Tdrd1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 pVTA gene expression Tdrd1 0.06 0.04 4.7e-04 0.05 0.05 0.04 0.04 9.0e-05 1.4e-04 4.5e-04 2.8e-04
2 NAcc gene expression Tdrd1 0.08 0.06 2.5e-06 0.04 0.04 0.03 0.03 2.8e-06 6.7e-07 1.3e-05 7.3e-06
3 BLA gene expression Tdrd1 0.24 0.13 2.5e-04 0.07 0.05 0.03 0.04 8.8e-05 9.4e-04 1.8e-02 2.4e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density2.23.74.62.12.01.7
Area under the delay curve0.91.01.40.91.20.9
BMI with tail1.13.77.12.72.00.0
BMI without tail0.31.01.81.31.00.0
Body weight1.67.013.93.72.70.0
Weight adjusted by age0.00.00.00.2-0.10.0
Bone surface0.81.51.91.11.41.1
Bone volume1.52.73.21.81.71.4
Breakpoint value in progressive ratio session0.60.71.10.71.00.7
Number of licking bursts1.01.72.31.31.11.5
Context. condit. distance diff. score0.40.50.6-0.8-0.5-0.8
Locomotion velocity, session 10.30.30.6-0.3-0.4-0.8
Locomotion distance, session 11.82.32.6-1.5-1.6-1.5
Locomotion velocity, session 23.13.64.6-1.7-2.1-1.8
Locomotion distance, session 21.11.62.0-1.1-1.4-1.2
Locomotion velocity, session 32.62.94.1-1.3-1.8-2.0
Locomotion distance, session 33.53.84.7-1.8-2.2-1.9
Stereotopy head waving bouts, day 30.00.00.00.1-0.1-0.1
Stereotopy head waving duration, day 30.30.40.50.70.60.5
Locomotion velocity, session 70.30.40.60.40.50.8
Locomotion distance, session 70.10.10.3-0.4-0.00.6
Stereotopy head waving bouts, day 70.10.10.20.20.2-0.5
Stereotopy head waving duration, day 70.40.50.91.00.80.0
Locomotion velocity, session 80.50.50.8-0.8-0.5-0.9
Locomotion distance, session 81.72.42.8-1.7-1.6-1.4
Degree of sensitization distance3.13.24.11.32.02.0
Degree of sensitization stereotypy0.20.20.40.60.60.1
Conditioned locomotion0.20.20.4-0.6-0.5-0.1
Cocaine response after cond. corrected4.55.46.2-2.5-2.2-2.3
Cocaine response after cond. not corrected3.13.73.9-2.0-1.8-2.0
Cocaine response before conditioning1.72.12.51.61.11.6
Saline control response0.91.21.7-1.2-1.3-0.5
Bone: connectivity density0.81.21.61.01.30.9
Bone: cortical apparent density5.16.98.8-2.8-3.0-2.0
Bone: cortical area2.43.74.72.21.42.1
Bone: cortical porosity0.30.30.60.40.20.8
Bone: cortical porosity1.11.21.91.00.91.4
Bone: cortical thickness0.50.91.51.00.11.2
Bone: cortical thickness0.10.10.20.1-0.50.4
Bone: cortical tissue density5.17.08.7-2.8-3.0-2.1
Condit. Reinf. active minus inactive responses0.40.51.3-0.3-1.1-0.3
Condit. Reinf. active-inactive response ratio0.10.10.4-0.0-0.6-0.0
Condit. Reinf. active responses0.10.20.30.3-0.60.2
Condit. Reinf. inactive responses0.40.50.80.90.30.9
Incentive salience index mean0.70.92.1-0.7-1.4-0.3
Condit. Reinf. lever presses0.30.51.0-0.5-1.00.3
Condit. Reinf. active minus inactive responses2.73.54.32.11.71.8
Condit. Reinf. active-inactive response ratio1.11.31.71.21.30.9
Condit. Reinf. active responses4.36.07.82.61.92.8
Condit. Reinf. inactive responses2.22.84.61.71.02.1
Condit. Reinf. lever presses0.91.31.41.11.11.2
Condit. Reinf. lever reinforcers received2.94.15.32.11.62.3
