Tmem150b

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Tmem150b 0.06 0.04 5.4e-07 0.04 0.04 0.03 0.04 2.2e-05 1.8e-05 1.2e-04 1.3e-05
2 Adipose alternative TSS XM_039111106.2 0.03 0.02 3.6e-03 0.01 0.02 0.01 0.01 1.6e-02 3.9e-03 1.8e-02 1.7e-02
3 pVTA alternative TSS NM_001107476.1 0.05 0.04 7.4e-03 0 0.01 -0 0 1.1e-01 8.7e-02 7.8e-01 2.6e-01
4 Brain mRNA stability Tmem150b 0.06 0.06 3.7e-03 0.02 0.02 0.01 0.02 2.8e-03 3.3e-03 2.4e-02 6.8e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.10.10.20.30.3-0.4-0.4
Area under the delay curve0.20.40.4-0.6-0.60.60.5
BMI with tail0.51.92.2-1.4-1.31.41.5
BMI without tail0.00.20.30.50.6-0.30.0
Body weight1.15.06.52.42.6-2.2-1.6
Weight adjusted by age0.30.91.50.80.7-1.0-1.2
Bone surface2.95.66.32.52.5-2.4-2.1
Bone volume2.24.44.82.12.2-2.1-1.9
Breakpoint value in progressive ratio session0.30.50.5-0.7-0.70.70.6
Number of licking bursts0.00.10.1-0.3-0.30.30.2
Context. condit. distance diff. score0.10.10.3-0.4-0.50.30.1
Locomotion velocity, session 10.40.51.0-0.4-0.9-0.1-1.0
Locomotion distance, session 12.22.85.01.51.1-1.7-2.2
Locomotion velocity, session 20.20.20.5-0.5-0.70.2-0.4
Locomotion distance, session 21.82.53.31.51.3-1.6-1.8
Locomotion velocity, session 30.00.10.1-0.3-0.30.20.0
Locomotion distance, session 30.20.20.60.30.1-0.4-0.8
Stereotopy head waving bouts, day 30.10.10.2-0.3-0.30.40.4
Stereotopy head waving duration, day 30.10.10.2-0.3-0.20.40.5
Locomotion velocity, session 70.00.10.20.1-0.0-0.2-0.4
Locomotion distance, session 70.00.10.2-0.1-0.3-0.1-0.4
Stereotopy head waving bouts, day 70.10.20.30.50.5-0.4-0.2
Stereotopy head waving duration, day 70.10.20.30.40.5-0.4-0.2
Locomotion velocity, session 80.10.10.2-0.2-0.50.0-0.4
Locomotion distance, session 80.10.20.50.30.0-0.5-0.7
Degree of sensitization distance0.00.00.00.0-0.0-0.0-0.0
Degree of sensitization stereotypy0.00.00.10.20.3-0.10.1
Conditioned locomotion0.10.10.20.0-0.1-0.2-0.5
Cocaine response after cond. corrected1.32.03.5-1.2-0.91.51.9
Cocaine response after cond. not corrected0.10.10.30.30.6-0.20.3
Cocaine response before conditioning7.69.19.73.12.8-3.1-3.1
Saline control response0.10.20.6-0.2-0.3-0.2-0.8
Bone: connectivity density0.00.00.1-0.3-0.20.20.2
Bone: cortical apparent density0.10.10.40.0-0.1-0.2-0.6
Bone: cortical area0.81.31.41.21.2-1.2-1.0
Bone: cortical porosity0.60.60.9-0.8-0.60.80.9
Bone: cortical porosity0.20.20.5-0.3-0.10.40.7
Bone: cortical thickness0.30.60.8-0.8-0.90.70.5
Bone: cortical thickness0.10.10.30.20.2-0.4-0.6
Bone: cortical tissue density0.10.10.3-0.0-0.1-0.2-0.6
Condit. Reinf. active minus inactive responses0.20.20.3-0.5-0.40.50.5
Condit. Reinf. active-inactive response ratio1.81.92.0-1.4-1.31.41.4
