distance, hab. session 20.20.30.4-0.6-0.5-0.70.4
Locomotion velocity, hab. session 20.20.20.4-0.6-0.5-0.50.3
Novel to familiar place preference ratio1.31.42.3-1.2-0.9-0.91.5
Novelty place preference1.01.01.8-1.0-0.8-0.81.4
Time in novel zone, NPP test1.51.52.6-1.2-0.9-1.11.6
Total zone transitions, NPP test0.30.51.0-0.50.3-1.00.7
Total locomotion distance, NPP test0.00.10.10.00.4-0.30.1
Locomotion velocity, NPP test0.10.20.40.40.60.3-0.3
Intraocular pressure0.00.00.00.0-0.20.00.0
Delta distance traveled before/after self-admin0.90.91.21.01.01.1-0.7
Delta ambulatory time before/after self-admin1.21.31.61.21.11.2-0.9
Parametrial fat weight0.30.71.60.3-1.30.9-0.5
Pavlov. Cond. lever latency0.30.30.60.80.8-0.1-0.2
Pavlov. Cond. magazine entry latency1.11.52.5-1.6-1.6-0.50.8
Pavlov. Cond. change in total contacts0.30.30.7-0.7-0.80.2-0.0
Pavlov. Cond. index score0.20.30.6-0.8-0.8-0.10.1
Pavlov. Cond. latency score0.10.20.4-0.5-0.60.1-0.1
Pavlov. Cond. lever contacts0.20.20.4-0.2-0.40.6-0.3
Pavlov. Cond. magazine entry number0.50.61.21.01.10.3-0.4
Pavlov. Cond. intertrial magazine entries0.30.30.50.50.6-0.4-0.7
Pavlov. Cond. lever-magazine prob. diff.0.30.40.8-0.9-0.8-0.20.2
Pavlov. Cond. response bias0.60.71.4-1.1-1.2-0.00.4
Pavlov. Cond. lever latency2.33.15.32.02.31.2-1.3
Pavlov. Cond. magazine entry latency7.18.210.7-3.3-3.0-2.62.5
Pavlov. Cond. change in total contacts3.75.18.4-2.6-2.9-1.81.4
Pavlov. Cond. index score7.09.012.3-3.3-3.5-2.72.4
Pavlov. Cond. latency score7.08.712.0-3.3-3.5-2.62.3
Pavlov. Cond. lever contacts2.12.93.8-1.9-1.9-1.71.2
Pavlov. Cond. magazine entry number11.614.217.34.23.83.6-3.5
Pavlov. Cond. intertrial magazine entries2.53.23.92.01.91.3-1.9
Pavlov. Cond. lever-magazine prob. diff.7.49.412.4-3.4-3.5-2.82.4
Pavlov. Cond. response bias3.85.26.9-2.6-2.6-2.01.8
Time in closed arm before self-admin0.30.31.0-0.2-1.00.3-0.3
Time in closed arm after self-admin0.10.10.20.40.3-0.5-0.2
Time in open arm before self-admin3.63.97.62.22.71.2-1.2
Time in open arm after self-admin0.70.71.50.71.20.8-0.4
Bone: periosteal estimation0.30.62.0-0.6-1.4-0.0-0.1
Bone: periosteal perimeter0.20.31.0-0.4-1.0-0.2-0.2
Bone: post-yield work1.01.44.5-0.8-2.10.6-0.0
Progressive ratio test 1 active lever presses0.90.91.80.90.31.4-1.1
Progressive ratio test 1 breakpoint1.11.11.91.00.51.4-1.2
Progressive ratio test 1 inactive lever presses0.91.01.4-1.2-0.9-0.61.1
Progressive ratio test 2 active lever presses0.60.61.30.4-0.41.1-0.9
Progressive ratio test 2 breakpoint1.11.32.30.9-0.21.5-1.4
Progressive ratio test 2 inactive lever presses0.50.61.8-0.6-1.30.3-0.0
Incentive Sensitization - Responses0.30.31.0-0.5-1.00.10.2
Incentive Sensitization - Breakpoint0.40.41.3-0.5-1.10.20.1
Sum of active levers in priming session hrs 5-60.30.30.6-0.8-0.4-0.50.3
Progressive ratio0.20.20.5-0.3-0.70.10.3
Food seeking constrained by brief footshock0.30.40.70.70.50.8-0.3
Seeking ratio, punishment vs. effort0.30.41.10.61.00.2-0.3
Retroperitoneal fat weight0.92.84.32.10.81.7-1.9
Reaction time number correct0.50.72.7-0.00.1-1.60.3
Reaction time mean minus median0.30.50.9-0.8-0.4-0.90.5
