Sult1e1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver mRNA stability Sult1e1 0.52 0.13 0.0e+00 0.27 0.3 0.32 0.32 5.5e-30 4.8e-33 4.7e-36 3.8e-36
2 Liver intron excision ratio chr14_20713137_20714909 0.09 0.07 9.0e-08 0.07 0.06 0.08 0.07 7.2e-08 8.8e-07 8.8e-09 1.8e-08
3 Liver gene expression Sult1e1 0.55 0.09 0.0e+00 0.44 0.43 0.46 0.46 2.0e-53 2.8e-52 2.7e-57 4.5e-57
4 Liver intron excision ratio chr14_20709460_20713011 0.07 0.06 1.7e-06 0.07 0.04 0.05 0.05 8.5e-08 3.2e-05 3.2e-06 1.1e-06

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.00.00.10.30.10.1-0.1
Area under the delay curve0.00.00.0-0.2-0.00.0-0.0
BMI with tail1.86.17.22.42.42.7-2.4
BMI without tail1.05.15.42.12.22.3-2.3
Body weight0.00.20.40.30.10.6-0.4
Weight adjusted by age0.51.41.71.31.01.1-1.3
Bone surface0.00.10.1-0.0-0.2-0.30.2
Bone volume0.30.70.8-0.8-0.8-0.90.8
Breakpoint value in progressive ratio session0.00.00.1-0.3-0.2-0.30.1
Number of licking bursts0.00.10.30.50.30.2-0.3
Context. condit. distance diff. score0.20.30.4-0.6-0.4-0.50.5
Locomotion velocity, session 10.91.01.01.01.01.0-0.9
Locomotion distance, session 10.20.20.3-0.5-0.4-0.50.4
Locomotion velocity, session 20.10.10.1-0.3-0.3-0.20.3
Locomotion distance, session 20.10.20.2-0.4-0.4-0.50.5
Locomotion velocity, session 30.30.30.5-0.6-0.5-0.70.3
Locomotion distance, session 30.00.00.0-0.10.0-0.20.1
Stereotopy head waving bouts, day 30.70.80.90.80.90.9-1.0
Stereotopy head waving duration, day 30.20.20.40.40.50.4-0.6
Locomotion velocity, session 72.73.03.2-1.8-1.7-1.81.6
Locomotion distance, session 72.53.23.9-1.8-1.8-1.72.0
Stereotopy head waving bouts, day 70.80.91.20.90.90.8-1.1
Stereotopy head waving duration, day 70.91.11.50.91.01.0-1.2
Locomotion velocity, session 80.00.00.0-0.10.10.1-0.2
Locomotion distance, session 80.81.11.3-1.1-0.9-1.11.1
Degree of sensitization distance2.42.62.9-1.7-1.7-1.31.7
Degree of sensitization stereotypy0.20.30.40.50.50.3-0.7
Conditioned locomotion0.40.50.60.70.80.7-0.6
Cocaine response after cond. corrected0.50.81.0-0.8-0.9-1.00.9
Cocaine response after cond. not corrected0.50.71.0-0.7-0.8-1.00.8
Cocaine response before conditioning0.10.20.20.50.40.3-0.5
Saline control response0.40.50.7-0.8-0.6-0.80.6
Bone: connectivity density0.20.30.60.80.50.4-0.5
Bone: cortical apparent density0.10.10.10.30.30.3-0.3
Bone: cortical area0.40.70.9-1.0-0.8-0.70.8
Bone: cortical porosity1.51.62.01.41.41.0-1.2
Bone: cortical porosity2.83.03.41.91.81.7-1.6
Bone: cortical thickness0.10.20.30.40.40.6-0.3
Bone: cortical thickness0.20.20.5-0.4-0.4-0.70.3
Bone: cortical tissue density0.10.10.20.30.40.4-0.4
Condit. Reinf. active minus inactive responses0.30.40.70.60.50.8-0.5