Condit. Reinf. active responses0.10.10.10.30.3-0.3-0.3
Condit. Reinf. inactive responses3.04.04.22.01.8-2.1-2.0
Incentive salience index mean0.00.10.10.20.3-0.3-0.2
Condit. Reinf. lever presses0.71.11.21.01.0-1.1-1.0
Condit. Reinf. active minus inactive responses3.35.15.52.32.2-2.3-2.2
Condit. Reinf. active-inactive response ratio4.36.87.82.82.8-2.7-2.2
Condit. Reinf. active responses3.04.45.02.11.9-2.2-2.2
Condit. Reinf. inactive responses0.00.00.10.0-0.2-0.1-0.4
Condit. Reinf. lever presses0.60.81.41.11.2-0.8-0.3
Condit. Reinf. lever reinforcers received4.05.66.42.42.1-2.5-2.5
Conditioned reinforcement - actives0.10.30.50.60.7-0.5-0.2
Conditioned reinforcement - inactives1.23.43.71.91.8-1.9-1.8
Conditioned locomotion0.10.10.20.40.5-0.3-0.1
Patch foraging indifference point 0 sec0.20.61.0-0.9-1.00.70.4
Patch foraging indifference point AUC0.30.80.9-0.9-0.90.90.8
Delay disc. indifference point, 0s delay0.10.10.3-0.3-0.4-0.1-0.6
Delay disc. indifference point, 16s delay0.60.92.0-0.6-0.51.01.4
Delay disc. indifference point, 2s delay0.50.50.8-0.9-0.90.70.3
Delay disc. indifference point, 24s delay0.50.81.3-0.7-0.70.91.1
Delay disc. indifference point, 4s delay0.10.10.10.30.3-0.2-0.2
Delay disc. indifference point, 8s delay0.10.10.1-0.3-0.40.30.1
Indifference point function ln k2.68.09.02.82.6-2.9-3.0
Indifference point function log k2.68.09.02.82.6-2.9-3.0
Patch foraging total patch changes 0 sec0.20.61.0-0.9-1.00.70.3
Patch foraging total patch changes 12 sec0.30.30.4-0.5-0.50.60.7
Patch foraging total patch changes 18 sec0.40.81.0-1.0-1.00.90.7
Patch foraging total patch changes 24 sec0.00.10.20.20.30.00.4
Patch foraging total patch changes 6 sec0.81.41.5-1.2-1.21.21.1
Patch foraging time to switch 0 sec1.14.39.1-1.5-1.12.13.0
Patch foraging water rate 0 sec0.31.02.20.70.5-1.0-1.5
Patch foraging water rate 12 sec0.93.66.61.61.2-1.9-2.6
Patch foraging water rate 18 sec0.61.42.80.90.7-1.2-1.7
Patch foraging water rate 24 sec0.91.22.01.00.8-1.2-1.4
Patch foraging water rate 6 sec5.98.79.33.13.0-3.0-2.8
Seeking ratio, delayed vs. immediate footshock0.20.30.9-0.1-0.3-0.3-0.9
Distance traveled before self-admin1.32.86.61.10.8-1.7-2.6
Distance traveled after self-admin0.30.51.1-0.8-1.00.4-0.4
Extensor digitorum longus weight0.20.91.41.11.2-0.9-0.5
Bone: elastic displacement0.30.40.7-0.7-0.90.60.3
Bone: elastic work0.50.60.90.70.6-0.8-1.0
Bone: endosteal estimation2.86.88.12.82.9-2.6-2.1
Bone: endosteal perimeter1.74.24.72.22.2-2.1-1.7
Epididymis fat weight0.10.30.90.20.50.20.9
Delta time in closed arm before/after self-admin0.10.10.1-0.2-0.30.30.2
Delta time in open arm before/after self-admin1.41.72.31.21.1-1.4-1.5
