Tectb

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 NAcc gene expression Tectb 0.02 0.01 7.0e-03 0.01 0.01 0 0.01 3.3e-02 2.3e-03 1.2e-01 1.2e-02
2 PL gene expression Tectb 0.04 0.03 2.8e-04 0.01 0.04 0.04 0.03 2.4e-02 7.3e-05 7.7e-05 5.5e-04
3 Adipose gene expression Tectb 0.13 0.08 1.1e-10 0.07 0.03 0.08 0.07 4.9e-08 3.2e-04 2.1e-09 3.7e-08

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density2.03.65.42.32.3-0.3
Area under the delay curve1.21.82.11.51.4-1.1
BMI with tail6.221.826.25.15.13.6
BMI without tail2.010.711.43.43.33.1
Body weight7.432.340.96.46.44.0
Weight adjusted by age1.03.05.41.41.32.3
Bone surface0.50.91.31.11.20.3
Bone volume2.14.16.02.42.40.7
Breakpoint value in progressive ratio session1.22.32.81.71.6-1.1
Number of licking bursts0.61.72.11.41.4-0.9
Context. condit. distance diff. score1.11.41.8-1.3-1.30.8
Locomotion velocity, session 11.21.33.2-0.6-0.6-1.8
Locomotion distance, session 10.50.71.0-1.0-1.00.2
Locomotion velocity, session 22.02.43.3-1.8-1.80.9
Locomotion distance, session 20.91.21.31.11.11.1
Locomotion velocity, session 30.30.30.4-0.5-0.50.6
Locomotion distance, session 31.41.73.6-0.8-0.81.9
Stereotopy head waving bouts, day 30.10.10.20.40.4-0.0
Stereotopy head waving duration, day 30.50.61.6-0.2-0.1-1.3
Locomotion velocity, session 70.00.00.10.20.2-0.1
Locomotion distance, session 70.30.40.4-0.6-0.60.5
Stereotopy head waving bouts, day 70.10.10.10.30.3-0.3
Stereotopy head waving duration, day 70.50.60.80.90.9-0.5
Locomotion velocity, session 81.21.52.3-1.5-1.5-0.3
Locomotion distance, session 80.71.01.1-1.1-1.10.9
Degree of sensitization distance1.21.33.80.10.1-1.9
Degree of sensitization stereotypy0.30.40.40.70.6-0.5
Conditioned locomotion0.10.10.1-0.3-0.30.3
Cocaine response after cond. corrected1.21.82.7-1.6-1.60.5
Cocaine response after cond. not corrected1.62.43.6-1.9-1.9-0.1
Cocaine response before conditioning0.60.72.1-0.2-0.1-1.5
Saline control response0.91.21.8-1.4-1.3-0.1
Bone: connectivity density0.00.10.20.00.1-0.4
Bone: cortical apparent density4.77.59.7-3.1-3.11.8
Bone: cortical area5.08.211.83.43.41.1
Bone: cortical porosity0.50.60.70.70.7-0.8
Bone: cortical porosity1.41.62.01.41.4-0.9
Bone: cortical thickness2.03.44.12.02.01.4
Bone: cortical thickness1.11.32.20.90.91.5
Bone: cortical tissue density4.87.610.1-3.2-3.21.6
Condit. Reinf. active minus inactive responses0.00.00.10.1-0.0-0.4
Condit. Reinf. active-inactive response ratio0.20.20.2-0.3-0.4-0.4
Condit. Reinf. active responses0.60.71.11.10.9-0.4
Condit. Reinf. inactive responses1.31.72.41.51.5-0.6
Incentive salience index mean0.20.30.5-0.3-0.4-0.7
Condit. Reinf. lever presses0.40.51.4-0.3-0.3-1.2
Condit. Reinf. active minus inactive responses1.72.63.91.41.3-2.0
Condit. Reinf. active-inactive response ratio0.61.02.40.60.4-1.5
Condit. Reinf. active responses2.83.94.42.12.0-1.8
Condit. Reinf. inactive responses1.11.62.11.51.5-0.7
Condit. Reinf. lever presses1.52.12.41.41.4-1.6
Condit. Reinf. lever reinforcers received2.53.53.71.91.8-1.8
