Tbc1d31

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 pVTA gene expression Tbc1d31 0.03 0.04 5.2e-03 0.03 0.03 0.03 0.03 2.5e-03 2.7e-03 1.8e-03 2.3e-03
2 Adipose mRNA stability Tbc1d31 0.02 0.03 2.4e-03 0.01 0.01 0.01 0.01 7.0e-03 8.0e-03 2.7e-02 2.1e-02
3 pVTA intron excision ratio chr7_91345587_91349257 0.44 0.2 4.2e-03 0.03 0.03 0.03 0.02 3.2e-03 3.2e-03 1.7e-03 6.6e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density1.32.23.41.81.5-0.9
Area under the delay curve0.40.41.20.10.11.1
BMI with tail4.314.917.04.13.8-3.7
BMI without tail2.36.98.32.62.4-2.9
Body weight5.122.327.74.54.4-5.3
Weight adjusted by age2.23.34.21.92.1-1.5
Bone surface0.10.10.20.20.4-0.3
Bone volume0.10.10.20.30.4-0.0
Breakpoint value in progressive ratio session0.91.11.7-1.2-1.3-0.4
Number of licking bursts1.11.72.7-1.3-1.60.9
Context. condit. distance diff. score0.20.30.50.50.7-0.1
Locomotion velocity, session 10.10.10.4-0.20.20.6
Locomotion distance, session 10.10.10.20.40.30.2
Locomotion velocity, session 21.01.21.81.00.9-1.4
Locomotion distance, session 20.20.20.70.1-0.2-0.8
Locomotion velocity, session 30.20.20.6-0.3-0.20.8
Locomotion distance, session 30.20.20.5-0.3-0.70.3
Stereotopy head waving bouts, day 31.11.32.20.91.5-0.9
Stereotopy head waving duration, day 30.20.20.70.20.8-0.0
Locomotion velocity, session 71.71.82.3-1.5-1.31.2
Locomotion distance, session 74.15.17.4-2.7-2.61.2
Stereotopy head waving bouts, day 70.40.50.50.60.7-0.7
Stereotopy head waving duration, day 70.10.10.10.30.3-0.4
Locomotion velocity, session 81.11.32.21.51.3-0.5
Locomotion distance, session 80.00.10.10.30.10.3
Degree of sensitization distance1.71.82.8-1.7-1.40.7
Degree of sensitization stereotypy0.00.00.0-0.0-0.1-0.1
Conditioned locomotion2.12.43.3-1.8-1.71.0
Cocaine response after cond. corrected0.50.61.20.70.3-1.1
Cocaine response after cond. not corrected0.91.11.31.20.8-1.2
Cocaine response before conditioning1.01.21.91.11.4-0.6
Saline control response0.00.00.1-0.0-0.20.3
Bone: connectivity density0.81.31.61.20.9-1.3
Bone: cortical apparent density2.94.05.2-2.2-1.52.3
Bone: cortical area0.20.30.4-0.6-0.50.5
Bone: cortical porosity0.50.61.30.71.10.1
Bone: cortical porosity0.40.41.10.41.00.2
Bone: cortical thickness0.00.10.20.30.40.0
Bone: cortical thickness0.30.30.8-0.1-0.3-0.9
Bone: cortical tissue density3.04.15.1-2.2-1.52.3
Condit. Reinf. active minus inactive responses0.50.61.50.0-0.5-1.2
Condit. Reinf. active-inactive response ratio0.90.92.2-0.2-0.7-1.5
Condit. Reinf. active responses0.20.30.60.40.2-0.8
Condit. Reinf. inactive responses0.60.71.30.81.10.4
Incentive salience index mean0.60.82.20.2-0.2-1.5
Condit. Reinf. lever presses0.50.72.10.30.3-1.4
Condit. Reinf. active minus inactive responses1.11.42.21.51.40.1
Condit. Reinf. active-inactive response ratio0.80.92.40.40.51.5
Condit. Reinf. active responses1.62.23.51.91.7-0.4
Condit. Reinf. inactive responses0.81.01.61.00.7-1.3
Condit. Reinf. lever presses1.82.53.92.01.7-0.9
Condit. Reinf. lever reinforcers received1.21.72.91.71.5-0.2
