Sult1e1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver mRNA stability Sult1e1 0.52 0.13 0.0e+00 0.27 0.3 0.32 0.32 5.5e-30 4.8e-33 4.7e-36 3.7e-36
2 Liver intron excision ratio chr14_20713137_20714909 0.09 0.07 9.0e-08 0.07 0.06 0.08 0.07 7.2e-08 8.8e-07 8.8e-09 1.8e-08
3 Liver gene expression Sult1e1 0.55 0.09 0.0e+00 0.44 0.43 0.46 0.46 2.0e-53 2.8e-52 2.5e-57 5.2e-57
4 Liver intron excision ratio chr14_20709460_20713011 0.07 0.06 1.7e-06 0.07 0.04 0.05 0.05 8.5e-08 3.2e-05 3.2e-06 1.3e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.00.00.10.3-0.1-0.10.1
Area under the delay curve0.00.00.0-0.20.0-0.00.0
BMI with tail1.86.17.22.4-2.4-2.72.4
BMI without tail1.75.15.42.1-2.2-2.32.3
Body weight0.00.20.40.3-0.1-0.60.4
Weight adjusted by age0.91.41.71.3-1.0-1.11.3
Bone surface0.00.00.1-0.00.20.3-0.2
Bone volume0.40.70.8-0.80.80.9-0.8
Breakpoint value in progressive ratio session0.00.00.1-0.30.20.3-0.1
Number of licking bursts0.10.10.30.5-0.3-0.20.3
Context. condit. distance diff. score0.20.30.4-0.60.40.5-0.5
Locomotion velocity, session 10.91.01.01.0-1.0-1.00.9
Locomotion distance, session 10.20.20.3-0.50.40.5-0.4
Locomotion velocity, session 20.10.10.1-0.30.30.2-0.3
Locomotion distance, session 20.10.20.2-0.40.40.5-0.5
Locomotion velocity, session 30.30.30.5-0.60.50.7-0.3
Locomotion distance, session 30.00.00.0-0.1-0.00.2-0.1
Stereotopy head waving bouts, day 30.70.80.90.8-0.9-0.91.0
Stereotopy head waving duration, day 30.20.20.40.4-0.5-0.40.6
Locomotion velocity, session 72.73.03.2-1.81.71.8-1.6
Locomotion distance, session 72.63.23.9-1.81.81.7-2.0
Stereotopy head waving bouts, day 70.80.91.20.9-0.9-0.81.1
Stereotopy head waving duration, day 70.91.11.50.9-1.0-1.01.2
Locomotion velocity, session 80.00.00.0-0.1-0.1-0.10.2
Locomotion distance, session 80.81.11.3-1.10.91.1-1.1
Degree of sensitization distance2.52.62.9-1.71.71.3-1.7
Degree of sensitization stereotypy0.20.30.40.5-0.5-0.30.7
Conditioned locomotion0.50.50.60.7-0.8-0.70.6
Cocaine response after cond. corrected0.70.81.0-0.80.91.0-0.9
Cocaine response after cond. not corrected0.60.71.0-0.70.81.0-0.8
Cocaine response before conditioning0.10.20.20.5-0.4-0.30.5
Saline control response0.40.50.7-0.80.60.8-0.6
Bone: connectivity density0.20.30.60.8-0.5-0.40.5
Bone: cortical apparent density0.10.10.10.3-0.3-0.30.3
Bone: cortical area0.50.70.9-1.00.80.7-0.8
Bone: cortical porosity1.51.62.01.4-1.4-1.01.2
Bone: cortical porosity2.83.03.41.8-1.8-1.71.6
Bone: cortical thickness0.10.20.30.4-0.4-0.60.3
Bone: cortical thickness0.20.20.5-0.40.40.7-0.3
Bone: cortical tissue density0.10.10.20.3-0.4-0.40.4
Condit. Reinf. active minus inactive responses0.30.40.60.6-0.5-0.80.5