Conditioned reinforcement - actives1.42.42.7-1.6-1.6-1.5
Conditioned reinforcement - inactives0.10.10.3-0.0-0.10.5
Conditioned locomotion3.54.64.8-2.2-2.2-2.0
Patch foraging indifference point 0 sec0.61.21.91.41.30.0
Patch foraging indifference point AUC0.50.81.60.81.30.0
Delay disc. indifference point, 0s delay0.00.00.1-0.30.00.3
Delay disc. indifference point, 16s delay0.80.91.30.91.20.8
Delay disc. indifference point, 2s delay0.00.00.1-0.30.20.1
Delay disc. indifference point, 24s delay3.54.04.81.91.82.2
Delay disc. indifference point, 4s delay0.20.20.30.30.50.6
Delay disc. indifference point, 8s delay0.80.91.31.11.10.6
Indifference point function ln k0.10.20.5-0.2-0.70.0
Indifference point function log k0.10.20.5-0.2-0.70.0
Patch foraging total patch changes 0 sec0.81.52.41.51.50.0
Patch foraging total patch changes 12 sec1.21.63.11.31.80.0
Patch foraging total patch changes 18 sec1.82.84.61.92.20.0
Patch foraging total patch changes 24 sec1.42.44.41.72.10.0
Patch foraging total patch changes 6 sec1.31.93.11.81.60.0
Patch foraging time to switch 0 sec0.30.51.1-1.0-0.70.0
Patch foraging water rate 0 sec0.20.51.21.10.60.0
Patch foraging water rate 12 sec1.53.15.62.41.90.0
Patch foraging water rate 18 sec0.10.10.3-0.1-0.50.0
Patch foraging water rate 24 sec0.00.00.1-0.1-0.30.0
Patch foraging water rate 6 sec0.00.00.0-0.1-0.20.0
Seeking ratio, delayed vs. immediate footshock1.31.51.6-1.2-1.3-1.2
Distance traveled before self-admin2.43.24.4-1.9-2.1-1.2
Distance traveled after self-admin3.34.05.3-2.1-2.3-1.5
Extensor digitorum longus weight0.41.73.01.51.70.0
Bone: elastic displacement0.10.10.10.40.20.2
Bone: elastic work0.60.81.2-0.7-1.1-0.8
Bone: endosteal estimation0.51.11.71.11.30.6
Bone: endosteal perimeter0.61.21.81.31.10.9
Epididymis fat weight4.013.825.25.04.00.0
Delta time in closed arm before/after self-admin1.00.91.5-1.0-1.2-0.3
Delta time in open arm before/after self-admin1.21.21.91.21.40.4
Diff in mean of infusions in LGA sessions0.30.40.80.20.9-0.5
Delay discount exponential model param1.01.11.4-0.9-1.2-1.0
Extinction: sum of active levers before priming0.30.30.70.30.80.3
Active lever presses in extinction session 60.10.10.2-0.1-0.40.0
Bone: final force0.10.20.40.40.20.6
Bone: final moment0.20.30.50.50.40.7
Food consumed during 24 hour testing period0.20.20.6-0.2-0.80.3
Glucose0.10.20.40.60.30.0
Heart weight0.81.22.11.51.20.0
Delay discount hyperbolic model param0.60.70.9-0.7-1.0-0.8
Intermittent access intake day 1-15 change0.20.40.9-0.6-0.9-0.0
Intermittent access intake escalation0.10.10.3-0.2-0.60.1
Intermittent access intake escalation 20.70.81.2-0.9-1.1-0.6
Intermitt. access day 1 inactive lever presses1.14.14.22.02.02.1
Intermitt. access day 15 inactive lever presses0.30.51.40.30.31.2
Intermitt. access escalation Index0.10.10.2-0.4-0.3-0.4
Intermittent access day 1 total infusions0.20.30.6-0.7-0.6-0.3
Intermittent access day 15 total infusions0.20.40.6-0.7-0.7-0.2
Intermittent access terminal intake (last 3 days)0.30.40.8-0.9-0.6-0.4