Condit. Reinf. active-inactive response ratio2.02.12.91.51.31.7-1.3
Condit. Reinf. active responses0.10.10.1-0.2-0.2-0.20.4
Condit. Reinf. inactive responses1.51.92.6-1.3-1.2-1.61.3
Incentive salience index mean0.00.00.00.0-0.10.20.1
Condit. Reinf. lever presses0.00.00.10.20.20.1-0.1
Condit. Reinf. active minus inactive responses0.00.00.10.00.0-0.30.1
Condit. Reinf. active-inactive response ratio0.10.10.2-0.2-0.1-0.50.3
Condit. Reinf. active responses0.10.10.2-0.2-0.3-0.50.4
Condit. Reinf. inactive responses0.50.80.9-0.8-1.0-0.80.9
Condit. Reinf. lever presses0.30.51.0-0.7-0.5-1.00.4
Condit. Reinf. lever reinforcers received0.10.20.3-0.3-0.4-0.60.5
Conditioned reinforcement - actives0.00.00.0-0.1-0.20.1-0.0
Conditioned reinforcement - inactives0.10.10.3-0.5-0.0-0.6-0.0
Conditioned locomotion0.50.81.2-0.9-1.1-0.60.9
Patch foraging indifference point 0 sec0.10.40.4-0.6-0.6-0.60.5
Patch foraging indifference point AUC2.15.15.7-2.2-2.3-2.12.4
Delay disc. indifference point, 0s delay0.10.10.10.30.30.2-0.3
Delay disc. indifference point, 16s delay0.60.81.10.61.01.0-0.9
Delay disc. indifference point, 2s delay4.34.95.2-2.2-2.3-2.12.3
Delay disc. indifference point, 24s delay0.00.00.0-0.2-0.20.10.2
Delay disc. indifference point, 4s delay0.10.10.1-0.3-0.1-0.4-0.1
Delay disc. indifference point, 8s delay0.61.01.30.91.01.1-1.0
Indifference point function ln k0.72.22.31.41.51.5-1.5
Indifference point function log k0.72.22.31.41.51.5-1.5
Patch foraging total patch changes 0 sec0.20.50.6-0.8-0.7-0.80.6
Patch foraging total patch changes 12 sec1.82.43.1-1.5-1.8-1.01.7
Patch foraging total patch changes 18 sec0.10.20.4-0.4-0.4-0.60.4
Patch foraging total patch changes 24 sec0.82.63.1-1.6-1.8-1.41.7
Patch foraging total patch changes 6 sec1.72.93.0-1.7-1.7-1.71.7
Patch foraging time to switch 0 sec2.07.67.82.82.82.7-2.7
Patch foraging water rate 0 sec1.34.95.4-2.2-2.3-2.02.3
Patch foraging water rate 12 sec0.31.21.3-1.1-1.1-1.11.1
Patch foraging water rate 18 sec1.84.04.3-1.9-2.1-2.02.0
Patch foraging water rate 24 sec1.62.23.0-1.4-1.4-1.71.4
Patch foraging water rate 6 sec1.52.22.6-1.6-1.6-1.31.5
Seeking ratio, delayed vs. immediate footshock0.20.20.8-0.3-0.1-0.90.2
Distance traveled before self-admin0.00.00.00.10.20.0-0.2
Distance traveled after self-admin2.34.06.1-1.9-1.9-2.51.8
Extensor digitorum longus weight10.742.846.16.86.56.7-6.2
Bone: elastic displacement0.20.30.40.60.60.3-0.6
Bone: elastic work0.40.50.90.90.80.1-0.8
Bone: endosteal estimation1.33.33.6-1.9-1.7-1.91.7
Bone: endosteal perimeter0.10.30.7-0.5-0.4-0.80.3
Epididymis fat weight0.00.10.2-0.00.10.5-0.2
Delta time in closed arm before/after self-admin1.00.91.21.10.81.1-0.8
Delta time in open arm before/after self-admin0.50.60.9-1.0-0.7-0.60.8