Condit. Reinf. active-inactive response ratio2.02.12.91.5-1.3-1.71.3
Condit. Reinf. active responses0.10.10.1-0.20.20.2-0.4
Condit. Reinf. inactive responses1.61.92.6-1.31.21.6-1.3
Incentive salience index mean0.00.00.00.00.1-0.2-0.1
Condit. Reinf. lever presses0.00.00.10.2-0.2-0.10.1
Condit. Reinf. active minus inactive responses0.00.00.10.0-0.00.3-0.1
Condit. Reinf. active-inactive response ratio0.10.10.2-0.20.10.5-0.3
Condit. Reinf. active responses0.10.10.2-0.20.30.5-0.4
Condit. Reinf. inactive responses0.60.80.9-0.81.00.8-0.9
Condit. Reinf. lever presses0.30.51.0-0.70.51.0-0.4
Condit. Reinf. lever reinforcers received0.10.20.3-0.30.40.6-0.5
Conditioned reinforcement - actives0.00.00.0-0.10.2-0.10.0
Conditioned reinforcement - inactives0.10.10.3-0.50.00.60.0
Conditioned locomotion0.60.81.2-0.91.10.6-0.9
Patch foraging indifference point 0 sec0.20.40.4-0.60.60.6-0.5
Patch foraging indifference point AUC3.55.15.7-2.22.32.1-2.4
Delay disc. indifference point, 0s delay0.10.10.10.3-0.3-0.20.3
Delay disc. indifference point, 16s delay0.70.81.10.6-1.0-1.00.9
Delay disc. indifference point, 2s delay4.44.95.2-2.22.32.1-2.3
Delay disc. indifference point, 24s delay0.00.00.0-0.20.2-0.1-0.2
Delay disc. indifference point, 4s delay0.10.10.1-0.30.10.40.1
Delay disc. indifference point, 8s delay0.81.01.30.9-1.0-1.11.0
Indifference point function ln k1.32.22.31.4-1.5-1.51.5
Indifference point function log k1.32.22.31.4-1.5-1.51.5
Patch foraging total patch changes 0 sec0.30.50.6-0.80.70.8-0.6
Patch foraging total patch changes 12 sec1.82.43.1-1.51.81.0-1.7
Patch foraging total patch changes 18 sec0.10.20.4-0.40.40.6-0.4
Patch foraging total patch changes 24 sec1.52.63.1-1.61.81.4-1.7
Patch foraging total patch changes 6 sec1.92.93.0-1.71.71.7-1.7
Patch foraging time to switch 0 sec3.77.67.82.8-2.8-2.72.7
Patch foraging water rate 0 sec2.34.95.4-2.22.32.0-2.3
Patch foraging water rate 12 sec0.61.21.3-1.11.11.1-1.1
Patch foraging water rate 18 sec2.64.04.3-1.92.12.0-2.0
Patch foraging water rate 24 sec1.62.23.0-1.41.41.7-1.4
Patch foraging water rate 6 sec1.52.22.6-1.61.61.3-1.5
Seeking ratio, delayed vs. immediate footshock0.20.20.8-0.30.10.9-0.2
Distance traveled before self-admin0.00.00.00.1-0.2-0.00.2
Distance traveled after self-admin3.34.06.0-1.91.92.5-1.8
Extensor digitorum longus weight10.942.846.16.8-6.5-6.76.2
Bone: elastic displacement0.30.30.40.6-0.6-0.30.6
Bone: elastic work0.40.50.90.9-0.8-0.10.8
Bone: endosteal estimation1.53.33.6-1.91.71.9-1.7
Bone: endosteal perimeter0.10.30.7-0.50.40.8-0.3
Epididymis fat weight0.00.10.2-0.0-0.1-0.40.2
Delta time in closed arm before/after self-admin1.00.91.21.1-0.8-1.10.8
Delta time in open arm before/after self-admin0.60.60.9-1.00.70.6-0.8
