Timp4

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Timp4 0.05 0.03 3.5e-05 0.04 0.04 0.04 0.04 8.9e-06 6.1e-05 3.6e-05 4.6e-05
2 PL isoform ratio NM_001109393.1 0.02 0.02 7.2e-03 0.01 0 -0 0 9.1e-03 1.3e-01 3.9e-01 1.3e-01
3 PL isoform ratio XM_039108336.1 0.02 0.02 9.7e-03 0.01 0 -0 0 1.2e-02 1.6e-01 4.6e-01 1.7e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.20.30.80.90.0-0.0
Area under the delay curve0.00.00.00.00.0-0.0
BMI with tail0.62.04.5-2.10.9-0.9
BMI without tail0.40.81.0-0.7-1.01.0
Body weight0.10.51.3-1.20.2-0.2
Weight adjusted by age0.20.20.20.30.5-0.5
Bone surface0.40.72.11.5-0.10.1
Bone volume0.20.30.90.9-0.30.3
Breakpoint value in progressive ratio session1.31.44.1-2.00.1-0.1
Number of licking bursts0.70.81.00.6-1.01.0
Context. condit. distance diff. score1.41.64.3-2.10.6-0.6
Locomotion velocity, session 10.30.40.50.0-0.70.7
Locomotion distance, session 11.41.72.40.6-1.61.6
Locomotion velocity, session 21.01.21.41.2-1.01.0
Locomotion distance, session 23.34.66.31.1-2.52.5
Locomotion velocity, session 30.50.51.41.20.3-0.3
Locomotion distance, session 30.50.61.61.20.3-0.3
Stereotopy head waving bouts, day 30.70.81.00.6-1.01.0
Stereotopy head waving duration, day 30.80.91.40.2-1.21.2
Locomotion velocity, session 70.40.41.31.10.0-0.0
Locomotion distance, session 70.10.10.10.10.3-0.3
Stereotopy head waving bouts, day 71.01.22.21.5-0.80.8
Stereotopy head waving duration, day 71.51.82.31.5-1.31.3
Locomotion velocity, session 80.60.81.1-0.3-1.01.0
Locomotion distance, session 81.31.82.0-1.2-1.41.4
Degree of sensitization distance0.30.30.7-0.8-0.30.3
Degree of sensitization stereotypy0.30.30.70.9-0.30.3
Conditioned locomotion1.41.72.4-0.51.6-1.6
Cocaine response after cond. corrected6.47.28.82.0-3.03.0
Cocaine response after cond. not corrected6.97.67.72.7-2.82.8
Cocaine response before conditioning0.70.91.00.91.0-1.0
Saline control response1.72.24.12.01.1-1.1
Bone: connectivity density0.20.40.70.9-0.50.5
Bone: cortical apparent density0.20.30.30.6-0.60.6
Bone: cortical area0.10.20.3-0.10.5-0.5
Bone: cortical porosity0.30.30.5-0.0-0.70.7
Bone: cortical porosity0.20.20.3-0.2-0.50.5
Bone: cortical thickness0.00.00.00.10.0-0.0
Bone: cortical thickness0.10.10.30.50.0-0.0
Bone: cortical tissue density0.30.40.40.5-0.60.6
Condit. Reinf. active minus inactive responses1.61.85.32.30.2-0.2
Condit. Reinf. active-inactive response ratio2.12.26.62.6-0.20.2
Condit. Reinf. active responses0.80.91.71.30.7-0.7
Condit. Reinf. inactive responses0.40.50.5-0.70.7-0.7
Incentive salience index mean1.72.05.32.3-0.60.6
Condit. Reinf. lever presses1.52.02.11.3-1.51.5
Condit. Reinf. active minus inactive responses1.01.22.01.4-0.90.9
Condit. Reinf. active-inactive response ratio1.41.52.10.5-1.41.4
Condit. Reinf. active responses0.40.51.51.2-0.10.1
Condit. Reinf. inactive responses1.41.72.20.81.5-1.5
Condit. Reinf. lever presses0.60.80.80.9-0.90.9
Condit. Reinf. lever reinforcers received0.71.02.81.7-0.30.3
Conditioned reinforcement - actives2.32.32.5-1.41.6-1.6