Diff in mean of infusions in LGA sessions0.10.20.6-0.0-0.2-0.2-0.8
Delay discount exponential model param0.20.20.30.50.5-0.5-0.4
Extinction: sum of active levers before priming0.10.10.2-0.3-0.40.20.1
Active lever presses in extinction session 60.30.31.0-0.10.20.31.0
Bone: final force2.43.94.12.02.0-2.0-1.8
Bone: final moment3.04.85.12.22.2-2.3-2.1
Food consumed during 24 hour testing period1.22.52.71.61.6-1.6-1.5
Glucose1.72.73.6-1.8-1.91.61.2
Heart weight1.42.23.01.61.7-1.4-1.0
Delay discount hyperbolic model param0.20.30.40.60.6-0.6-0.4
Intermittent access intake day 1-15 change0.21.01.21.11.1-1.0-0.9
Intermittent access intake escalation0.31.72.01.41.4-1.3-1.0
Intermittent access intake escalation 20.10.20.50.30.2-0.5-0.7
Intermitt. access day 1 inactive lever presses0.22.12.81.61.7-1.4-0.9
Intermitt. access day 15 inactive lever presses0.73.64.82.12.2-1.9-1.2
Intermitt. access escalation Index0.20.50.6-0.7-0.70.70.7
Intermittent access day 1 total infusions0.20.60.90.90.9-0.8-0.5
Intermittent access day 15 total infusions0.61.42.01.31.4-1.1-0.7
Intermittent access terminal intake (last 3 days)0.71.21.61.21.3-1.1-0.8
Intermittent access total infusions1.51.82.31.51.5-1.3-0.9
Intermittent access day 1 locomotion0.81.51.81.31.3-1.2-1.0
Intermittent access day 15 total locomotion0.52.13.01.31.2-1.5-1.7
Intermittent access total locomotion3.34.04.22.02.0-2.0-1.9
Intermittent access standard deviation0.00.20.3-0.5-0.50.50.3
Left kidney weight3.225.528.15.35.3-5.1-4.5
Right kidney weight3.625.029.15.45.4-5.0-4.1
Cocaine induced anxiety0.41.21.31.11.1-1.1-1.0
Post-drug Anxiety0.50.50.90.90.9-0.7-0.3
Baseline Anxiety0.40.70.9-0.8-0.80.91.0
Tail length2.513.214.73.83.8-3.7-3.2
Length with tail3.113.716.74.04.1-3.7-3.0
Length without tail0.94.77.22.42.7-2.0-1.2
Times rat made contact with spout0.10.10.2-0.2-0.10.30.5
Lifetime Intake1.01.21.61.21.3-1.1-0.7
Liver weight, left1.11.82.11.41.4-1.3-1.2
Liver weight, right0.00.00.00.10.1-0.1-0.0
Locomotor activity0.10.10.3-0.2-0.20.40.6
Locomotor testing distance0.00.10.20.30.4-0.00.4
Locomotor testing rearing0.20.71.01.01.0-0.8-0.6
Locomotion in novel chamber1.31.72.3-1.5-1.41.30.9
Locomotion in novel chamber post-restriction0.30.91.2-0.9-0.81.01.1
Fecal boli incidents, locomotor time 10.10.40.50.60.5-0.6-0.7
Change in fecal boli incidents, locomotor task2.93.13.5-1.9-1.91.71.5
Time >=10cm from walls, locomotor time 10.00.10.2-0.1-0.10.20.4
Bouts of movement, locomotor time 10.40.61.60.30.1-0.7-1.3
Total resting periods, locomotor time 10.10.10.4-0.1-0.3-0.2-0.6
Rest time, locomotor task time 11.01.61.91.41.3-1.3-1.0
Distance moved, locomotor task time 10.61.82.1-1.4-1.41.41.1