Diff in mean of infusions in LGA sessions0.00.10.1-0.0-0.4-0.30.1
Delay discount exponential model param0.10.10.20.4-0.3-0.20.2
Extinction: sum of active levers before priming0.10.10.30.2-0.60.00.2
Active lever presses in extinction session 61.01.01.1-1.00.91.0-1.0
Bone: final force0.20.30.3-0.60.50.5-0.5
Bone: final moment0.20.30.4-0.60.60.5-0.6
Food consumed during 24 hour testing period2.12.83.7-1.61.61.9-1.6
Glucose1.01.61.9-1.31.41.1-1.3
Heart weight0.30.51.00.5-0.5-1.00.7
Delay discount hyperbolic model param0.20.30.40.6-0.5-0.50.4
Intermittent access intake day 1-15 change0.20.40.50.7-0.5-0.70.6
Intermittent access intake escalation0.40.81.01.0-0.7-1.01.0
Intermittent access intake escalation 20.10.10.2-0.50.30.4-0.2
Intermitt. access day 1 inactive lever presses0.72.63.6-1.91.41.6-1.5
Intermitt. access day 15 inactive lever presses2.04.25.0-2.22.02.1-1.9
Intermitt. access escalation Index1.31.82.31.4-1.5-1.11.3
Intermittent access day 1 total infusions0.00.00.0-0.1-0.00.20.0
Intermittent access day 15 total infusions0.00.00.00.00.10.10.1
Intermittent access terminal intake (last 3 days)0.60.80.9-1.00.91.0-0.8
Intermittent access total infusions0.00.00.1-0.20.10.30.0
Intermittent access day 1 locomotion0.40.50.6-0.80.80.7-0.6
Intermittent access day 15 total locomotion0.40.81.3-0.91.10.5-0.9
Intermittent access total locomotion0.00.00.2-0.10.4-0.0-0.1
Intermittent access standard deviation0.30.50.8-0.90.60.9-0.4
Left kidney weight0.10.30.5-0.60.70.3-0.5
Right kidney weight0.21.01.7-1.01.30.7-0.9
Cocaine induced anxiety0.20.20.30.5-0.3-0.50.5
Post-drug Anxiety0.00.00.10.1-0.1-0.30.1
Baseline Anxiety0.20.20.4-0.40.20.6-0.4
Tail length0.51.82.2-1.41.31.5-1.1
Length with tail0.73.03.6-1.71.91.7-1.5
Length without tail0.62.12.8-1.41.71.2-1.4
Times rat made contact with spout0.10.10.2-0.10.20.4-0.2
Lifetime Intake0.20.30.50.5-0.6-0.20.7
Liver weight, left0.61.01.1-1.01.01.1-1.0
Liver weight, right1.52.72.8-1.71.71.7-1.5
Locomotor activity1.11.72.1-1.31.41.2-1.3
Locomotor testing distance0.20.40.5-0.60.70.6-0.5
Locomotor testing rearing0.00.10.2-0.20.20.4-0.1
Locomotion in novel chamber0.00.00.1-0.30.10.0-0.0
Locomotion in novel chamber post-restriction0.20.30.4-0.60.40.6-0.4
Fecal boli incidents, locomotor time 12.13.04.01.6-2.0-1.31.9
Change in fecal boli incidents, locomotor task0.30.30.50.7-0.5-0.40.5
Time >=10cm from walls, locomotor time 13.94.25.62.1-2.4-1.52.1
Bouts of movement, locomotor time 11.11.21.31.0-1.1-1.11.1
Total resting periods, locomotor time 10.80.80.90.9-0.9-0.90.9
Rest time, locomotor task time 10.60.81.3-0.70.81.1-0.8
Distance moved, locomotor task time 10.10.10.30.3-0.3-0.50.4