Conditioned reinforcement - inactives0.20.20.60.80.2-0.2
Conditioned locomotion0.00.10.2-0.40.0-0.0
Patch foraging indifference point 0 sec0.10.10.1-0.30.3-0.3
Patch foraging indifference point AUC0.40.40.70.8-0.50.5
Delay disc. indifference point, 0s delay0.80.91.2-0.41.1-1.1
Delay disc. indifference point, 16s delay0.10.10.2-0.1-0.50.5
Delay disc. indifference point, 2s delay0.70.80.8-0.90.9-0.9
Delay disc. indifference point, 24s delay1.11.01.30.8-1.11.1
Delay disc. indifference point, 4s delay0.10.10.1-0.10.3-0.3
Delay disc. indifference point, 8s delay0.20.20.30.6-0.30.3
Indifference point function ln k0.50.71.9-1.40.2-0.2
Indifference point function log k0.50.71.9-1.40.2-0.2
Patch foraging total patch changes 0 sec0.10.20.5-0.70.3-0.3
Patch foraging total patch changes 12 sec0.30.40.50.5-0.70.7
Patch foraging total patch changes 18 sec0.20.30.50.70.5-0.5
Patch foraging total patch changes 24 sec1.11.42.0-0.41.4-1.4
Patch foraging total patch changes 6 sec0.30.51.1-1.00.4-0.4
Patch foraging time to switch 0 sec0.20.30.3-0.40.6-0.6
Patch foraging water rate 0 sec0.50.91.30.2-1.11.1
Patch foraging water rate 12 sec0.20.30.3-0.5-0.50.5
Patch foraging water rate 18 sec0.20.30.4-0.60.5-0.5
Patch foraging water rate 24 sec0.40.60.90.0-0.90.9
Patch foraging water rate 6 sec1.11.52.30.2-1.51.5
Seeking ratio, delayed vs. immediate footshock1.71.92.2-1.51.3-1.3
Distance traveled before self-admin1.51.62.81.7-1.01.0
Distance traveled after self-admin0.30.30.60.8-0.40.4
Extensor digitorum longus weight3.714.632.9-5.72.3-2.3
Bone: elastic displacement1.61.82.60.11.6-1.6
Bone: elastic work0.20.20.3-0.30.5-0.5
Bone: endosteal estimation0.10.20.2-0.50.4-0.4
Bone: endosteal perimeter0.20.50.60.50.8-0.8
Epididymis fat weight0.10.30.60.80.4-0.4
Delta time in closed arm before/after self-admin0.10.10.1-0.10.4-0.4
Delta time in open arm before/after self-admin0.20.20.4-0.60.2-0.2
Diff in mean of infusions in LGA sessions0.40.40.6-0.20.8-0.8
Delay discount exponential model param0.00.00.0-0.10.1-0.1
Extinction: sum of active levers before priming0.10.10.10.20.4-0.4
Active lever presses in extinction session 61.51.54.3-2.10.3-0.3
Bone: final force0.30.40.9-1.00.4-0.4
Bone: final moment0.40.61.0-1.00.7-0.7
Food consumed during 24 hour testing period0.10.20.20.20.5-0.5
Glucose1.42.12.2-1.51.4-1.4
Heart weight0.81.22.2-1.50.8-0.8
Delay discount hyperbolic model param0.00.00.00.1-0.00.0
Intermittent access intake day 1-15 change1.81.83.2-1.81.0-1.0
Intermittent access intake escalation1.81.72.3-1.51.2-1.2
Intermittent access intake escalation 21.71.74.1-2.00.7-0.7
Intermitt. access day 1 inactive lever presses0.50.60.91.0-0.60.6
Intermitt. access day 15 inactive lever presses0.30.30.91.0-0.10.1
Intermitt. access escalation Index0.00.00.0-0.2-0.10.1
Intermittent access day 1 total infusions0.00.10.1-0.20.2-0.2
Intermittent access day 15 total infusions2.52.83.1-1.81.6-1.6
Intermittent access terminal intake (last 3 days)2.52.84.9-2.21.3-1.3