Conditioned reinforcement - actives0.20.61.00.60.6-1.0
Conditioned reinforcement - inactives0.41.11.51.21.2-0.4
Conditioned locomotion0.00.10.1-0.3-0.30.1
Patch foraging indifference point 0 sec1.13.24.12.02.01.2
Patch foraging indifference point AUC1.22.83.21.71.8-1.6
Delay disc. indifference point, 0s delay0.70.81.21.11.10.2
Delay disc. indifference point, 16s delay0.81.21.71.01.0-1.3
Delay disc. indifference point, 2s delay0.00.00.00.10.2-0.2
Delay disc. indifference point, 24s delay2.23.63.61.91.9-1.9
Delay disc. indifference point, 4s delay0.50.50.70.60.6-0.8
Delay disc. indifference point, 8s delay2.44.05.62.42.4-0.9
Indifference point function ln k0.30.91.1-1.0-1.10.8
Indifference point function log k0.30.91.1-1.0-1.10.8
Patch foraging total patch changes 0 sec1.23.44.82.22.20.9
Patch foraging total patch changes 12 sec1.72.33.41.81.8-0.4
Patch foraging total patch changes 18 sec2.86.59.33.03.0-1.0
Patch foraging total patch changes 24 sec1.65.67.12.72.7-1.6
Patch foraging total patch changes 6 sec3.15.37.82.82.80.6
Patch foraging time to switch 0 sec0.41.32.1-1.4-1.40.2
Patch foraging water rate 0 sec0.20.81.21.11.10.1
Patch foraging water rate 12 sec0.31.21.81.31.30.1
Patch foraging water rate 18 sec0.10.30.70.40.40.8
Patch foraging water rate 24 sec1.42.12.81.71.70.8
Patch foraging water rate 6 sec0.20.30.8-0.1-0.10.9
Seeking ratio, delayed vs. immediate footshock0.10.10.1-0.4-0.3-0.3
Distance traveled before self-admin2.04.44.8-2.2-2.21.9
Distance traveled after self-admin1.01.72.6-1.1-1.11.6
Extensor digitorum longus weight0.41.82.61.61.60.3
Bone: elastic displacement0.10.10.20.50.4-0.1
Bone: elastic work0.91.23.40.30.31.8
Bone: endosteal estimation1.63.95.82.42.40.5
Bone: endosteal perimeter1.94.76.42.52.51.1
Epididymis fat weight5.829.243.26.66.51.5
Delta time in closed arm before/after self-admin0.70.71.2-0.6-0.61.1
Delta time in open arm before/after self-admin1.61.82.41.51.5-0.9
Diff in mean of infusions in LGA sessions0.40.71.0-0.9-1.0-0.4
Delay discount exponential model param1.52.02.4-1.5-1.51.1
Extinction: sum of active levers before priming1.42.14.70.90.9-2.2
Active lever presses in extinction session 60.40.40.60.70.8-0.0
Bone: final force0.91.52.01.41.40.7
Bone: final moment1.42.23.11.71.80.8
Food consumed during 24 hour testing period0.20.30.8-0.2-0.30.9
Glucose0.71.02.50.50.61.6
Heart weight1.52.53.01.71.61.3
Delay discount hyperbolic model param1.11.41.8-1.3-1.30.9
Intermittent access intake day 1-15 change0.31.92.71.61.60.6
Intermittent access intake escalation0.42.02.91.71.70.6
Intermittent access intake escalation 20.61.11.61.21.30.3
Intermitt. access day 1 inactive lever presses0.44.86.92.62.6-1.0
Intermitt. access day 15 inactive lever presses0.10.40.60.70.7-0.3
Intermitt. access escalation Index0.00.10.3-0.1-0.10.6
Intermittent access day 1 total infusions0.41.21.51.21.2-0.8
Intermittent access day 15 total infusions0.71.72.61.61.6-0.2
Intermittent access terminal intake (last 3 days)0.40.71.11.11.0-0.2