Vertical activity count, locomotor time 10.20.50.7-0.80.80.2-0.8
Time >=10cm from walls, locomotor time 21.11.62.61.3-1.6-0.61.4
Bouts of movement, locomotor time 20.00.00.0-0.20.00.2-0.0
Total resting periods, locomotor time 20.00.00.0-0.10.00.10.0
Rest time, locomotor task time 20.40.50.8-0.50.70.9-0.7
Distance moved, locomotor task time 20.60.71.10.8-0.6-1.00.8
Vertical activity count, locomotor time 20.10.20.3-0.50.60.1-0.5
Light reinforcement 10.61.41.6-1.21.31.1-1.1
Light reinforcement 20.10.10.20.3-0.5-0.20.5
Bone: marrow area1.43.13.5-1.91.71.8-1.6
Bone: maximum diameter0.00.00.1-0.20.20.1-0.2
Bone: maximum force0.30.60.7-0.80.80.8-0.7
Bone: maximum moment0.50.80.9-0.90.90.9-0.9
Mean time between licks in bursts1.43.45.11.8-1.7-2.31.5
Mean num. licks in bursts0.40.71.0-1.00.80.8-0.7
Cd content in liver6.47.17.42.6-2.7-2.62.7
Co content in liver0.00.00.00.2-0.1-0.1-0.2
Cu content in liver0.00.10.1-0.20.20.3-0.2
Fe content in liver0.00.10.10.3-0.1-0.4-0.0
K content in liver0.60.60.7-0.80.70.6-0.8
Mg content in liver0.20.20.3-0.40.40.3-0.5
Mn content in liver0.10.10.20.4-0.4-0.40.3
Na content in liver0.40.40.7-0.60.70.8-0.5
Rb content in liver0.91.01.51.1-0.9-1.20.7
Se content in liver0.20.30.4-0.60.60.3-0.6
Sr content in liver0.30.30.40.5-0.5-0.40.7
Zn content in liver0.20.20.40.5-0.5-0.60.3
Bone: minimum diameter7.613.815.4-3.93.73.7-3.5
Time in familiar zone, hab. session 10.10.10.1-0.30.30.4-0.3
Time in novel zone, hab. session 10.40.40.60.6-0.5-0.80.6
Total zone transitions, hab. session 10.00.10.20.10.10.4-0.0
Total locomotion distance, hab. session 11.52.13.1-1.31.31.8-1.3
Locomotion velocity, hab. session 11.01.42.4-1.11.01.5-1.0
Time in familiar zone, hab. session 20.50.50.70.8-0.7-0.40.8
Time in novel zone, hab. session 20.20.20.3-0.50.5-0.1-0.5
Total zone transitions, hab. session 20.10.10.20.3-0.40.10.4
Total locomotion distance, hab. session 20.30.41.0-0.60.41.0-0.3
Locomotion velocity, hab. session 20.30.41.0-0.50.41.0-0.3
Novel to familiar place preference ratio0.20.20.3-0.30.50.2-0.6
Novelty place preference0.00.00.10.00.2-0.1-0.2
Time in novel zone, NPP test0.10.10.3-0.30.50.1-0.5
Total zone transitions, NPP test0.10.10.20.4-0.3-0.00.4
Total locomotion distance, NPP test0.10.10.4-0.10.20.6-0.1
Locomotion velocity, NPP test0.10.10.10.3-0.30.20.3
Intraocular pressure0.50.70.80.9-0.8-0.80.8
Delta distance traveled before/after self-admin4.24.45.1-1.92.22.3-2.1
Delta ambulatory time before/after self-admin1.82.22.6-1.31.51.6-1.5
Parametrial fat weight1.74.14.5-2.02.12.0-2.0
Pavlov. Cond. lever latency1.62.02.41.5-1.6-1.11.5
Pavlov. Cond. magazine entry latency0.00.00.00.10.0-0.0-0.1
Pavlov. Cond. change in total contacts0.40.40.5-0.70.70.2-0.7