Intermittent access total infusions1.21.31.4-1.11.2-1.2
Intermittent access day 1 locomotion0.50.61.3-1.10.5-0.5
Intermittent access day 15 total locomotion1.92.14.6-2.10.9-0.9
Intermittent access total locomotion1.31.52.9-1.70.9-0.9
Intermittent access standard deviation0.00.00.1-0.00.2-0.2
Left kidney weight1.95.36.71.6-2.62.6
Right kidney weight2.36.67.02.4-2.62.6
Cocaine induced anxiety0.20.20.20.5-0.50.5
Post-drug Anxiety1.41.63.11.8-0.90.9
Baseline Anxiety1.11.12.11.5-0.80.8
Tail length1.13.34.01.4-2.02.0
Length with tail0.62.12.31.3-1.51.5
Length without tail0.10.30.70.9-0.20.2
Times rat made contact with spout0.60.71.10.3-1.01.0
Lifetime Intake0.91.11.3-0.81.1-1.1
Liver weight, left0.30.41.21.10.2-0.2
Liver weight, right0.71.22.21.5-0.80.8
Locomotor activity1.01.53.31.8-0.80.8
Locomotor testing distance1.22.13.51.9-1.21.2
Locomotor testing rearing1.32.05.02.20.7-0.7
Locomotion in novel chamber0.91.11.6-0.1-1.31.3
Locomotion in novel chamber post-restriction2.93.45.00.6-2.22.2
Fecal boli incidents, locomotor time 10.90.91.30.6-1.11.1
Change in fecal boli incidents, locomotor task0.40.40.6-0.00.8-0.8
Time >=10cm from walls, locomotor time 11.61.62.31.5-1.11.1
Bouts of movement, locomotor time 10.50.60.6-0.70.8-0.8
Total resting periods, locomotor time 11.11.21.3-1.11.1-1.1
Rest time, locomotor task time 12.22.46.7-2.60.5-0.5
Distance moved, locomotor task time 12.12.36.42.5-0.50.5
Vertical activity count, locomotor time 10.70.71.81.30.4-0.4
Time >=10cm from walls, locomotor time 21.21.31.71.3-1.01.0
Bouts of movement, locomotor time 20.40.50.50.7-0.70.7
Total resting periods, locomotor time 20.60.60.60.8-0.80.8
Rest time, locomotor task time 20.40.51.0-1.00.5-0.5
Distance moved, locomotor task time 20.50.61.61.3-0.20.2
Vertical activity count, locomotor time 20.00.00.00.0-0.00.0
Light reinforcement 10.20.41.11.0-0.30.3
Light reinforcement 20.00.00.00.10.1-0.1
Bone: marrow area0.10.20.2-0.40.5-0.5
Bone: maximum diameter0.10.20.40.6-0.20.2
Bone: maximum force0.81.31.7-1.31.1-1.1
Bone: maximum moment0.91.61.6-1.21.3-1.3
Mean time between licks in bursts0.00.00.1-0.4-0.00.0
Mean num. licks in bursts0.00.00.0-0.20.1-0.1
Cd content in liver1.01.11.5-1.2-1.01.0
Co content in liver1.21.43.1-1.80.7-0.7
Cu content in liver0.91.11.5-0.51.2-1.2
Fe content in liver0.20.20.5-0.7-0.20.2
K content in liver1.41.42.51.6-0.90.9
Mg content in liver0.20.20.60.8-0.20.2
Mn content in liver0.20.30.60.8-0.30.3
Na content in liver0.70.72.11.4-0.00.0
Rb content in liver0.60.71.91.4-0.30.3
Se content in liver0.40.51.1-1.10.4-0.4
Sr content in liver0.20.20.50.70.1-0.1
Zn content in liver1.31.42.10.2-1.51.5
Bone: minimum diameter1.22.22.6-1.61.4-1.4
Time in familiar zone, hab. session 10.20.20.20.4-0.40.4
Time in novel zone, hab. session 10.00.00.0-0.20.2-0.2
Total zone transitions, hab. session 10.40.50.90.9-0.60.6
Total locomotion distance, hab. session 10.00.00.10.30.0-0.0
Locomotion velocity, hab. session 10.00.00.10.3-0.10.1