Vertical activity count, locomotor time 10.53.45.0-2.2-2.21.80.9
Time >=10cm from walls, locomotor time 20.41.01.5-0.9-0.91.01.2
Bouts of movement, locomotor time 20.00.00.00.20.1-0.1-0.0
Total resting periods, locomotor time 20.00.00.00.20.1-0.2-0.2
Rest time, locomotor task time 20.00.10.20.0-0.1-0.2-0.5
Distance moved, locomotor task time 20.10.20.2-0.5-0.50.50.4
Vertical activity count, locomotor time 20.10.20.3-0.5-0.60.40.1
Light reinforcement 10.10.30.4-0.5-0.70.1-0.6
Light reinforcement 20.92.12.9-1.7-1.61.40.9
Bone: marrow area2.86.88.22.82.9-2.6-2.1
Bone: maximum diameter1.02.02.71.61.6-1.4-1.0
Bone: maximum force3.05.96.72.62.6-2.5-2.1
Bone: maximum moment3.66.87.42.72.7-2.7-2.3
Mean time between licks in bursts0.10.71.3-1.0-1.10.80.4
Mean num. licks in bursts0.10.10.30.40.5-0.3-0.1
Cd content in liver2.32.62.71.61.5-1.6-1.6
Co content in liver0.91.02.30.70.6-1.1-1.5
Cu content in liver0.91.11.31.01.1-1.1-0.9
Fe content in liver0.30.30.40.50.6-0.6-0.5
K content in liver0.00.00.0-0.1-0.00.00.0
Mg content in liver0.10.10.4-0.2-0.10.40.6
Mn content in liver0.00.10.2-0.10.10.20.4
Na content in liver3.13.54.0-2.0-1.91.91.7
Rb content in liver2.63.03.91.92.0-1.7-1.3
Se content in liver2.32.73.6-1.6-1.41.71.9
Sr content in liver6.05.27.2-2.6-2.72.21.3
Zn content in liver0.50.61.5-0.6-0.30.81.2
Bone: minimum diameter3.46.47.12.72.6-2.6-2.3
Time in familiar zone, hab. session 13.33.65.11.71.5-2.0-2.3
Time in novel zone, hab. session 12.62.93.1-1.7-1.61.81.7
Total zone transitions, hab. session 10.81.12.80.60.2-1.0-1.7
Total locomotion distance, hab. session 10.30.41.20.2-0.1-0.5-1.1
Locomotion velocity, hab. session 10.20.30.90.2-0.1-0.4-0.9
Time in familiar zone, hab. session 23.03.34.62.02.1-1.8-1.2
Time in novel zone, hab. session 22.02.22.7-1.6-1.61.51.2
Total zone transitions, hab. session 22.22.94.31.61.3-1.7-2.1
Total locomotion distance, hab. session 20.10.10.40.0-0.2-0.2-0.6
Locomotion velocity, hab. session 20.10.10.3-0.2-0.4-0.1-0.6
Novel to familiar place preference ratio0.00.00.00.20.2-0.1-0.0
Novelty place preference0.10.10.20.40.4-0.3-0.3
Time in novel zone, NPP test0.10.20.20.40.5-0.4-0.3
Total zone transitions, NPP test0.30.40.90.60.3-0.6-1.0
Total locomotion distance, NPP test0.30.40.50.70.6-0.6-0.6
Locomotion velocity, NPP test0.30.50.70.70.5-0.7-0.8
Intraocular pressure0.00.00.1-0.3-0.30.2-0.0
Delta distance traveled before/after self-admin2.32.52.7-1.6-1.51.71.6
Delta ambulatory time before/after self-admin1.11.92.0-1.4-1.41.41.3
Parametrial fat weight1.84.24.5-2.0-2.02.12.1
Pavlov. Cond. lever latency0.10.10.2-0.4-0.40.30.2
Pavlov. Cond. magazine entry latency0.70.91.3-0.8-0.71.01.2
Pavlov. Cond. change in total contacts0.20.30.3-0.5-0.60.50.4