Diff in mean of infusions in LGA sessions0.00.10.1-0.00.40.3-0.1
Delay discount exponential model param0.10.10.20.40.30.2-0.2
Extinction: sum of active levers before priming0.10.10.30.20.6-0.0-0.2
Active lever presses in extinction session 61.01.01.1-1.0-0.9-1.01.0
Bone: final force0.20.30.3-0.6-0.5-0.50.5
Bone: final moment0.20.30.4-0.6-0.6-0.50.6
Food consumed during 24 hour testing period1.42.83.7-1.6-1.6-1.91.6
Glucose1.01.61.9-1.3-1.4-1.11.3
Heart weight0.30.51.00.50.51.0-0.7
Delay discount hyperbolic model param0.20.30.40.60.50.5-0.4
Intermittent access intake day 1-15 change0.10.40.50.70.50.7-0.6
Intermittent access intake escalation0.20.81.01.00.71.0-1.0
Intermittent access intake escalation 20.10.10.2-0.5-0.3-0.40.2
Intermitt. access day 1 inactive lever presses0.22.63.6-1.9-1.4-1.61.5
Intermitt. access day 15 inactive lever presses0.84.25.0-2.2-2.0-2.11.9
Intermitt. access escalation Index0.61.82.31.41.51.1-1.3
Intermittent access day 1 total infusions0.00.00.0-0.10.0-0.2-0.0
Intermittent access day 15 total infusions0.00.00.00.0-0.1-0.1-0.1
Intermittent access terminal intake (last 3 days)0.50.80.9-1.0-0.9-1.00.8
Intermittent access total infusions0.00.00.1-0.2-0.1-0.3-0.0
Intermittent access day 1 locomotion0.30.50.6-0.8-0.8-0.70.6
Intermittent access day 15 total locomotion0.20.81.3-0.9-1.1-0.50.9
Intermittent access total locomotion0.00.00.2-0.1-0.40.00.1
Intermittent access standard deviation0.10.50.8-0.9-0.6-0.90.4
Left kidney weight0.00.30.5-0.6-0.7-0.30.5
Right kidney weight0.11.01.7-1.0-1.3-0.70.9
Cocaine induced anxiety0.10.20.30.50.30.5-0.5
Post-drug Anxiety0.00.00.10.10.10.3-0.1
Baseline Anxiety0.10.20.4-0.4-0.2-0.60.4
Tail length0.31.82.2-1.4-1.3-1.51.1
Length with tail0.73.03.6-1.7-1.9-1.71.5
Length without tail0.42.12.8-1.4-1.7-1.21.4
Times rat made contact with spout0.10.10.1-0.1-0.2-0.40.2
Lifetime Intake0.20.30.50.50.60.2-0.7
Liver weight, left0.61.01.1-1.0-1.0-1.01.0
Liver weight, right1.52.72.8-1.7-1.7-1.71.5
Locomotor activity1.11.72.1-1.3-1.4-1.21.3
Locomotor testing distance0.20.40.5-0.6-0.7-0.60.5
Locomotor testing rearing0.00.10.2-0.2-0.2-0.40.1
Locomotion in novel chamber0.00.00.1-0.3-0.1-0.00.0
Locomotion in novel chamber post-restriction0.10.30.4-0.6-0.4-0.60.4
Fecal boli incidents, locomotor time 11.13.04.01.62.01.3-1.9
Change in fecal boli incidents, locomotor task0.30.30.50.70.50.4-0.5
Time >=10cm from walls, locomotor time 13.44.25.62.12.41.5-2.1
Bouts of movement, locomotor time 10.91.21.31.01.11.1-1.1
Total resting periods, locomotor time 10.70.80.90.90.90.9-0.9
Rest time, locomotor task time 10.50.81.3-0.7-0.8-1.20.8
Distance moved, locomotor task time 10.10.10.30.30.30.5-0.4