Conditioned reinforcement - actives0.20.30.70.50.3-0.8
Conditioned reinforcement - inactives0.50.81.3-1.2-1.0-0.3
Conditioned locomotion0.20.20.40.40.30.6
Patch foraging indifference point 0 sec0.91.73.81.10.3-1.9
Patch foraging indifference point AUC0.20.20.50.40.2-0.7
Delay disc. indifference point, 0s delay0.70.81.90.10.71.4
Delay disc. indifference point, 16s delay1.92.13.9-1.1-1.12.0
Delay disc. indifference point, 2s delay1.41.62.31.51.50.4
Delay disc. indifference point, 24s delay0.00.00.1-0.0-0.40.1
Delay disc. indifference point, 4s delay0.80.91.31.10.8-0.8
Delay disc. indifference point, 8s delay0.40.50.8-0.5-0.50.9
Indifference point function ln k0.50.91.41.21.1-0.3
Indifference point function log k0.50.91.41.21.1-0.3
Patch foraging total patch changes 0 sec0.51.02.40.80.1-1.6
Patch foraging total patch changes 12 sec0.20.20.5-0.3-0.7-0.1
Patch foraging total patch changes 18 sec0.20.30.70.40.1-0.9
Patch foraging total patch changes 24 sec0.50.90.9-0.9-1.0-0.9
Patch foraging total patch changes 6 sec0.30.50.90.0-0.9-0.8
Patch foraging time to switch 0 sec0.81.62.2-1.4-0.81.5
Patch foraging water rate 0 sec1.63.34.62.11.2-1.9
Patch foraging water rate 12 sec0.20.30.70.80.5-0.2
Patch foraging water rate 18 sec0.71.01.61.11.3-0.3
Patch foraging water rate 24 sec0.50.81.61.30.80.1
Patch foraging water rate 6 sec1.72.53.31.81.6-1.3
Seeking ratio, delayed vs. immediate footshock0.30.30.5-0.6-0.30.7
Distance traveled before self-admin0.10.10.20.2-0.30.4
Distance traveled after self-admin0.60.71.60.60.31.3
Extensor digitorum longus weight4.316.717.44.23.9-4.2
Bone: elastic displacement0.91.11.91.11.40.5
Bone: elastic work1.11.42.51.31.60.2
Bone: endosteal estimation0.71.52.3-1.3-1.50.6
Bone: endosteal perimeter1.02.12.8-1.7-1.41.2
Epididymis fat weight0.00.10.2-0.10.1-0.4
Delta time in closed arm before/after self-admin0.90.82.3-0.2-0.41.5
Delta time in open arm before/after self-admin0.00.00.0-0.1-0.0-0.2
Diff in mean of infusions in LGA sessions0.70.81.90.60.4-1.4
Delay discount exponential model param0.20.30.7-0.1-0.0-0.9
Extinction: sum of active levers before priming2.73.04.0-1.9-2.0-1.2
Active lever presses in extinction session 60.40.40.7-0.7-0.9-0.2
Bone: final force1.01.62.01.21.4-1.0
Bone: final moment0.71.11.41.01.2-0.9
Food consumed during 24 hour testing period0.20.20.3-0.5-0.6-0.4
Glucose3.45.35.8-2.2-2.32.4
Heart weight0.50.81.70.60.5-1.3
Delay discount hyperbolic model param0.20.20.5-0.4-0.3-0.7
Intermittent access intake day 1-15 change0.71.52.6-1.6-1.30.4
Intermittent access intake escalation0.51.01.8-1.4-1.10.2
Intermittent access intake escalation 20.50.60.9-0.8-0.9-0.4
Intermitt. access day 1 inactive lever presses0.00.00.10.30.0-0.1
Intermitt. access day 15 inactive lever presses0.20.41.00.51.0-0.1
Intermitt. access escalation Index0.81.22.50.80.6-1.6
Intermittent access day 1 total infusions1.01.62.0-1.4-1.01.4
Intermittent access day 15 total infusions2.13.24.8-2.2-1.71.4
