Thoc5

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression Thoc5 0.03 0.03 7.7e-03 0 0.02 0.01 0.01 1.2e-01 8.2e-03 2.2e-02 3.1e-02
2 Adipose gene expression Thoc5 0.07 0.05 1.7e-05 0.03 0.03 0.01 0.03 7.8e-04 1.8e-04 9.7e-03 2.4e-04
3 NAcc gene expression Thoc5 0.02 0.02 5.4e-03 0.02 0.01 0.01 0.01 1.2e-03 2.1e-03 3.4e-03 1.9e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.50.81.01.0-1.00.7
Area under the delay curve0.81.02.2-1.50.7-0.3
BMI with tail0.10.50.7-0.70.8-0.6
BMI without tail0.10.20.4-0.2-0.40.6
Body weight0.20.82.3-1.50.4-0.1
Weight adjusted by age0.20.30.60.1-0.60.8
Bone surface0.00.00.00.0-0.20.2
Bone volume0.10.10.20.2-0.40.4
Breakpoint value in progressive ratio session0.20.30.5-0.70.4-0.3
Number of licking bursts0.20.30.9-0.90.10.3
Context. condit. distance diff. score0.81.02.41.6-0.70.2
Locomotion velocity, session 13.13.34.0-1.51.9-2.0
Locomotion distance, session 11.01.31.51.2-1.01.1
Locomotion velocity, session 22.42.83.6-1.31.9-1.8
Locomotion distance, session 20.20.20.40.60.3-0.4
Locomotion velocity, session 31.41.63.11.8-1.10.8
Locomotion distance, session 30.00.00.00.10.10.1
Stereotopy head waving bouts, day 30.50.51.11.0-0.60.4
Stereotopy head waving duration, day 30.30.30.80.9-0.3-0.0
Locomotion velocity, session 70.10.10.2-0.40.4-0.1
Locomotion distance, session 70.10.10.10.00.4-0.4
Stereotopy head waving bouts, day 70.00.00.00.2-0.20.1
Stereotopy head waving duration, day 70.30.30.40.5-0.60.5
Locomotion velocity, session 80.70.81.40.01.0-1.2
Locomotion distance, session 81.31.84.92.2-0.70.2
Degree of sensitization distance0.20.20.50.30.3-0.7
Degree of sensitization stereotypy0.00.00.0-0.1-0.20.1
Conditioned locomotion1.92.22.91.7-1.51.2
Cocaine response after cond. corrected0.20.30.8-0.90.20.2
Cocaine response after cond. not corrected0.30.30.6-0.6-0.20.8
Cocaine response before conditioning0.40.50.60.8-0.60.8
Saline control response0.10.10.20.20.3-0.4
Bone: connectivity density0.40.70.90.9-0.90.6
Bone: cortical apparent density0.10.10.3-0.50.10.1
Bone: cortical area0.20.30.8-0.90.00.4
Bone: cortical porosity0.20.20.30.2-0.40.5
Bone: cortical porosity0.40.40.40.6-0.70.6
Bone: cortical thickness0.50.81.6-0.0-0.81.3
Bone: cortical thickness2.53.03.21.8-1.81.6
Bone: cortical tissue density0.10.20.4-0.60.20.0
Condit. Reinf. active minus inactive responses2.52.83.0-1.61.7-1.7
Condit. Reinf. active-inactive response ratio5.35.77.2-1.92.5-2.7
Condit. Reinf. active responses1.01.21.4-1.01.1-1.2
Condit. Reinf. inactive responses0.60.80.90.7-1.01.0
Incentive salience index mean1.41.71.9-1.41.4-1.2
Condit. Reinf. lever presses0.00.00.1-0.10.10.3
Condit. Reinf. active minus inactive responses0.10.10.30.5-0.20.1
Condit. Reinf. active-inactive response ratio0.00.00.0-0.10.2-0.2
Condit. Reinf. active responses0.00.10.20.40.1-0.1
Condit. Reinf. inactive responses0.10.10.10.30.2-0.3
Condit. Reinf. lever presses0.20.30.60.8-0.40.5
Condit. Reinf. lever reinforcers received0.00.00.10.40.0-0.0