Intermittent access total infusions0.20.30.5-0.6-0.7-0.2
Intermittent access day 1 locomotion0.60.81.4-1.2-0.9-0.4
Intermittent access day 15 total locomotion0.20.40.70.50.60.9
Intermittent access total locomotion0.91.01.4-1.2-1.2-0.7
Intermittent access standard deviation0.20.40.50.60.70.6
Left kidney weight0.10.40.6-0.7-0.80.0
Right kidney weight0.10.61.4-0.7-1.20.0
Cocaine induced anxiety1.62.33.5-1.9-1.3-1.3
Post-drug Anxiety0.10.10.10.20.30.4
Baseline Anxiety3.74.35.92.41.72.0
Tail length0.00.10.20.40.20.0
Length with tail0.31.12.51.60.90.0
Length without tail1.23.88.32.91.80.0
Times rat made contact with spout0.30.30.7-0.5-0.80.3
Lifetime Intake0.40.50.8-0.7-0.9-0.5
Liver weight, left0.81.32.51.61.20.0
Liver weight, right0.10.20.6-0.4-0.70.0
Locomotor activity0.10.20.6-0.1-0.80.0
Locomotor testing distance0.71.32.8-1.0-1.70.0
Locomotor testing rearing0.30.61.4-0.5-1.20.0
Locomotion in novel chamber2.43.04.4-1.8-2.1-1.2
Locomotion in novel chamber post-restriction1.62.63.3-1.6-1.8-1.4
Fecal boli incidents, locomotor time 10.60.91.61.00.41.3
Change in fecal boli incidents, locomotor task0.30.30.4-0.4-0.5-0.6
Time >=10cm from walls, locomotor time 10.20.20.4-0.2-0.2-0.6
Bouts of movement, locomotor time 11.21.42.51.01.60.8
Total resting periods, locomotor time 10.60.71.40.71.20.5
Rest time, locomotor task time 10.40.51.0-1.0-0.6-0.4
Distance moved, locomotor task time 10.20.20.50.70.30.4
Vertical activity count, locomotor time 10.10.20.3-0.1-0.6-0.4
Time >=10cm from walls, locomotor time 20.50.80.90.90.80.9
Bouts of movement, locomotor time 20.50.91.3-1.10.3-1.2
Total resting periods, locomotor time 20.50.91.5-1.00.4-1.2
Rest time, locomotor task time 20.20.20.3-0.5-0.3-0.5
Distance moved, locomotor task time 20.50.60.60.70.70.8
Vertical activity count, locomotor time 20.40.60.80.90.30.9
Light reinforcement 10.20.51.1-1.1-0.50.0
Light reinforcement 20.71.12.2-1.5-1.00.0
Bone: marrow area0.51.11.71.11.30.6
Bone: maximum diameter3.05.67.22.71.92.4
Bone: maximum force0.10.10.20.40.10.5
Bone: maximum moment0.10.20.40.50.30.6
Mean time between licks in bursts0.20.40.70.80.50.6
Mean num. licks in bursts1.93.03.7-1.7-1.9-1.5
Cd content in liver3.23.54.3-2.0-2.1-1.5
Co content in liver0.50.61.1-1.0-0.8-0.3
Cu content in liver0.30.30.4-0.6-0.50.5
Fe content in liver2.53.03.71.91.71.6
K content in liver0.00.00.1-0.30.1-0.1
Mg content in liver0.10.10.1-0.30.2-0.3
Mn content in liver0.20.20.4-0.40.0-0.6
Na content in liver0.10.10.40.10.60.1
Rb content in liver0.50.50.80.40.80.9
Se content in liver0.10.10.30.10.3-0.5
Sr content in liver3.22.83.7-1.9-1.3-1.7
Zn content in liver0.70.71.5-1.2-0.7-0.5
Bone: minimum diameter1.93.53.71.91.81.9
Time in familiar zone, hab. session 10.10.10.3-0.3-0.50.0
Time in novel zone, hab. session 11.01.01.31.11.10.6
Total zone transitions, hab. session 10.40.50.7-0.5-0.8-0.8
Total locomotion distance, hab. session 10.20.30.4-0.2-0.5-0.7
Locomotion velocity, hab. session 10.30.40.6-0.5-0.7-0.7