Pavlov. Cond. index score0.30.30.4-0.5-0.50.60.6
Pavlov. Cond. latency score0.20.20.3-0.4-0.40.50.5
Pavlov. Cond. lever contacts0.10.10.30.50.5-0.3-0.1
Pavlov. Cond. magazine entry number0.20.30.50.50.4-0.6-0.7
Pavlov. Cond. intertrial magazine entries0.20.20.4-0.4-0.60.0-0.7
Pavlov. Cond. lever-magazine prob. diff.0.30.30.4-0.6-0.50.60.6
Pavlov. Cond. response bias0.00.10.20.00.10.20.4
Pavlov. Cond. lever latency0.30.40.40.60.6-0.6-0.6
Pavlov. Cond. magazine entry latency0.71.01.2-1.0-0.91.01.1
Pavlov. Cond. change in total contacts0.10.10.30.30.2-0.4-0.5
Pavlov. Cond. index score0.00.10.1-0.2-0.20.30.3
Pavlov. Cond. latency score0.30.50.5-0.7-0.60.70.7
Pavlov. Cond. lever contacts0.10.10.1-0.3-0.30.30.3
Pavlov. Cond. magazine entry number0.40.60.60.80.7-0.8-0.8
Pavlov. Cond. intertrial magazine entries2.24.85.02.22.2-2.2-2.1
Pavlov. Cond. lever-magazine prob. diff.0.10.10.1-0.4-0.40.40.4
Pavlov. Cond. response bias0.10.10.20.40.4-0.3-0.2
Time in closed arm before self-admin0.61.01.11.01.0-1.0-1.0
Time in closed arm after self-admin0.10.10.20.40.4-0.20.0
Time in open arm before self-admin2.12.62.6-1.6-1.61.61.6
Time in open arm after self-admin0.20.20.3-0.6-0.60.30.1
Bone: periosteal estimation2.15.05.72.42.4-2.3-1.9
Bone: periosteal perimeter1.73.33.51.91.9-1.9-1.7
Bone: post-yield work2.84.86.52.42.5-2.2-1.5
Progressive ratio test 1 active lever presses0.50.91.40.80.7-1.0-1.2
Progressive ratio test 1 breakpoint0.50.91.30.80.7-1.0-1.2
Progressive ratio test 1 inactive lever presses1.53.94.22.01.9-2.1-1.9
Progressive ratio test 2 active lever presses0.50.71.10.91.0-0.8-0.3
Progressive ratio test 2 breakpoint0.60.81.31.01.1-0.8-0.4
Progressive ratio test 2 inactive lever presses1.54.75.12.32.2-2.2-2.0
Incentive Sensitization - Responses0.71.93.11.61.7-1.3-0.7
Incentive Sensitization - Breakpoint0.61.32.21.31.5-1.0-0.4
Sum of active levers in priming session hrs 5-60.00.00.1-0.2-0.30.1-0.2
Progressive ratio0.00.00.10.0-0.2-0.1-0.3
Food seeking constrained by brief footshock1.11.34.2-0.3-0.8-0.5-2.1
Seeking ratio, punishment vs. effort0.30.71.60.60.5-0.9-1.3
Retroperitoneal fat weight4.218.623.1-4.1-3.84.54.8
Reaction time number correct0.00.20.3-0.4-0.60.40.3
Reaction time mean minus median0.00.00.00.00.0-0.0-0.1
Reaction time mean minus median AUC0.00.00.0-0.10.00.10.2
Reaction time num false alarms0.00.00.0-0.10.0-0.00.1
Reaction time num false alarms AUC0.10.20.4-0.7-0.60.30.2
Reaction time trials correct on left0.00.20.3-0.4-0.60.40.3
Reaction time trials on left0.00.20.3-0.4-0.60.40.2
Reaction time mean0.40.91.41.01.2-0.9-0.6
Reaction time mean AUC0.10.30.60.60.8-0.5-0.2
Median of all reaction times0.50.81.31.01.2-0.9-0.5