Intermittent access total infusions1.51.72.41.51.6-0.6
Intermittent access day 1 locomotion0.20.30.8-0.1-0.20.9
Intermittent access day 15 total locomotion0.41.62.21.51.50.7
Intermittent access total locomotion0.40.51.30.10.11.2
Intermittent access standard deviation0.41.92.61.61.6-0.7
Left kidney weight0.97.618.91.41.44.4
Right kidney weight1.510.222.22.12.04.7
Cocaine induced anxiety1.33.75.5-2.3-2.30.3
Post-drug Anxiety0.10.10.1-0.3-0.3-0.1
Baseline Anxiety2.64.46.22.52.5-1.0
Tail length0.20.81.01.00.90.8
Length with tail1.25.36.62.62.61.7
Length without tail2.312.217.94.24.21.1
Times rat made contact with spout0.80.91.21.11.10.6
Lifetime Intake1.72.13.01.71.7-0.7
Liver weight, left3.25.58.02.82.80.8
Liver weight, right3.96.87.62.52.62.8
Locomotor activity0.50.82.5-0.1-0.11.6
Locomotor testing distance0.92.25.5-0.7-0.72.3
Locomotor testing rearing0.31.03.0-0.0-0.01.7
Locomotion in novel chamber1.92.64.3-1.3-1.32.1
Locomotion in novel chamber post-restriction0.51.42.1-1.4-1.40.1
Fecal boli incidents, locomotor time 10.10.20.40.10.1-0.6
Change in fecal boli incidents, locomotor task0.20.20.2-0.4-0.40.4
Time >=10cm from walls, locomotor time 10.60.81.0-1.0-0.9-0.7
Bouts of movement, locomotor time 12.73.54.92.22.2-0.9
Total resting periods, locomotor time 12.73.14.42.12.1-0.8
Rest time, locomotor task time 10.20.30.40.50.50.7
Distance moved, locomotor task time 10.00.00.1-0.1-0.1-0.3
Vertical activity count, locomotor time 10.32.12.9-1.6-1.70.9
Time >=10cm from walls, locomotor time 20.20.60.90.91.0-0.2
Bouts of movement, locomotor time 20.10.40.6-0.7-0.7-0.4
Total resting periods, locomotor time 20.00.20.2-0.4-0.4-0.4
Rest time, locomotor task time 20.20.30.4-0.6-0.60.5
Distance moved, locomotor task time 20.70.91.11.11.0-0.7
Vertical activity count, locomotor time 20.10.20.30.50.50.4
Light reinforcement 10.20.91.0-1.0-1.0-0.8
Light reinforcement 20.61.52.0-1.4-1.4-0.6
Bone: marrow area1.64.05.92.42.40.6
Bone: maximum diameter4.79.514.13.73.80.7
Bone: maximum force0.61.11.41.21.20.8
Bone: maximum moment0.91.72.31.51.50.8
Mean time between licks in bursts0.10.81.01.00.9-0.8
Mean num. licks in bursts0.51.33.1-0.7-0.61.8
Cd content in liver3.53.94.0-2.0-2.01.9
Co content in liver1.82.12.8-1.7-1.70.8
Cu content in liver0.20.20.3-0.5-0.50.2
Fe content in liver1.51.92.81.71.6-0.5
K content in liver0.40.40.7-0.5-0.4-0.8
Mg content in liver0.20.20.7-0.0-0.0-0.8
Mn content in liver0.20.20.3-0.5-0.50.2
Na content in liver0.70.81.8-0.5-0.6-1.3
Rb content in liver0.70.92.6-0.1-0.1-1.6
Se content in liver0.91.01.1-1.0-1.0-1.0
Sr content in liver2.92.53.7-1.9-1.90.3
Zn content in liver0.80.91.4-1.2-1.20.2
Bone: minimum diameter3.16.08.72.92.91.0
Time in familiar zone, hab. session 11.71.92.5-1.5-1.60.9
Time in novel zone, hab. session 12.12.33.11.81.8-0.9
Total zone transitions, hab. session 10.81.11.90.90.91.4
Total locomotion distance, hab. session 10.20.30.30.60.5-0.4
Locomotion velocity, hab. session 10.10.20.20.50.5-0.3