Intermittent access terminal intake (last 3 days)3.64.77.2-2.7-2.31.2
Intermittent access total infusions2.73.24.8-2.2-1.81.3
Intermittent access day 1 locomotion0.10.10.1-0.3-0.0-0.4
Intermittent access day 15 total locomotion0.30.51.3-1.1-0.40.1
Intermittent access total locomotion0.30.30.7-0.8-0.4-0.3
Intermittent access standard deviation0.81.72.6-1.6-1.6-0.0
Left kidney weight1.67.28.82.73.0-2.3
Right kidney weight1.46.37.82.82.7-2.0
Cocaine induced anxiety3.24.66.4-2.1-2.51.7
Post-drug Anxiety2.72.94.3-1.6-2.11.4
Baseline Anxiety0.40.40.80.70.9-0.0
Tail length0.10.20.70.10.2-0.8
Length with tail1.04.48.21.51.7-2.9
Length without tail2.06.38.52.22.3-2.9
Times rat made contact with spout2.42.83.8-1.7-1.32.0
Lifetime Intake1.92.33.7-1.9-1.60.8
Liver weight, left1.11.93.80.91.1-1.9
Liver weight, right2.54.34.42.12.0-2.1
Locomotor activity2.43.84.92.22.2-1.3
Locomotor testing distance1.12.13.71.51.9-0.4
Locomotor testing rearing0.40.91.21.11.0-0.6
Locomotion in novel chamber1.62.02.91.61.7-0.7
Locomotion in novel chamber post-restriction0.30.41.20.4-0.1-1.1
Fecal boli incidents, locomotor time 11.52.22.8-1.7-1.71.1
Change in fecal boli incidents, locomotor task0.60.61.70.3-0.1-1.3
Time >=10cm from walls, locomotor time 10.50.51.2-0.5-0.0-1.1
Bouts of movement, locomotor time 12.52.84.4-2.1-1.90.6
Total resting periods, locomotor time 12.22.53.8-1.9-1.90.0
Rest time, locomotor task time 14.15.16.0-2.2-2.52.0
Distance moved, locomotor task time 11.01.52.10.91.3-1.5
Vertical activity count, locomotor time 11.23.03.81.52.0-1.7
Time >=10cm from walls, locomotor time 20.20.20.4-0.6-0.50.3
Bouts of movement, locomotor time 20.60.91.9-1.4-0.60.6
Total resting periods, locomotor time 20.50.91.8-1.3-0.50.7
Rest time, locomotor task time 20.91.21.9-1.2-1.40.6
Distance moved, locomotor task time 20.91.12.10.80.8-1.4
Vertical activity count, locomotor time 20.91.22.00.81.0-1.4
Light reinforcement 10.10.20.2-0.50.20.5
Light reinforcement 20.30.51.1-1.1-0.4-0.1
Bone: marrow area0.61.42.3-1.3-1.50.5
Bone: maximum diameter1.83.44.3-2.1-1.91.5
Bone: maximum force0.50.81.21.01.1-0.5
Bone: maximum moment0.30.50.80.80.9-0.3
Mean time between licks in bursts0.71.73.3-1.4-0.11.8
Mean num. licks in bursts0.10.20.40.10.70.2
Cd content in liver0.60.61.00.41.0-0.8
Co content in liver0.00.00.00.10.10.1
Cu content in liver0.60.71.20.91.10.3
Fe content in liver0.20.30.60.50.80.3
K content in liver1.31.33.80.10.31.9
Mg content in liver0.30.31.0-0.0-0.01.0
Mn content in liver0.60.61.9-0.10.21.4
Na content in liver0.00.00.10.1-0.1-0.3
Rb content in liver0.70.81.8-0.8-1.3-0.2
Se content in liver2.42.94.62.21.6-1.1
Sr content in liver1.11.01.20.91.1-1.0
Zn content in liver1.01.11.71.31.20.2
Bone: minimum diameter1.32.42.9-1.7-1.41.5
Time in familiar zone, hab. session 10.40.40.8-0.9-0.10.5
Time in novel zone, hab. session 10.50.51.1-0.4-1.00.4
Total zone transitions, hab. session 12.63.64.42.11.8-1.8
Total locomotion distance, hab. session 12.02.83.71.91.9-1.1
Locomotion velocity, hab. session 11.21.72.61.61.5-0.6