Conditioned reinforcement - actives0.10.20.3-0.60.4-0.2
Conditioned reinforcement - inactives0.30.50.9-1.00.6-0.3
Conditioned locomotion0.10.10.3-0.60.10.3
Patch foraging indifference point 0 sec0.20.30.9-0.90.20.0
Patch foraging indifference point AUC0.10.10.2-0.40.5-0.2
Delay disc. indifference point, 0s delay0.10.10.2-0.5-0.10.3
Delay disc. indifference point, 16s delay2.52.73.9-2.01.6-1.3
Delay disc. indifference point, 2s delay0.70.81.50.1-0.91.2
Delay disc. indifference point, 24s delay1.01.21.6-1.31.0-0.9
Delay disc. indifference point, 4s delay0.30.30.5-0.7-0.20.6
Delay disc. indifference point, 8s delay0.50.61.1-1.00.7-0.5
Indifference point function ln k0.30.60.70.8-0.90.7
Indifference point function log k0.30.60.70.8-0.90.7
Patch foraging total patch changes 0 sec0.20.41.2-1.10.4-0.2
Patch foraging total patch changes 12 sec0.10.20.5-0.70.20.2
Patch foraging total patch changes 18 sec2.03.04.0-2.01.7-1.5
Patch foraging total patch changes 24 sec0.10.20.50.20.4-0.7
Patch foraging total patch changes 6 sec0.30.51.2-1.10.6-0.2
Patch foraging time to switch 0 sec0.10.20.30.6-0.50.3
Patch foraging water rate 0 sec0.61.32.2-1.51.1-0.7
Patch foraging water rate 12 sec0.00.00.0-0.10.1-0.1
Patch foraging water rate 18 sec1.92.93.61.4-1.91.8
Patch foraging water rate 24 sec0.50.70.8-0.80.9-0.9
Patch foraging water rate 6 sec0.10.10.2-0.1-0.30.4
Seeking ratio, delayed vs. immediate footshock0.00.10.1-0.20.2-0.3
Distance traveled before self-admin0.91.21.90.6-1.21.4
Distance traveled after self-admin1.82.22.71.2-1.61.6
Extensor digitorum longus weight0.31.13.2-1.80.20.2
Bone: elastic displacement1.21.31.61.2-1.31.0
Bone: elastic work1.31.72.31.0-1.51.4
Bone: endosteal estimation0.00.00.1-0.20.0-0.1
Bone: endosteal perimeter0.20.51.0-1.00.5-0.4
Epididymis fat weight0.10.20.5-0.1-0.30.7
Delta time in closed arm before/after self-admin2.32.14.72.2-1.20.6
Delta time in open arm before/after self-admin3.23.16.0-2.41.6-1.0
Diff in mean of infusions in LGA sessions0.10.20.30.3-0.30.5
Delay discount exponential model param0.80.92.01.4-0.70.3
Extinction: sum of active levers before priming0.91.01.5-0.71.0-1.2
Active lever presses in extinction session 60.30.30.30.5-0.60.5
Bone: final force0.00.00.1-0.2-0.00.1
Bone: final moment0.00.10.1-0.2-0.20.3
Food consumed during 24 hour testing period2.53.44.0-2.01.9-1.7
Glucose31.649.758.6-7.77.1-6.3
Heart weight1.32.12.6-1.21.5-1.6
Delay discount hyperbolic model param0.60.61.71.3-0.50.1
Intermittent access intake day 1-15 change1.02.02.1-1.41.4-1.3
Intermittent access intake escalation0.71.51.6-1.21.3-1.2
Intermittent access intake escalation 20.20.20.3-0.50.5-0.5
Intermitt. access day 1 inactive lever presses0.00.00.00.00.2-0.2
Intermitt. access day 15 inactive lever presses1.83.74.3-2.11.9-1.7
Intermitt. access escalation Index1.41.92.5-1.11.5-1.6
Intermittent access day 1 total infusions0.20.40.80.1-0.60.9
Intermittent access day 15 total infusions0.50.71.6-1.30.7-0.3
Intermittent access terminal intake (last 3 days)0.30.30.8-0.90.4-0.1