Time in familiar zone, hab. session 20.10.10.1-0.2-0.40.4
Time in novel zone, hab. session 20.10.10.20.40.1-0.1
Total zone transitions, hab. session 21.92.52.91.3-1.71.7
Total locomotion distance, hab. session 22.12.83.01.6-1.71.7
Locomotion velocity, hab. session 21.82.42.41.5-1.51.5
Novel to familiar place preference ratio0.10.10.1-0.20.4-0.4
Novelty place preference0.10.10.2-0.40.2-0.2
Time in novel zone, NPP test0.20.20.3-0.50.5-0.5
Total zone transitions, NPP test2.33.34.60.8-2.12.1
Total locomotion distance, NPP test0.81.11.70.1-1.31.3
Locomotion velocity, NPP test1.42.02.90.4-1.71.7
Intraocular pressure0.20.30.50.1-0.70.7
Delta distance traveled before/after self-admin2.32.43.2-1.01.8-1.8
Delta ambulatory time before/after self-admin1.51.61.9-1.01.4-1.4
Parametrial fat weight0.10.20.3-0.00.5-0.5
Pavlov. Cond. lever latency0.10.20.4-0.7-0.10.1
Pavlov. Cond. magazine entry latency1.41.92.01.2-1.41.4
Pavlov. Cond. change in total contacts0.20.20.20.5-0.50.5
Pavlov. Cond. index score0.30.40.70.8-0.50.5
Pavlov. Cond. latency score0.40.50.70.8-0.60.6
Pavlov. Cond. lever contacts0.10.10.30.5-0.00.0
Pavlov. Cond. magazine entry number1.01.21.7-1.31.0-1.0
Pavlov. Cond. intertrial magazine entries1.41.72.5-0.31.6-1.6
Pavlov. Cond. lever-magazine prob. diff.0.50.60.80.9-0.70.7
Pavlov. Cond. response bias1.01.21.41.2-1.01.0
Pavlov. Cond. lever latency0.20.20.3-0.50.4-0.4
Pavlov. Cond. magazine entry latency0.70.81.00.5-1.01.0
Pavlov. Cond. change in total contacts1.92.73.11.4-1.81.8
Pavlov. Cond. index score0.70.91.00.8-1.01.0
Pavlov. Cond. latency score0.91.11.50.6-1.21.2
Pavlov. Cond. lever contacts0.50.60.80.5-0.90.9
Pavlov. Cond. magazine entry number1.72.12.5-1.21.6-1.6
Pavlov. Cond. intertrial magazine entries0.30.40.50.50.7-0.7
Pavlov. Cond. lever-magazine prob. diff.0.91.11.30.9-1.11.1
Pavlov. Cond. response bias0.60.81.00.6-1.01.0
Time in closed arm before self-admin0.10.10.1-0.2-0.40.4
Time in closed arm after self-admin0.20.20.5-0.70.1-0.1
Time in open arm before self-admin0.00.00.00.2-0.10.1
Time in open arm after self-admin0.10.10.2-0.10.4-0.4
Bone: periosteal estimation0.10.30.3-0.30.6-0.6
Bone: periosteal perimeter0.20.40.80.90.4-0.4
Bone: post-yield work0.00.00.10.30.1-0.1
Progressive ratio test 1 active lever presses0.00.00.10.20.2-0.2
Progressive ratio test 1 breakpoint0.00.00.0-0.00.2-0.2
Progressive ratio test 1 inactive lever presses0.80.80.80.9-0.90.9
Progressive ratio test 2 active lever presses2.62.83.3-1.41.8-1.8
Progressive ratio test 2 breakpoint2.52.83.2-1.41.8-1.8
Progressive ratio test 2 inactive lever presses0.00.00.00.20.2-0.2
Incentive Sensitization - Responses1.91.92.0-1.31.4-1.4
Incentive Sensitization - Breakpoint2.02.12.3-1.51.4-1.4
Sum of active levers in priming session hrs 5-60.10.10.1-0.40.2-0.2
Progressive ratio0.40.40.8-0.90.5-0.5
Food seeking constrained by brief footshock3.13.84.6-1.52.2-2.2
Seeking ratio, punishment vs. effort0.20.20.3-0.10.6-0.6
Retroperitoneal fat weight0.10.41.11.0-0.30.3