Time in familiar zone, hab. session 23.84.05.51.91.72.3
Time in novel zone, hab. session 23.23.34.1-1.6-1.7-2.0
Total zone transitions, hab. session 20.20.20.3-0.3-0.6-0.5
Total locomotion distance, hab. session 20.40.50.6-0.5-0.8-0.8
Locomotion velocity, hab. session 20.40.50.6-0.6-0.8-0.8
Novel to familiar place preference ratio0.50.50.80.90.70.5
Novelty place preference0.30.40.70.80.60.3
Time in novel zone, NPP test1.01.11.71.31.00.8
Total zone transitions, NPP test0.20.20.5-0.2-0.5-0.7
Total locomotion distance, NPP test0.20.30.4-0.3-0.6-0.6
Locomotion velocity, NPP test0.71.01.3-0.9-1.0-1.1
Intraocular pressure0.81.22.61.61.00.0
Delta distance traveled before/after self-admin0.30.30.5-0.6-0.4-0.7
Delta ambulatory time before/after self-admin0.10.10.20.20.4-0.2
Parametrial fat weight4.610.817.24.23.90.0
Pavlov. Cond. lever latency0.30.30.70.50.80.3
Pavlov. Cond. magazine entry latency0.20.20.4-0.1-0.60.6
Pavlov. Cond. change in total contacts0.00.00.1-0.2-0.30.0
Pavlov. Cond. index score0.10.10.4-0.1-0.60.1
Pavlov. Cond. latency score0.10.10.4-0.2-0.6-0.0
Pavlov. Cond. lever contacts0.00.10.1-0.2-0.4-0.0
Pavlov. Cond. magazine entry number0.20.30.60.00.8-0.5
Pavlov. Cond. intertrial magazine entries0.10.10.3-0.2-0.5-0.2
Pavlov. Cond. lever-magazine prob. diff.0.10.10.20.0-0.40.4
Pavlov. Cond. response bias0.30.30.7-0.3-0.80.4
Pavlov. Cond. lever latency0.91.21.4-1.2-1.1-1.1
Pavlov. Cond. magazine entry latency0.60.81.21.10.90.5
Pavlov. Cond. change in total contacts0.91.51.81.30.91.3
Pavlov. Cond. index score0.81.11.51.20.91.0
Pavlov. Cond. latency score0.91.11.51.20.91.0
Pavlov. Cond. lever contacts0.30.40.50.70.60.6
Pavlov. Cond. magazine entry number0.40.50.9-0.9-0.7-0.4
Pavlov. Cond. intertrial magazine entries0.30.41.20.20.21.1
Pavlov. Cond. lever-magazine prob. diff.0.50.71.11.00.70.8
Pavlov. Cond. response bias0.71.01.41.20.90.7
Time in closed arm before self-admin0.00.00.10.00.2-0.1
Time in closed arm after self-admin0.90.91.5-1.2-1.0-0.6
Time in open arm before self-admin0.00.00.1-0.2-0.20.1
Time in open arm after self-admin0.30.40.50.70.70.4
Bone: periosteal estimation1.22.63.31.81.51.6
Bone: periosteal perimeter2.13.74.52.11.52.1
Bone: post-yield work0.60.81.80.60.61.3
Progressive ratio test 1 active lever presses0.50.70.9-0.9-0.9-0.6
Progressive ratio test 1 breakpoint0.60.71.0-0.9-1.0-0.7
Progressive ratio test 1 inactive lever presses0.00.10.10.0-0.30.3
Progressive ratio test 2 active lever presses0.10.20.2-0.4-0.4-0.3
Progressive ratio test 2 breakpoint0.10.10.2-0.3-0.4-0.3
Progressive ratio test 2 inactive lever presses0.50.92.20.50.41.5
Incentive Sensitization - Responses0.20.30.40.50.40.6
Incentive Sensitization - Breakpoint0.20.30.40.60.50.6
Sum of active levers in priming session hrs 5-60.20.10.20.00.4-0.5
Progressive ratio0.10.10.3-0.0-0.1-0.6
Food seeking constrained by brief footshock0.70.91.21.11.00.6
Seeking ratio, punishment vs. effort0.00.10.10.10.20.3
Retroperitoneal fat weight4.217.930.95.64.80.0