Intermittent access total infusions0.20.20.5-0.70.20.2
Intermittent access day 1 locomotion0.60.81.10.7-0.91.0
Intermittent access day 15 total locomotion0.30.51.1-1.10.6-0.2
Intermittent access total locomotion0.20.20.7-0.80.30.0
Intermittent access standard deviation0.40.81.01.0-0.90.8
Left kidney weight0.31.52.10.7-1.41.3
Right kidney weight1.46.37.92.0-2.82.6
Cocaine induced anxiety0.71.02.0-1.40.9-0.5
Post-drug Anxiety1.11.21.8-1.31.0-0.8
Baseline Anxiety0.20.30.5-0.20.5-0.7
Tail length0.31.11.7-0.8-0.91.3
Length with tail0.20.91.1-1.0-0.71.1
Length without tail0.00.00.1-0.40.00.1
Times rat made contact with spout3.33.84.5-1.52.1-2.1
Lifetime Intake0.10.20.3-0.5-0.10.5
Liver weight, left1.52.42.71.5-1.61.5
Liver weight, right1.22.02.61.6-1.41.2
Locomotor activity1.32.02.8-1.71.4-1.1
Locomotor testing distance0.30.61.20.1-0.81.1
Locomotor testing rearing0.30.61.5-1.20.6-0.2
Locomotion in novel chamber2.12.74.42.1-1.61.1
Locomotion in novel chamber post-restriction0.50.71.60.30.8-1.2
Fecal boli incidents, locomotor time 10.10.10.2-0.00.3-0.4
Change in fecal boli incidents, locomotor task1.51.51.7-1.11.3-1.3
Time >=10cm from walls, locomotor time 10.10.10.1-0.30.3-0.3
Bouts of movement, locomotor time 11.82.12.2-1.41.5-1.4
Total resting periods, locomotor time 12.12.42.8-1.31.6-1.7
Rest time, locomotor task time 10.50.60.8-0.60.8-0.9
Distance moved, locomotor task time 10.40.61.10.3-0.81.0
Vertical activity count, locomotor time 10.10.20.40.1-0.40.6
Time >=10cm from walls, locomotor time 20.20.20.3-0.40.5-0.5
Bouts of movement, locomotor time 20.00.00.00.0-0.0-0.1
Total resting periods, locomotor time 20.00.10.1-0.20.2-0.4
Rest time, locomotor task time 20.10.10.2-0.00.3-0.4
Distance moved, locomotor task time 20.00.00.00.1-0.10.1
Vertical activity count, locomotor time 20.00.00.10.1-0.20.3
Light reinforcement 10.20.61.00.5-0.81.0
Light reinforcement 20.60.91.40.5-1.01.2
Bone: marrow area0.00.00.0-0.20.0-0.1
Bone: maximum diameter2.24.27.3-2.71.9-1.3
Bone: maximum force0.10.20.40.2-0.50.6
Bone: maximum moment0.20.40.70.2-0.70.8
Mean time between licks in bursts1.33.23.4-1.81.9-1.8
Mean num. licks in bursts1.01.52.7-0.21.3-1.6
Cd content in liver0.91.11.2-1.11.0-1.0
Co content in liver0.20.20.40.3-0.50.6
Cu content in liver0.30.30.4-0.60.5-0.5
Fe content in liver0.20.30.40.60.2-0.6
K content in liver1.31.22.40.3-1.11.5
Mg content in liver0.10.10.30.1-0.30.6
Mn content in liver0.80.91.40.7-0.91.2
Na content in liver1.61.72.5-1.61.2-1.0
Rb content in liver0.20.30.5-0.6-0.10.7
Se content in liver0.50.61.30.3-0.71.1
Sr content in liver2.72.33.7-1.91.4-1.1
Zn content in liver0.20.20.30.2-0.50.6
Bone: minimum diameter0.10.20.20.4-0.50.5
Time in familiar zone, hab. session 10.20.10.20.5-0.40.3
Time in novel zone, hab. session 10.10.10.2-0.2-0.20.5
Total zone transitions, hab. session 10.00.10.1-0.20.4-0.2
Total locomotion distance, hab. session 10.10.10.4-0.0-0.00.6
Locomotion velocity, hab. session 10.10.10.2-0.30.50.0