Time in familiar zone, hab. session 22.32.43.1-1.8-1.61.2
Time in novel zone, hab. session 20.50.50.91.00.6-0.2
Total zone transitions, hab. session 20.50.71.41.20.8-0.0
Total locomotion distance, hab. session 20.40.61.11.00.60.5
Locomotion velocity, hab. session 20.30.40.80.90.50.3
Novel to familiar place preference ratio1.51.71.91.41.3-1.2
Novelty place preference1.51.62.21.51.4-0.9
Time in novel zone, NPP test1.31.41.81.41.2-0.9
Total zone transitions, NPP test0.71.02.01.40.8-0.6
Total locomotion distance, NPP test0.50.71.51.20.70.2
Locomotion velocity, NPP test0.50.71.31.10.80.4
Intraocular pressure0.71.02.1-0.1-0.9-1.4
Delta distance traveled before/after self-admin0.20.20.30.30.30.6
Delta ambulatory time before/after self-admin0.10.20.20.50.40.4
Parametrial fat weight0.51.32.01.21.4-0.8
Pavlov. Cond. lever latency1.01.31.91.31.40.2
Pavlov. Cond. magazine entry latency0.81.01.6-1.2-1.3-0.2
Pavlov. Cond. change in total contacts1.01.11.6-1.3-1.20.3
Pavlov. Cond. index score1.72.13.5-1.9-1.60.3
Pavlov. Cond. latency score1.82.33.4-1.9-1.80.2
Pavlov. Cond. lever contacts0.91.11.6-1.3-1.3-0.2
Pavlov. Cond. magazine entry number0.91.11.81.31.3-0.1
Pavlov. Cond. intertrial magazine entries2.83.34.72.21.9-1.4
Pavlov. Cond. lever-magazine prob. diff.1.51.83.2-1.8-1.50.2
Pavlov. Cond. response bias0.70.91.5-1.2-1.10.1
Pavlov. Cond. lever latency0.30.40.7-0.8-0.60.4
Pavlov. Cond. magazine entry latency0.40.51.10.10.6-1.0
Pavlov. Cond. change in total contacts0.91.51.61.21.2-1.2
Pavlov. Cond. index score0.50.71.40.60.6-1.2
Pavlov. Cond. latency score0.81.11.70.90.9-1.3
Pavlov. Cond. lever contacts0.10.20.30.60.4-0.1
Pavlov. Cond. magazine entry number0.91.12.4-0.6-0.71.6
Pavlov. Cond. intertrial magazine entries1.01.63.6-0.5-0.91.9
Pavlov. Cond. lever-magazine prob. diff.0.60.81.80.60.6-1.4
Pavlov. Cond. response bias0.10.10.10.30.3-0.3
Time in closed arm before self-admin0.10.20.50.20.20.7
Time in closed arm after self-admin2.83.06.5-0.9-1.32.5
Time in open arm before self-admin2.32.53.21.61.2-1.8
Time in open arm after self-admin1.01.11.41.21.1-0.8
Bone: periosteal estimation0.92.02.5-1.6-1.61.0
Bone: periosteal perimeter1.73.03.8-2.0-1.91.3
Bone: post-yield work0.30.40.6-0.7-0.8-0.5
Progressive ratio test 1 active lever presses0.91.11.8-1.3-1.10.6
Progressive ratio test 1 breakpoint1.11.42.0-1.4-1.20.8
Progressive ratio test 1 inactive lever presses0.10.10.40.20.60.1
Progressive ratio test 2 active lever presses0.50.61.2-1.1-0.5-0.4
Progressive ratio test 2 breakpoint0.50.51.1-1.0-0.5-0.5
Progressive ratio test 2 inactive lever presses0.40.61.0-1.0-0.6-0.7
Incentive Sensitization - Responses0.50.71.90.00.5-1.4
Incentive Sensitization - Breakpoint0.50.61.8-0.20.3-1.3
Sum of active levers in priming session hrs 5-60.10.10.30.20.2-0.5
Progressive ratio0.20.30.6-0.40.3-0.8
Food seeking constrained by brief footshock1.62.05.90.40.1-2.4
Seeking ratio, punishment vs. effort0.10.20.30.3-0.4-0.6
Retroperitoneal fat weight1.35.47.62.42.8-1.6