Reaction time omissions0.10.10.2-0.3-0.40.1-0.3
Reaction time false alarm rate0.00.10.1-0.4-0.30.10.0
Reaction time premature initiation rate0.00.00.10.20.2-0.10.0
Reaction time premature initiations0.00.00.1-0.1-0.10.20.3
Std. dev. reaction times0.20.60.90.81.0-0.8-0.5
Reaction time trials completed0.00.20.3-0.4-0.60.40.2
Reaction time trials AUC0.00.10.2-0.3-0.40.40.3
Run reversals in cocaine runway, females0.30.30.60.60.8-0.5-0.1
Run reversals in cocaine runway, males0.00.00.00.10.1-0.10.0
Latency to leave start box in cocaine runway0.50.70.70.90.8-0.8-0.7
Latency to leave start box in cocaine runway, F0.10.10.10.30.3-0.3-0.2
Latency to leave start box in cocaine runway, M1.61.51.71.31.3-1.2-1.1
Std. dev. time between licks in bursts0.20.30.7-0.5-0.90.2-0.5
Total sessions with >9 infusions1.01.21.51.01.0-1.1-1.2
Short access day 1 total inactive lever presses0.50.91.51.11.2-0.9-0.5
Short access day 10 total inactive lever presses0.00.20.30.50.5-0.5-0.4
Short access day 1 total infusions0.00.00.00.00.0-0.1-0.1
Short access day 10 total infusions0.00.00.0-0.1-0.10.10.0
Short access total infusions0.00.00.0-0.2-0.20.20.2
Short access day 1 locomotion0.30.40.60.70.8-0.6-0.4
Short access day 10 total locomotion0.31.22.50.80.6-1.1-1.6
Short access total locomotion0.30.51.40.30.1-0.6-1.2
One hour access (0.3 mA shock)4.35.15.92.42.4-2.3-1.9
Compulsive drug intake1.62.42.71.61.6-1.6-1.4
One hour access (shock baseline)0.20.40.70.80.9-0.5-0.0
Social response proportion0.70.91.51.11.2-0.9-0.4
Social responses3.03.94.52.12.1-2.0-1.7
Social time3.04.86.42.11.8-2.3-2.5
Soleus weight0.00.10.20.40.4-0.3-0.2
Bone: stiffness2.64.75.22.22.3-2.2-1.9
Tibialis anterior weight0.82.63.9-1.4-1.31.72.0
Time to tail flick, vehicle, before self-admin0.40.50.90.60.4-0.7-1.0
Time to tail flick, vehicle, after self-admin0.20.40.70.80.8-0.6-0.2
Time to tail flick, test, before self-admin0.30.30.5-0.5-0.70.1-0.6
Time to tail flick, test, after self-admin0.30.30.6-0.4-0.40.50.8
Delta time to tail flick, vehicle, before/after SA0.10.10.4-0.10.00.30.6
Delta time to tail flick, test, before/after SA0.10.20.30.40.5-0.10.5
Tibia length3.810.512.33.53.5-3.2-2.6
Ambulatory time before self-admin0.82.35.01.10.9-1.5-2.2
Ambulatory time after self-admin0.20.41.2-0.2-0.4-0.2-1.1
Bone: tissue strength0.30.30.80.30.0-0.5-0.9
Total heroin consumption0.00.00.1-0.2-0.20.10.0
Bone: trabecular number0.10.20.3-0.5-0.50.40.2
Bone: trabecular spacing0.00.00.00.10.10.00.2
Bone: trabecular thickness0.00.00.00.00.1-0.1-0.1
Bone: trabecular tissue density0.61.11.7-0.9-0.71.11.3
Water consumed over 24 hours0.61.31.71.10.9-1.2-1.3
Number of responses in last shaping day0.00.00.10.10.20.00.3