Time in familiar zone, hab. session 20.20.20.50.7-0.3-0.0
Time in novel zone, hab. session 20.30.30.7-0.80.30.1
Total zone transitions, hab. session 20.20.30.5-0.70.6-0.1
Total locomotion distance, hab. session 20.60.71.1-1.01.0-0.4
Locomotion velocity, hab. session 20.50.71.2-1.10.9-0.3
Novel to familiar place preference ratio1.92.12.5-1.61.4-1.4
Novelty place preference2.02.22.6-1.61.4-1.4
Time in novel zone, NPP test1.92.02.3-1.51.4-1.3
Total zone transitions, NPP test0.91.21.51.2-1.01.1
Total locomotion distance, NPP test0.30.40.50.6-0.50.7
Locomotion velocity, NPP test0.10.20.40.4-0.30.6
Intraocular pressure1.31.82.0-1.31.4-1.3
Delta distance traveled before/after self-admin0.20.20.40.7-0.40.2
Delta ambulatory time before/after self-admin0.20.30.60.8-0.40.2
Parametrial fat weight6.916.316.8-4.14.1-3.9
Pavlov. Cond. lever latency0.40.50.8-0.90.7-0.5
Pavlov. Cond. magazine entry latency0.60.82.01.4-0.70.2
Pavlov. Cond. change in total contacts0.30.30.5-0.70.5-0.6
Pavlov. Cond. index score1.11.32.81.7-1.00.6
Pavlov. Cond. latency score1.01.22.41.5-1.00.6
Pavlov. Cond. lever contacts0.81.01.71.3-0.90.7
Pavlov. Cond. magazine entry number0.60.72.0-1.40.5-0.1
Pavlov. Cond. intertrial magazine entries0.50.60.90.2-0.91.0
Pavlov. Cond. lever-magazine prob. diff.1.41.73.51.9-1.10.7
Pavlov. Cond. response bias0.91.12.11.4-0.80.6
Pavlov. Cond. lever latency0.60.81.5-0.4-0.81.2
Pavlov. Cond. magazine entry latency0.10.10.20.4-0.3-0.1
Pavlov. Cond. change in total contacts0.10.20.4-0.10.5-0.6
Pavlov. Cond. index score0.20.20.40.40.3-0.7
Pavlov. Cond. latency score0.20.20.50.70.0-0.5
Pavlov. Cond. lever contacts0.40.61.00.60.6-1.0
Pavlov. Cond. magazine entry number0.20.20.40.1-0.40.7
Pavlov. Cond. intertrial magazine entries0.00.00.0-0.10.20.0
Pavlov. Cond. lever-magazine prob. diff.0.20.20.40.60.1-0.5
Pavlov. Cond. response bias0.40.51.00.20.7-1.0
Time in closed arm before self-admin0.60.71.40.3-0.81.2
Time in closed arm after self-admin2.12.23.11.8-1.41.3
Time in open arm before self-admin0.20.20.40.7-0.3-0.1
Time in open arm after self-admin2.52.82.8-1.71.7-1.6
Bone: periosteal estimation0.10.10.4-0.60.00.2
Bone: periosteal perimeter0.30.51.3-1.10.4-0.1
Bone: post-yield work0.00.00.0-0.10.00.0
Progressive ratio test 1 active lever presses0.10.10.2-0.50.10.2
Progressive ratio test 1 breakpoint0.10.10.3-0.50.10.1
Progressive ratio test 1 inactive lever presses1.11.63.4-1.91.1-0.5
Progressive ratio test 2 active lever presses0.30.30.7-0.90.5-0.2
Progressive ratio test 2 breakpoint0.30.40.7-0.90.6-0.3
Progressive ratio test 2 inactive lever presses1.22.02.8-1.71.4-1.1
Incentive Sensitization - Responses0.40.50.6-0.80.7-0.6
Incentive Sensitization - Breakpoint0.30.40.5-0.70.7-0.6
Sum of active levers in priming session hrs 5-60.00.00.00.0-0.10.1
Progressive ratio0.20.30.30.5-0.50.6
Food seeking constrained by brief footshock1.01.32.4-0.0-1.21.5
Seeking ratio, punishment vs. effort0.10.10.2-0.2-0.30.5
Retroperitoneal fat weight1.66.97.2-2.62.7-2.6