Reaction time number correct0.20.41.00.10.41.0
Reaction time mean minus median0.41.01.3-0.8-1.0-1.1
Reaction time mean minus median AUC0.20.40.8-0.5-0.5-0.9
Reaction time num false alarms1.31.83.3-1.4-0.61.8
Reaction time num false alarms AUC1.21.83.3-1.3-0.51.8
Reaction time trials correct on left0.20.41.00.10.41.0
Reaction time trials on left0.20.41.00.10.41.0
Reaction time mean0.20.30.6-0.5-0.4-0.8
Reaction time mean AUC0.20.30.4-0.6-0.4-0.6
Median of all reaction times0.10.10.3-0.5-0.3-0.2
Reaction time omissions0.50.71.3-1.2-0.80.4
Reaction time false alarm rate0.50.71.1-1.1-0.50.9
Reaction time premature initiation rate3.24.44.92.22.1-2.0
Reaction time premature initiations1.52.63.41.81.9-1.0
Std. dev. reaction times0.30.51.4-0.10.0-1.2
Reaction time trials completed0.20.41.00.10.41.0
Reaction time trials AUC0.30.61.6-0.10.31.3
Run reversals in cocaine runway, females0.10.10.30.20.50.4
Run reversals in cocaine runway, males0.70.71.10.80.7-1.0
Latency to leave start box in cocaine runway4.75.47.4-2.5-2.71.6
Latency to leave start box in cocaine runway, F4.85.45.9-2.3-2.42.3
Latency to leave start box in cocaine runway, M1.11.11.4-1.2-1.1-0.7
Std. dev. time between licks in bursts0.40.51.40.31.20.1
Total sessions with >9 infusions0.60.71.1-1.0-0.90.5
Short access day 1 total inactive lever presses0.40.51.0-0.7-1.00.1
Short access day 10 total inactive lever presses0.00.00.0-0.1-0.20.1
Short access day 1 total infusions0.70.91.0-0.8-1.0-1.0
Short access day 10 total infusions0.60.71.3-1.2-0.80.4
Short access total infusions0.60.71.3-1.1-1.0-0.2
Short access day 1 locomotion0.00.00.10.20.20.2
Short access day 10 total locomotion0.30.50.8-0.6-0.9-0.6
Short access total locomotion0.10.10.20.30.1-0.4
One hour access (0.3 mA shock)0.10.10.2-0.5-0.2-0.0
Compulsive drug intake1.21.42.51.61.0-0.8
One hour access (shock baseline)0.71.01.9-1.4-0.80.7
Social response proportion3.64.16.42.01.4-2.5
Social responses6.48.29.93.12.8-2.7
Social time1.82.43.51.51.2-1.9
Soleus weight2.78.014.62.41.9-3.8
Bone: stiffness0.00.10.1-0.1-0.2-0.4
Tibialis anterior weight4.415.017.14.13.9-3.6
Time to tail flick, vehicle, before self-admin0.70.71.50.40.7-1.2
Time to tail flick, vehicle, after self-admin0.20.30.4-0.6-0.6-0.3
Time to tail flick, test, before self-admin0.00.00.10.10.3-0.3
Time to tail flick, test, after self-admin0.80.82.4-0.20.11.5
Delta time to tail flick, vehicle, before/after SA0.20.20.2-0.4-0.40.4
Delta time to tail flick, test, before/after SA0.20.20.30.50.30.5
Tibia length1.85.06.62.52.6-1.4
Ambulatory time before self-admin0.10.10.20.0-0.40.2
Ambulatory time after self-admin0.50.61.01.00.50.7
Bone: tissue strength0.30.30.40.60.70.1
Total heroin consumption2.22.53.4-1.8-1.81.0
Bone: trabecular number2.44.05.12.32.1-1.5
Bone: trabecular spacing1.11.42.4-1.4-1.50.0
Bone: trabecular thickness0.70.91.51.21.2-0.1
Bone: trabecular tissue density0.50.71.1-0.9-1.00.3
Water consumed over 24 hours0.30.30.7-0.5-0.8-0.3
Number of responses in last shaping day1.21.31.4-1.1-1.11.2