Reaction time number correct0.51.11.81.41.20.0
Reaction time mean minus median0.10.30.6-0.5-0.70.0
Reaction time mean minus median AUC0.41.11.7-1.3-1.30.0
Reaction time num false alarms0.00.00.1-0.30.10.0
Reaction time num false alarms AUC0.10.10.3-0.5-0.20.0
Reaction time trials correct on left0.51.11.81.41.20.0
Reaction time trials on left0.61.11.91.41.20.0
Reaction time mean0.20.40.8-0.6-0.90.0
Reaction time mean AUC0.20.30.6-0.6-0.80.0
Median of all reaction times0.30.40.8-0.7-0.90.0
Reaction time omissions0.20.30.70.50.80.0
Reaction time false alarm rate0.20.30.7-0.8-0.50.0
Reaction time premature initiation rate1.11.52.4-1.5-1.60.0
Reaction time premature initiations0.30.61.0-0.8-1.00.0
Std. dev. reaction times0.10.10.3-0.2-0.60.0
Reaction time trials completed0.61.11.91.41.20.0
Reaction time trials AUC0.61.11.91.41.10.0
Run reversals in cocaine runway, females0.40.40.6-0.5-0.8-0.5
Run reversals in cocaine runway, males0.20.20.30.10.40.5
Latency to leave start box in cocaine runway0.20.30.5-0.6-0.1-0.7
Latency to leave start box in cocaine runway, F0.10.10.2-0.4-0.1-0.4
Latency to leave start box in cocaine runway, M0.10.10.3-0.20.2-0.5
Std. dev. time between licks in bursts0.10.20.30.40.5-0.3
Total sessions with >9 infusions0.60.71.0-0.4-0.9-1.0
Short access day 1 total inactive lever presses0.50.61.20.90.11.1
Short access day 10 total inactive lever presses0.00.10.10.2-0.00.4
Short access day 1 total infusions0.81.11.6-0.7-1.1-1.3
Short access day 10 total infusions1.72.22.6-1.4-1.5-1.6
Short access total infusions1.72.12.6-1.3-1.6-1.5
Short access day 1 locomotion0.50.60.9-0.7-0.7-1.0
Short access day 10 total locomotion0.10.10.2-0.5-0.40.2
Short access total locomotion1.11.31.4-1.2-1.1-1.2
One hour access (0.3 mA shock)0.50.50.80.70.60.9
Compulsive drug intake1.21.41.71.21.01.3
One hour access (shock baseline)0.30.50.6-0.7-0.8-0.6
Social response proportion1.21.42.5-1.3-1.60.0
Social responses0.20.30.60.80.40.0
Social time0.20.30.5-0.5-0.70.0
Soleus weight0.00.00.1-0.2-0.20.0
Bone: stiffness0.00.00.10.2-0.10.2
Tibialis anterior weight0.51.63.21.21.80.0
Time to tail flick, vehicle, before self-admin0.30.40.60.60.10.8
Time to tail flick, vehicle, after self-admin0.30.41.20.20.41.1
Time to tail flick, test, before self-admin7.37.611.0-2.4-2.4-3.3
Time to tail flick, test, after self-admin0.30.40.40.50.70.6
Delta time to tail flick, vehicle, before/after SA0.80.71.10.51.00.9
Delta time to tail flick, test, before/after SA2.62.64.31.41.32.1
Tibia length0.10.20.5-0.4-0.70.0
Ambulatory time before self-admin1.82.63.7-1.7-1.9-1.2
Ambulatory time after self-admin2.63.03.5-1.8-1.9-1.5
Bone: tissue strength0.10.10.10.20.40.2
Total heroin consumption0.60.71.11.01.00.3
Bone: trabecular number2.44.04.31.92.12.0
Bone: trabecular spacing0.10.10.30.2-0.00.5
Bone: trabecular thickness2.43.04.32.11.81.3
Bone: trabecular tissue density0.81.21.7-0.9-1.3-1.0
Water consumed over 24 hours0.30.40.9-0.6-0.90.1
Number of responses in last shaping day0.70.70.8-0.9-0.9-0.8