Pavlov. Cond. index score0.60.81.0-0.91.00.6-1.0
Pavlov. Cond. latency score0.81.01.2-1.01.10.7-1.1
Pavlov. Cond. lever contacts1.51.82.1-1.41.51.0-1.4
Pavlov. Cond. magazine entry number0.10.10.10.2-0.3-0.00.4
Pavlov. Cond. intertrial magazine entries0.30.30.5-0.70.60.5-0.5
Pavlov. Cond. lever-magazine prob. diff.0.60.81.0-0.91.00.6-1.0
Pavlov. Cond. response bias0.50.60.8-0.80.80.6-0.9
Pavlov. Cond. lever latency0.60.81.1-0.91.00.4-1.0
Pavlov. Cond. magazine entry latency1.51.82.31.5-1.4-1.11.3
Pavlov. Cond. change in total contacts0.50.81.00.9-1.0-0.61.0
Pavlov. Cond. index score1.11.51.91.3-1.4-0.81.4
Pavlov. Cond. latency score1.52.02.41.5-1.6-1.01.5
Pavlov. Cond. lever contacts0.20.30.40.5-0.6-0.00.7
Pavlov. Cond. magazine entry number2.53.13.7-1.91.91.4-1.8
Pavlov. Cond. intertrial magazine entries1.62.32.5-1.61.61.5-1.4
Pavlov. Cond. lever-magazine prob. diff.1.01.31.71.2-1.3-0.71.2
Pavlov. Cond. response bias0.81.01.31.1-1.2-0.51.1
Time in closed arm before self-admin1.11.42.0-1.41.20.8-1.1
Time in closed arm after self-admin0.10.10.2-0.10.1-0.40.1
Time in open arm before self-admin0.10.10.40.6-0.1-0.20.1
Time in open arm after self-admin0.40.50.9-0.60.50.9-0.6
Bone: periosteal estimation1.02.12.5-1.61.41.4-1.4
Bone: periosteal perimeter0.20.30.5-0.60.50.7-0.4
Bone: post-yield work0.10.20.3-0.50.40.3-0.4
Progressive ratio test 1 active lever presses0.00.10.1-0.20.30.2-0.2
Progressive ratio test 1 breakpoint0.00.10.1-0.20.30.3-0.2
Progressive ratio test 1 inactive lever presses1.52.22.8-1.61.31.7-1.3
Progressive ratio test 2 active lever presses0.10.10.1-0.30.40.1-0.2
Progressive ratio test 2 breakpoint0.10.10.1-0.30.40.1-0.2
Progressive ratio test 2 inactive lever presses0.81.41.6-1.31.11.2-1.0
Incentive Sensitization - Responses0.20.30.40.3-0.5-0.60.6
Incentive Sensitization - Breakpoint0.20.20.30.3-0.4-0.60.5
Sum of active levers in priming session hrs 5-60.00.00.1-0.0-0.00.2-0.0
Progressive ratio0.10.10.10.3-0.3-0.10.4
Food seeking constrained by brief footshock0.10.10.30.6-0.2-0.30.1
Seeking ratio, punishment vs. effort0.50.71.1-0.71.00.6-1.1
Retroperitoneal fat weight0.21.11.7-1.11.30.7-1.0
Reaction time number correct0.00.00.1-0.0-0.20.00.3
Reaction time mean minus median0.30.91.00.9-0.9-0.81.0
Reaction time mean minus median AUC0.20.50.70.6-0.6-0.90.7
Reaction time num false alarms0.30.40.5-0.70.70.2-0.7
Reaction time num false alarms AUC0.00.00.1-0.20.2-0.1-0.2
Reaction time trials correct on left0.00.00.1-0.0-0.20.00.3
Reaction time trials on left0.00.00.10.0-0.20.00.3
Reaction time mean1.01.62.11.1-1.4-1.21.3
Reaction time mean AUC0.81.31.70.9-1.3-1.11.1
Median of all reaction times1.01.41.91.0-1.4-1.21.2