Time in familiar zone, hab. session 24.14.67.02.62.6-0.5
Time in novel zone, hab. session 22.52.73.7-1.9-1.90.9
Total zone transitions, hab. session 21.41.82.21.31.21.5
Total locomotion distance, hab. session 20.81.11.41.21.10.7
Locomotion velocity, hab. session 20.40.50.70.80.80.6
Novel to familiar place preference ratio0.10.20.20.40.4-0.5
Novelty place preference0.20.30.30.50.6-0.4
Time in novel zone, NPP test0.70.91.21.11.1-0.5
Total zone transitions, NPP test1.62.33.21.81.80.7
Total locomotion distance, NPP test1.41.92.91.71.70.2
Locomotion velocity, NPP test0.40.60.90.90.90.4
Intraocular pressure3.25.28.12.82.70.3
Delta distance traveled before/after self-admin0.60.71.11.01.10.2
Delta ambulatory time before/after self-admin1.22.03.01.71.7-0.5
Parametrial fat weight9.622.734.15.85.80.7
Pavlov. Cond. lever latency0.50.60.91.00.90.1
Pavlov. Cond. magazine entry latency0.30.40.60.80.8-0.0
Pavlov. Cond. change in total contacts0.20.20.2-0.4-0.40.4
Pavlov. Cond. index score0.10.10.20.10.10.4
Pavlov. Cond. latency score0.00.10.2-0.0-0.00.4
Pavlov. Cond. lever contacts0.40.50.7-0.8-0.8-0.2
Pavlov. Cond. magazine entry number0.60.70.9-0.8-0.8-0.9
Pavlov. Cond. intertrial magazine entries0.10.20.20.40.30.4
Pavlov. Cond. lever-magazine prob. diff.0.00.00.10.10.10.2
Pavlov. Cond. response bias0.00.00.1-0.2-0.10.2
Pavlov. Cond. lever latency2.33.34.7-1.6-1.62.2
Pavlov. Cond. magazine entry latency1.92.63.81.91.9-0.6
Pavlov. Cond. change in total contacts1.63.94.62.22.1-1.7
Pavlov. Cond. index score2.64.04.82.22.2-1.6
Pavlov. Cond. latency score2.54.04.92.22.2-1.5
Pavlov. Cond. lever contacts1.52.22.71.51.4-1.6
Pavlov. Cond. magazine entry number2.12.83.8-1.9-1.90.8
Pavlov. Cond. intertrial magazine entries0.00.10.1-0.3-0.30.4
Pavlov. Cond. lever-magazine prob. diff.2.33.54.32.12.0-1.4
Pavlov. Cond. response bias2.43.33.71.91.9-1.6
Time in closed arm before self-admin0.10.20.2-0.4-0.50.4
Time in closed arm after self-admin0.91.01.3-1.0-1.10.9
Time in open arm before self-admin0.80.91.1-0.9-0.8-1.1
Time in open arm after self-admin1.51.62.61.01.1-1.6
Bone: periosteal estimation3.78.712.33.53.51.3
Bone: periosteal perimeter4.79.313.13.63.61.4
Bone: post-yield work0.61.01.30.90.9-1.2
Progressive ratio test 1 active lever presses1.32.33.41.81.8-0.7
Progressive ratio test 1 breakpoint1.32.33.31.81.7-0.7
Progressive ratio test 1 inactive lever presses1.33.54.32.12.1-1.4
Progressive ratio test 2 active lever presses2.23.14.62.12.1-0.3
Progressive ratio test 2 breakpoint2.53.14.72.22.2-0.2
Progressive ratio test 2 inactive lever presses0.93.04.02.02.0-1.0
Incentive Sensitization - Responses0.72.03.01.71.7-0.4
Incentive Sensitization - Breakpoint0.81.72.61.51.6-0.4
Sum of active levers in priming session hrs 5-60.30.30.7-0.2-0.2-0.9
Progressive ratio0.20.41.2-0.3-0.3-1.1
Food seeking constrained by brief footshock1.31.63.50.80.8-1.9
Seeking ratio, punishment vs. effort0.10.30.50.70.70.2
Retroperitoneal fat weight9.241.361.07.87.81.6