Reaction time number correct0.20.50.6-0.50.7-0.8
Reaction time mean minus median0.30.71.1-0.10.9-1.1
Reaction time mean minus median AUC0.00.10.20.40.2-0.2
Reaction time num false alarms0.71.01.30.8-1.01.1
Reaction time num false alarms AUC1.32.12.61.2-1.51.6
Reaction time trials correct on left0.20.50.6-0.50.7-0.8
Reaction time trials on left0.20.40.6-0.40.7-0.8
Reaction time mean0.00.10.10.20.3-0.3
Reaction time mean AUC0.10.10.30.5-0.0-0.0
Median of all reaction times0.00.00.00.20.0-0.0
Reaction time omissions0.30.41.01.0-0.40.2
Reaction time false alarm rate2.12.83.61.3-1.81.9
Reaction time premature initiation rate2.53.55.02.2-1.71.6
Reaction time premature initiations0.81.42.41.5-1.00.9
Std. dev. reaction times0.30.50.8-0.00.8-0.9
Reaction time trials completed0.20.40.6-0.40.7-0.8
Reaction time trials AUC0.20.40.5-0.50.7-0.7
Run reversals in cocaine runway, females0.10.10.20.5-0.0-0.0
Run reversals in cocaine runway, males0.00.00.1-0.2-0.20.3
Latency to leave start box in cocaine runway0.50.60.90.5-0.80.9
Latency to leave start box in cocaine runway, F0.80.91.60.3-1.01.3
Latency to leave start box in cocaine runway, M0.00.00.10.30.1-0.1
Std. dev. time between licks in bursts0.10.20.3-0.20.4-0.5
Total sessions with >9 infusions1.82.12.41.4-1.41.5
Short access day 1 total inactive lever presses0.40.51.3-1.10.10.5
Short access day 10 total inactive lever presses0.00.00.1-0.1-0.20.3
Short access day 1 total infusions1.52.02.11.4-1.41.5
Short access day 10 total infusions0.60.81.00.7-0.91.0
Short access total infusions0.81.01.50.6-1.01.2
Short access day 1 locomotion3.64.54.62.1-2.22.1
Short access day 10 total locomotion1.52.83.11.6-1.71.8
Short access total locomotion3.03.63.71.9-1.91.9
One hour access (0.3 mA shock)0.40.41.0-1.00.5-0.2
Compulsive drug intake0.50.61.21.1-0.60.4
One hour access (shock baseline)0.50.81.6-1.30.8-0.5
Social response proportion3.33.84.0-2.02.0-1.9
Social responses3.34.34.8-2.22.1-1.9
Social time0.81.11.4-0.91.0-1.2
Soleus weight0.31.01.50.0-1.21.2
Bone: stiffness0.00.00.00.1-0.00.1
Tibialis anterior weight0.20.81.9-1.40.5-0.4
Time to tail flick, vehicle, before self-admin0.20.20.30.3-0.40.5
Time to tail flick, vehicle, after self-admin0.20.20.30.5-0.40.6
Time to tail flick, test, before self-admin0.40.40.50.5-0.70.7
Time to tail flick, test, after self-admin0.30.40.5-0.7-0.10.7
Delta time to tail flick, vehicle, before/after SA0.00.00.0-0.00.2-0.1
Delta time to tail flick, test, before/after SA0.90.91.4-1.21.0-0.7
Tibia length1.33.64.21.6-2.02.0
Ambulatory time before self-admin0.81.22.00.5-1.21.4
Ambulatory time after self-admin1.31.51.90.9-1.31.4
Bone: tissue strength0.10.10.1-0.30.2-0.4
Total heroin consumption0.00.00.10.2-0.20.3
Bone: trabecular number0.61.01.40.9-1.20.9
Bone: trabecular spacing0.81.11.8-1.31.0-0.6
Bone: trabecular thickness1.82.33.11.8-1.61.1
Bone: trabecular tissue density0.71.01.4-0.61.1-1.2
Water consumed over 24 hours1.92.62.8-1.71.7-1.5
Number of responses in last shaping day0.00.00.10.30.1-0.1