Reaction time number correct1.31.82.1-1.21.4-1.4
Reaction time mean minus median0.70.91.30.31.1-1.1
Reaction time mean minus median AUC0.50.71.00.21.0-1.0
Reaction time num false alarms0.70.92.7-1.7-0.20.2
Reaction time num false alarms AUC0.50.61.2-1.1-0.60.6
Reaction time trials correct on left1.31.82.1-1.21.4-1.4
Reaction time trials on left1.11.61.8-1.11.3-1.3
Reaction time mean0.60.92.11.40.5-0.5
Reaction time mean AUC0.60.81.81.30.5-0.5
Median of all reaction times0.60.82.21.50.4-0.4
Reaction time omissions1.21.72.01.0-1.41.4
Reaction time false alarm rate0.81.21.7-0.2-1.31.3
Reaction time premature initiation rate0.30.40.60.8-0.60.6
Reaction time premature initiations0.00.00.10.30.1-0.1
Std. dev. reaction times0.30.41.01.0-0.30.3
Reaction time trials completed1.11.61.8-1.11.3-1.3
Reaction time trials AUC1.11.61.7-1.21.3-1.3
Run reversals in cocaine runway, females2.62.53.40.9-1.81.8
Run reversals in cocaine runway, males1.21.21.60.6-1.31.3
Latency to leave start box in cocaine runway1.11.23.31.8-0.40.4
Latency to leave start box in cocaine runway, F0.40.51.31.2-0.10.1
Latency to leave start box in cocaine runway, M0.60.51.61.20.2-0.2
Std. dev. time between licks in bursts0.80.91.40.2-1.21.2
Total sessions with >9 infusions1.11.22.91.70.6-0.6
Short access day 1 total inactive lever presses0.70.81.51.2-0.70.7
Short access day 10 total inactive lever presses1.71.92.01.3-1.41.4
Short access day 1 total infusions0.10.10.20.50.2-0.2
Short access day 10 total infusions0.60.60.7-0.70.8-0.8
Short access total infusions0.20.20.30.20.6-0.6
Short access day 1 locomotion0.70.71.8-1.30.4-0.4
Short access day 10 total locomotion0.10.10.1-0.30.2-0.2
Short access total locomotion0.60.60.9-0.11.0-1.0
One hour access (0.3 mA shock)4.35.16.5-1.52.5-2.5
Compulsive drug intake0.60.60.70.60.8-0.8
One hour access (shock baseline)2.52.93.6-1.91.6-1.6
Social response proportion0.60.71.91.40.2-0.2
Social responses0.91.11.91.4-0.90.9
Social time0.40.51.11.0-0.40.4
Soleus weight0.82.44.2-2.01.2-1.2
Bone: stiffness0.30.41.1-1.10.2-0.2
Tibialis anterior weight2.17.210.3-1.03.2-3.2
Time to tail flick, vehicle, before self-admin1.41.43.71.9-0.50.5
Time to tail flick, vehicle, after self-admin1.92.02.8-0.7-1.71.7
Time to tail flick, test, before self-admin0.20.20.20.4-0.40.4
Time to tail flick, test, after self-admin0.60.60.90.3-1.01.0
Delta time to tail flick, vehicle, before/after SA1.21.21.7-0.5-1.31.3
Delta time to tail flick, test, before/after SA0.40.40.60.7-0.50.5
Tibia length0.61.73.81.9-0.80.8
Ambulatory time before self-admin1.11.11.31.1-1.01.0
Ambulatory time after self-admin0.10.10.1-0.20.3-0.3
Bone: tissue strength0.50.51.31.10.4-0.4
Total heroin consumption0.10.10.1-0.4-0.40.4
Bone: trabecular number0.50.82.21.50.2-0.2
Bone: trabecular spacing0.70.91.4-1.20.8-0.8
Bone: trabecular thickness0.20.30.80.9-0.20.2
Bone: trabecular tissue density0.91.22.71.70.7-0.7
Water consumed over 24 hours0.00.00.0-0.2-0.00.0
Number of responses in last shaping day2.52.63.2-1.81.5-1.5