Reaction time number correct0.62.23.41.81.8-0.2
Reaction time mean minus median0.00.10.20.40.5-0.1
Reaction time mean minus median AUC0.00.20.40.10.10.7
Reaction time num false alarms0.10.10.10.40.4-0.3
Reaction time num false alarms AUC0.00.00.00.10.1-0.1
Reaction time trials correct on left0.62.23.41.81.8-0.2
Reaction time trials on left0.72.33.51.81.9-0.2
Reaction time mean0.30.70.8-0.9-0.80.8
Reaction time mean AUC0.40.81.2-1.1-1.10.4
Median of all reaction times0.91.41.7-1.3-1.21.0
Reaction time omissions0.10.10.20.50.4-0.1
Reaction time false alarm rate0.20.30.4-0.6-0.6-0.2
Reaction time premature initiation rate0.50.82.1-0.4-0.41.5
Reaction time premature initiations0.31.02.20.60.71.5
Std. dev. reaction times0.10.40.40.60.70.6
Reaction time trials completed0.72.33.51.81.9-0.2
Reaction time trials AUC0.72.53.71.91.9-0.2
Run reversals in cocaine runway, females0.30.30.70.30.30.8
Run reversals in cocaine runway, males0.50.61.0-0.6-0.6-1.0
Latency to leave start box in cocaine runway0.71.01.4-1.2-1.2-0.4
Latency to leave start box in cocaine runway, F1.31.62.4-1.6-1.6-0.1
Latency to leave start box in cocaine runway, M0.10.10.10.40.4-0.3
Std. dev. time between licks in bursts1.01.93.21.11.1-1.8
Total sessions with >9 infusions1.62.02.91.71.70.6
Short access day 1 total inactive lever presses1.12.13.01.71.7-0.7
Short access day 10 total inactive lever presses0.10.60.90.90.90.2
Short access day 1 total infusions0.30.60.90.90.9-0.1
Short access day 10 total infusions0.30.40.60.60.6-0.8
Short access total infusions0.71.01.41.21.2-0.5
Short access day 1 locomotion0.61.01.31.21.2-0.6
Short access day 10 total locomotion0.31.33.8-0.3-0.32.0
Short access total locomotion0.40.61.70.20.21.3
One hour access (0.3 mA shock)6.47.68.52.92.9-2.5
Compulsive drug intake1.31.92.81.21.3-1.7
One hour access (shock baseline)0.30.71.01.01.0-0.1
Social response proportion1.21.64.40.30.42.1
Social responses3.74.87.22.72.70.2
Social time0.50.81.50.70.71.2
Soleus weight2.16.110.91.92.03.3
Bone: stiffness0.00.10.10.10.10.4
Tibialis anterior weight0.20.70.90.80.8-0.9
Time to tail flick, vehicle, before self-admin0.10.10.20.30.4-0.0
Time to tail flick, vehicle, after self-admin0.20.30.7-0.3-0.2-0.9
Time to tail flick, test, before self-admin0.91.01.9-0.8-0.81.4
Time to tail flick, test, after self-admin0.80.91.11.01.0-0.6
Delta time to tail flick, vehicle, before/after SA0.50.51.30.40.4-1.1
Delta time to tail flick, test, before/after SA0.40.50.60.80.8-0.6
Tibia length0.82.15.30.70.72.3
Ambulatory time before self-admin1.13.34.8-1.6-1.62.2
Ambulatory time after self-admin0.71.12.1-0.8-0.71.5
Bone: tissue strength0.10.10.2-0.2-0.2-0.5
Total heroin consumption2.73.14.82.22.10.1
Bone: trabecular number0.81.41.91.41.4-0.8
Bone: trabecular spacing0.10.10.1-0.3-0.3-0.3
Bone: trabecular thickness4.25.88.82.93.00.0
Bone: trabecular tissue density0.40.60.9-0.9-0.90.4
Water consumed over 24 hours0.30.51.6-0.00.01.3
Number of responses in last shaping day0.10.20.30.50.40.1