Vertical activity count, locomotor time 10.10.50.7-0.8-0.8-0.20.8
Time >=10cm from walls, locomotor time 20.61.62.61.31.60.6-1.4
Bouts of movement, locomotor time 20.00.00.0-0.2-0.0-0.20.0
Total resting periods, locomotor time 20.00.00.0-0.1-0.0-0.1-0.0
Rest time, locomotor task time 20.30.50.8-0.5-0.7-0.90.7
Distance moved, locomotor task time 20.50.71.10.80.61.0-0.8
Vertical activity count, locomotor time 20.10.20.3-0.5-0.6-0.10.5
Light reinforcement 10.31.41.6-1.2-1.3-1.11.1
Light reinforcement 20.10.10.20.30.50.2-0.5
Bone: marrow area1.33.13.5-1.9-1.7-1.81.6
Bone: maximum diameter0.00.00.1-0.2-0.2-0.10.2
Bone: maximum force0.30.60.7-0.8-0.8-0.80.7
Bone: maximum moment0.40.80.9-0.9-0.9-0.90.9
Mean time between licks in bursts0.63.45.11.81.72.3-1.5
Mean num. licks in bursts0.20.71.0-1.0-0.8-0.70.7
Cd content in liver6.47.17.42.62.72.6-2.7
Co content in liver0.00.00.00.20.10.10.2
Cu content in liver0.00.10.1-0.2-0.2-0.30.2
Fe content in liver0.00.10.10.30.10.40.0
K content in liver0.60.60.7-0.8-0.7-0.60.8
Mg content in liver0.20.20.3-0.4-0.4-0.30.5
Mn content in liver0.10.10.20.40.40.4-0.3
Na content in liver0.40.40.7-0.6-0.7-0.80.5
Rb content in liver0.91.01.51.10.91.2-0.7
Se content in liver0.20.30.4-0.6-0.6-0.30.6
Sr content in liver0.30.30.40.50.50.3-0.7
Zn content in liver0.20.20.40.50.50.6-0.3
Bone: minimum diameter7.213.815.4-3.9-3.7-3.63.5
Time in familiar zone, hab. session 10.10.10.1-0.3-0.3-0.40.3
Time in novel zone, hab. session 10.40.40.60.60.50.8-0.6
Total zone transitions, hab. session 10.00.10.20.1-0.1-0.40.0
Total locomotion distance, hab. session 11.52.13.1-1.3-1.3-1.81.3
Locomotion velocity, hab. session 11.01.42.4-1.1-1.0-1.51.0
Time in familiar zone, hab. session 20.40.50.70.80.70.4-0.8
Time in novel zone, hab. session 20.20.20.3-0.5-0.50.10.5
Total zone transitions, hab. session 20.10.10.20.30.4-0.1-0.4
Total locomotion distance, hab. session 20.30.41.0-0.6-0.4-1.00.3
Locomotion velocity, hab. session 20.30.41.0-0.5-0.4-1.00.3
Novel to familiar place preference ratio0.10.20.3-0.3-0.5-0.20.6
Novelty place preference0.00.00.10.0-0.20.10.2
Time in novel zone, NPP test0.10.10.3-0.3-0.5-0.10.5
Total zone transitions, NPP test0.10.10.20.40.30.0-0.4
Total locomotion distance, NPP test0.10.10.4-0.1-0.2-0.60.1
Locomotion velocity, NPP test0.10.10.10.30.3-0.3-0.3
Intraocular pressure0.40.70.80.90.80.8-0.8
Delta distance traveled before/after self-admin4.04.45.1-1.9-2.2-2.32.1
Delta ambulatory time before/after self-admin1.32.22.6-1.3-1.5-1.61.5
Parametrial fat weight1.74.14.5-2.0-2.1-2.02.0
Pavlov. Cond. lever latency1.62.02.41.51.61.1-1.5
Pavlov. Cond. magazine entry latency0.00.00.00.1-0.00.00.1
Pavlov. Cond. change in total contacts0.40.40.5-0.7-0.7-0.20.7