Reaction time mean minus median AUC0.20.31.0-0.20.1-1.00.0
Reaction time num false alarms0.81.12.41.31.60.3-0.7
Reaction time num false alarms AUC0.81.12.91.21.70.2-0.4
Reaction time trials correct on left0.50.72.7-0.00.1-1.60.3
Reaction time trials on left0.50.72.80.00.2-1.70.3
Reaction time mean0.10.20.3-0.6-0.4-0.4-0.1
Reaction time mean AUC0.10.10.2-0.4-0.4-0.3-0.3
Median of all reaction times0.30.40.7-0.8-0.8-0.50.2
Reaction time omissions0.30.30.60.40.8-0.7-0.2
Reaction time false alarm rate0.71.01.61.01.31.0-0.5
Reaction time premature initiation rate2.22.94.1-2.0-1.8-0.72.0
Reaction time premature initiations2.33.24.1-1.9-1.4-1.82.0
Std. dev. reaction times0.10.10.20.10.4-0.5-0.4
Reaction time trials completed0.50.72.80.00.2-1.70.3
Reaction time trials AUC0.50.72.70.10.3-1.60.2
Run reversals in cocaine runway, females0.40.40.7-0.7-0.4-0.40.8
Run reversals in cocaine runway, males3.13.03.91.71.52.0-1.7
Latency to leave start box in cocaine runway0.40.40.70.3-0.80.8-0.3
Latency to leave start box in cocaine runway, F0.30.30.9-0.3-1.00.10.2
Latency to leave start box in cocaine runway, M2.22.23.51.50.31.9-1.6
Std. dev. time between licks in bursts0.60.71.20.80.81.1-0.6
Total sessions with >9 infusions0.20.20.70.2-0.10.8-0.1
Short access day 1 total inactive lever presses0.20.20.60.40.00.8-0.4
Short access day 10 total inactive lever presses1.61.82.81.41.11.7-1.1
Short access day 1 total infusions0.10.10.30.30.20.5-0.1
Short access day 10 total infusions0.70.81.8-0.9-1.30.30.7
Short access total infusions0.10.10.2-0.4-0.50.20.4
Short access day 1 locomotion0.80.81.1-1.0-1.0-0.41.0
Short access day 10 total locomotion1.51.73.0-1.5-1.7-0.51.2
Short access total locomotion2.32.43.4-1.8-1.8-0.71.6
One hour access (0.3 mA shock)1.11.22.01.0-0.21.4-1.4
Compulsive drug intake0.60.61.60.11.3-0.80.5
One hour access (shock baseline)2.02.33.81.2-0.41.9-1.9
Social response proportion0.20.20.40.60.10.4-0.6
Social responses0.60.81.31.10.90.5-1.0
Social time0.60.82.00.91.40.2-0.5
Soleus weight1.95.58.22.41.32.5-2.9
Bone: stiffness0.81.33.3-1.1-1.8-0.50.6
Tibialis anterior weight6.020.728.1-4.6-2.5-5.35.2
Time to tail flick, vehicle, before self-admin1.41.42.0-1.3-1.4-0.51.2
Time to tail flick, vehicle, after self-admin1.11.21.9-1.0-0.6-1.41.3
Time to tail flick, test, before self-admin0.20.20.4-0.3-0.1-0.50.6
Time to tail flick, test, after self-admin0.60.60.80.80.70.9-0.7
Delta time to tail flick, vehicle, before/after SA0.10.10.40.20.3-0.6-0.0
Delta time to tail flick, test, before/after SA0.20.20.40.20.30.6-0.5
Tibia length1.44.04.7-2.1-2.2-2.01.7
Ambulatory time before self-admin1.51.62.0-1.4-1.4-1.20.9
Ambulatory time after self-admin0.70.82.4-0.8-1.5-0.30.3
Bone: tissue strength0.70.71.50.70.31.2-0.9
Total heroin consumption1.41.62.7-1.20.2-1.61.5
Bone: trabecular number0.71.12.1-1.1-1.5-0.30.9
Bone: trabecular spacing0.50.71.40.91.20.2-0.8
Bone: trabecular thickness0.20.20.50.3-0.60.1-0.7
Bone: trabecular tissue density2.53.54.92.01.71.5-2.2
Water consumed over 24 hours0.10.10.4-0.1-0.2-0.60.3
Number of responses in last shaping day0.10.10.30.00.5-0.10.2