Reaction time omissions0.91.31.51.1-1.1-1.21.1
Reaction time false alarm rate0.00.10.1-0.20.3-0.2-0.4
Reaction time premature initiation rate0.30.50.8-0.90.50.6-0.7
Reaction time premature initiations0.30.51.0-1.00.50.6-0.6
Std. dev. reaction times0.40.80.90.7-1.0-0.90.9
Reaction time trials completed0.00.00.10.0-0.20.00.3
Reaction time trials AUC0.00.00.10.1-0.2-0.10.3
Run reversals in cocaine runway, females3.73.74.3-1.92.11.8-1.9
Run reversals in cocaine runway, males0.10.10.10.2-0.1-0.4-0.0
Latency to leave start box in cocaine runway1.31.52.6-1.11.01.6-1.0
Latency to leave start box in cocaine runway, F3.43.95.1-2.01.92.3-1.8
Latency to leave start box in cocaine runway, M0.10.00.10.3-0.20.20.1
Std. dev. time between licks in bursts0.60.91.30.9-0.9-1.10.7
Total sessions with >9 infusions1.82.22.61.5-1.4-1.31.6
Short access day 1 total inactive lever presses0.20.30.6-0.50.20.8-0.2
Short access day 10 total inactive lever presses0.61.41.9-1.41.01.3-1.0
Short access day 1 total infusions0.10.10.2-0.30.30.4-0.1
Short access day 10 total infusions0.50.71.00.9-1.0-0.30.9
Short access total infusions1.01.31.71.1-1.3-0.71.3
Short access day 1 locomotion0.10.10.10.4-0.2-0.10.3
Short access day 10 total locomotion0.10.10.20.1-0.4-0.30.4
Short access total locomotion0.40.50.60.6-0.7-0.60.8
One hour access (0.3 mA shock)0.10.10.3-0.10.10.50.0
Compulsive drug intake0.20.20.40.4-0.60.40.4
One hour access (shock baseline)0.10.10.3-0.30.50.1-0.3
Social response proportion0.70.81.4-0.80.61.2-0.8
Social responses0.81.11.3-1.01.10.9-1.1
Social time0.20.30.5-0.50.50.7-0.4
Soleus weight0.51.51.91.1-1.2-1.11.4
Bone: stiffness1.42.32.7-1.61.61.2-1.5
Tibialis anterior weight4.314.516.53.8-3.7-4.13.7
Time to tail flick, vehicle, before self-admin2.82.93.3-1.51.81.6-1.8
Time to tail flick, vehicle, after self-admin1.01.41.8-1.31.11.2-1.0
Time to tail flick, test, before self-admin0.00.00.0-0.10.1-0.0-0.2
Time to tail flick, test, after self-admin2.42.53.0-1.71.61.4-1.5
Delta time to tail flick, vehicle, before/after SA0.00.00.1-0.30.10.0-0.0
Delta time to tail flick, test, before/after SA0.90.91.2-1.11.00.9-0.8
Tibia length0.41.01.6-1.31.00.7-1.0
Ambulatory time before self-admin0.00.00.0-0.0-0.10.00.1
Ambulatory time after self-admin3.44.05.5-1.91.92.3-1.8
Bone: tissue strength1.11.11.3-1.11.01.0-1.0
Total heroin consumption1.51.82.3-1.21.51.1-1.5
Bone: trabecular number0.00.00.10.2-0.00.00.0
Bone: trabecular spacing0.10.10.1-0.30.2-0.4-0.2
Bone: trabecular thickness0.10.10.3-0.20.20.5-0.1
Bone: trabecular tissue density0.40.50.90.7-0.7-1.00.6
Water consumed over 24 hours1.41.92.4-1.21.41.6-1.3
Number of responses in last shaping day0.30.30.40.6-0.6-0.50.6