Pavlov. Cond. index score0.60.81.0-0.9-1.0-0.61.0
Pavlov. Cond. latency score0.81.01.2-1.0-1.1-0.71.1
Pavlov. Cond. lever contacts1.51.82.1-1.4-1.5-1.01.4
Pavlov. Cond. magazine entry number0.10.10.10.20.30.0-0.4
Pavlov. Cond. intertrial magazine entries0.30.30.5-0.7-0.6-0.50.5
Pavlov. Cond. lever-magazine prob. diff.0.60.81.0-0.9-1.0-0.61.0
Pavlov. Cond. response bias0.50.60.8-0.8-0.8-0.60.9
Pavlov. Cond. lever latency0.60.81.1-0.9-1.0-0.41.0
Pavlov. Cond. magazine entry latency1.31.82.31.51.41.1-1.3
Pavlov. Cond. change in total contacts0.30.81.00.91.00.6-1.0
Pavlov. Cond. index score1.01.51.91.31.40.8-1.4
Pavlov. Cond. latency score1.22.02.41.51.61.0-1.5
Pavlov. Cond. lever contacts0.20.30.40.50.60.0-0.7
Pavlov. Cond. magazine entry number2.43.13.7-1.9-1.9-1.41.8
Pavlov. Cond. intertrial magazine entries1.12.32.5-1.6-1.6-1.51.4
Pavlov. Cond. lever-magazine prob. diff.0.91.31.71.21.30.7-1.2
Pavlov. Cond. response bias0.71.01.31.11.20.5-1.1
Time in closed arm before self-admin0.81.42.0-1.4-1.2-0.81.1
Time in closed arm after self-admin0.10.10.2-0.2-0.10.4-0.1
Time in open arm before self-admin0.10.10.40.60.10.2-0.1
Time in open arm after self-admin0.40.50.9-0.6-0.5-0.90.6
Bone: periosteal estimation0.92.12.5-1.6-1.4-1.41.4
Bone: periosteal perimeter0.20.30.5-0.6-0.5-0.70.4
Bone: post-yield work0.10.20.3-0.5-0.4-0.30.4
Progressive ratio test 1 active lever presses0.00.10.1-0.2-0.3-0.20.2
Progressive ratio test 1 breakpoint0.00.10.1-0.2-0.3-0.30.2
Progressive ratio test 1 inactive lever presses0.82.22.8-1.6-1.3-1.71.3
Progressive ratio test 2 active lever presses0.10.10.1-0.3-0.4-0.10.2
Progressive ratio test 2 breakpoint0.10.10.1-0.3-0.4-0.10.2
Progressive ratio test 2 inactive lever presses0.41.41.6-1.3-1.1-1.21.0
Incentive Sensitization - Responses0.10.30.40.30.50.6-0.6
Incentive Sensitization - Breakpoint0.10.20.30.30.40.6-0.5
Sum of active levers in priming session hrs 5-60.00.00.1-0.00.0-0.20.0
Progressive ratio0.00.10.10.30.30.1-0.4
Food seeking constrained by brief footshock0.10.10.30.60.20.3-0.1
Seeking ratio, punishment vs. effort0.30.71.1-0.7-1.0-0.61.1
Retroperitoneal fat weight0.21.11.7-1.1-1.3-0.71.0
Reaction time number correct0.00.00.1-0.00.2-0.1-0.3
Reaction time mean minus median0.10.91.00.90.90.8-1.0
Reaction time mean minus median AUC0.10.50.70.60.60.9-0.7
Reaction time num false alarms0.20.40.5-0.7-0.7-0.20.7
Reaction time num false alarms AUC0.00.00.1-0.2-0.20.10.2
Reaction time trials correct on left0.00.00.1-0.00.2-0.1-0.3
Reaction time trials on left0.00.00.10.00.2-0.0-0.3
Reaction time mean0.71.62.11.11.41.2-1.3
Reaction time mean AUC0.51.31.70.91.31.1-1.1
Median of all reaction times0.91.41.91.01.41.2-1.2
Reaction time omissions0.81.31.51.11.11.2-1.1
Reaction time false alarm rate0.00.10.1-0.2-0.30.20.4
Reaction time premature initiation rate0.30.50.8-0.9-0.5-0.60.7
Reaction time premature initiations0.20.51.0-1.0-0.5-0.60.6
Std. dev. reaction times0.20.80.90.71.00.9-0.9
Reaction time trials completed0.00.00.10.00.2-0.0-0.3
Reaction time trials AUC0.00.00.10.10.20.1-0.3
Run reversals in cocaine runway, females3.33.74.3-1.9-2.1-1.81.9
Run reversals in cocaine runway, males0.00.10.10.20.10.40.0
Latency to leave start box in cocaine runway1.11.52.6-1.1-1.0-1.61.0
Latency to leave start box in cocaine runway, F3.13.95.1-2.0-1.9-2.31.8
Latency to leave start box in cocaine runway, M0.10.00.10.30.2-0.2-0.1
Std. dev. time between licks in bursts0.50.91.30.90.91.1-0.7
Total sessions with >9 infusions1.72.22.61.51.41.3-1.6
Short access day 1 total inactive lever presses0.10.30.7-0.5-0.2-0.80.2
Short access day 10 total inactive lever presses0.21.41.9-1.4-1.0-1.31.0
Short access day 1 total infusions0.00.10.2-0.3-0.3-0.40.1
Short access day 10 total infusions0.40.71.00.91.00.3-0.9
Short access total infusions0.91.31.71.11.30.7-1.3
Short access day 1 locomotion0.00.10.10.40.20.1-0.3
Short access day 10 total locomotion0.00.10.20.10.40.3-0.4
Short access total locomotion0.30.50.60.60.70.6-0.8
One hour access (0.3 mA shock)0.10.10.3-0.1-0.1-0.5-0.0
Compulsive drug intake0.10.20.40.40.6-0.4-0.4
One hour access (shock baseline)0.00.10.3-0.3-0.5-0.10.3
Social response proportion0.60.81.4-0.8-0.6-1.20.8
Social responses0.81.11.3-1.0-1.1-0.91.1
Social time0.20.30.5-0.5-0.5-0.70.4
Soleus weight0.51.51.91.11.21.1-1.4
Bone: stiffness1.22.32.7-1.6-1.6-1.21.5
Tibialis anterior weight4.214.516.53.83.74.1-3.7
Time to tail flick, vehicle, before self-admin2.32.93.3-1.5-1.8-1.61.8
Time to tail flick, vehicle, after self-admin0.71.41.8-1.3-1.1-1.21.0
Time to tail flick, test, before self-admin0.00.00.0-0.1-0.10.00.2
Time to tail flick, test, after self-admin2.32.53.0-1.7-1.6-1.41.5
Delta time to tail flick, vehicle, before/after SA0.00.00.1-0.3-0.1-0.00.0
Delta time to tail flick, test, before/after SA0.70.91.2-1.1-1.0-0.90.8
Tibia length0.41.01.6-1.3-1.0-0.71.0
Ambulatory time before self-admin0.00.00.0-0.00.1-0.0-0.1
Ambulatory time after self-admin2.54.05.5-1.9-1.9-2.31.8
Bone: tissue strength1.11.11.3-1.1-1.0-1.01.0
Total heroin consumption1.51.82.3-1.2-1.5-1.11.5
Bone: trabecular number0.00.00.10.20.0-0.0-0.0
Bone: trabecular spacing0.10.10.1-0.3-0.20.40.2
Bone: trabecular thickness0.10.10.3-0.2-0.2-0.50.1
Bone: trabecular tissue density0.30.50.90.70.71.0-0.6
Water consumed over 24 hours1.01.92.4-1.2-1.4-1.61.3
Number of responses in last shaping day0.30.30.40.60.60.5-0.6