Stk17b

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain alternative TSS XM_039082991.2 0.02 0.02 5.4e-03 0.03 0.02 0.02 0.03 3.6e-04 4.4e-03 6.9e-03 1.3e-03
2 Adipose gene expression Stk17b 0.03 0.03 2.6e-04 0.01 0.01 0.01 0.01 1.2e-02 6.7e-03 5.8e-02 1.8e-02
3 Brain isoform ratio XM_039082991.2 0.03 0.02 4.4e-03 0.02 0.02 0.01 0.01 5.9e-03 8.4e-03 3.8e-02 1.7e-02
4 IC alternative TSS XM_039082990.2 0.18 0.1 2.9e-03 0.03 0.05 0.03 0.04 2.0e-02 4.6e-03 1.8e-02 8.8e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density3.25.58.6-2.92.6-2.6-0.1
Area under the delay curve0.60.71.00.9-1.00.90.2
BMI with tail3.311.514.43.5-3.83.6-2.6
BMI without tail0.31.02.20.8-0.90.6-1.5
Body weight1.56.49.7-3.13.0-2.6-0.5
Weight adjusted by age0.71.12.0-1.20.9-0.31.4
Bone surface3.15.710.1-3.22.5-2.6-0.1
Bone volume3.36.010.6-3.22.6-2.60.1
Breakpoint value in progressive ratio session0.50.71.7-0.40.9-1.30.1
Number of licking bursts0.10.20.40.4-0.60.70.1
Context. condit. distance diff. score1.51.92.71.0-1.51.3-1.6
Locomotion velocity, session 12.42.64.42.1-1.71.80.3
Locomotion distance, session 10.91.21.91.4-1.00.6-1.3
Locomotion velocity, session 22.93.35.62.4-2.01.8-0.5
Locomotion distance, session 20.20.20.60.8-0.30.1-0.4
Locomotion velocity, session 30.60.61.9-0.30.4-0.6-1.4
Locomotion distance, session 30.00.00.1-0.30.10.0-0.1
Stereotopy head waving bouts, day 30.50.50.90.9-0.80.7-0.5
Stereotopy head waving duration, day 30.30.30.90.6-0.20.1-1.0
Locomotion velocity, session 73.23.54.82.1-2.22.1-0.4
Locomotion distance, session 70.20.30.40.5-0.70.3-0.6
Stereotopy head waving bouts, day 70.40.40.60.8-0.30.60.7
Stereotopy head waving duration, day 70.20.20.40.6-0.30.6-0.1
Locomotion velocity, session 82.73.25.31.9-2.02.30.1
Locomotion distance, session 81.31.92.41.4-1.41.1-1.5
Degree of sensitization distance0.00.00.10.2-0.3-0.1-0.0
Degree of sensitization stereotypy0.20.20.40.6-0.10.50.6
Conditioned locomotion3.33.85.1-2.12.3-2.11.1
Cocaine response after cond. corrected1.92.26.1-1.01.1-0.82.5
Cocaine response after cond. not corrected1.82.25.1-1.21.1-0.92.2
Cocaine response before conditioning0.20.20.50.1-0.50.4-0.7
Saline control response0.40.62.0-0.10.0-0.6-1.4
Bone: connectivity density1.21.93.5-1.91.4-1.50.0
Bone: cortical apparent density5.06.88.72.8-2.92.5-2.1
Bone: cortical area0.10.20.3-0.50.5-0.4-0.2
Bone: cortical porosity2.93.14.3-2.12.0-1.90.7
Bone: cortical porosity5.25.68.3-2.92.7-2.50.6
Bone: cortical thickness0.81.31.91.3-1.11.4-0.6
Bone: cortical thickness2.22.53.81.7-1.51.91.1
Bone: cortical tissue density4.96.78.52.7-2.92.4-2.1
Condit. Reinf. active minus inactive responses1.01.12.3-0.60.9-1.11.5
Condit. Reinf. active-inactive response ratio0.70.72.1-0.20.4-0.71.5
Condit. Reinf. active responses1.11.31.8-0.91.1-1.11.3
Condit. Reinf. inactive responses0.10.10.2-0.40.5-0.3-0.0
Incentive salience index mean0.91.12.9-0.40.8-0.91.7
Condit. Reinf. lever presses0.20.30.5-0.30.6-0.60.7
Condit. Reinf. active minus inactive responses2.93.77.1-1.12.0-1.62.7
Condit. Reinf. active-inactive response ratio2.52.89.4-0.61.1-0.53.1
Condit. Reinf. active responses0.91.32.7-0.71.1-0.91.6
Condit. Reinf. inactive responses0.40.51.40.5-0.60.4-1.2
Condit. Reinf. lever presses0.60.81.21.1-0.90.90.7
Condit. Reinf. lever reinforcers received0.91.23.1-0.61.0-0.71.7
Conditioned reinforcement - actives0.61.13.1-0.10.3-1.0-1.8
Conditioned reinforcement - inactives0.10.10.3-0.10.1-0.6-0.3
Conditioned locomotion0.91.14.2-0.0-0.1-0.6-2.0
Patch foraging indifference point 0 sec0.81.62.61.3-1.61.40.3
Patch foraging indifference point AUC0.00.10.2-0.40.1-0.20.3
Delay disc. indifference point, 0s delay1.81.93.01.6-1.71.2-0.8
Delay disc. indifference point, 16s delay0.20.20.30.4-0.50.50.3
Delay disc. indifference point, 2s delay0.70.80.90.8-0.90.90.9
Delay disc. indifference point, 24s delay0.10.10.20.4-0.50.4-0.1
Delay disc. indifference point, 4s delay1.81.92.81.4-1.71.6-0.6
Delay disc. indifference point, 8s delay0.10.10.3-0.0-0.10.10.5
Indifference point function ln k1.01.82.61.5-1.31.60.7
Indifference point function log k1.01.82.61.5-1.31.60.7
Patch foraging total patch changes 0 sec0.81.42.31.3-1.51.30.2
Patch foraging total patch changes 12 sec0.00.10.1-0.2-0.3-0.3-0.0
Patch foraging total patch changes 18 sec1.62.43.91.8-2.01.50.0
Patch foraging total patch changes 24 sec0.10.10.20.0-0.3-0.0-0.5
Patch foraging total patch changes 6 sec0.91.32.30.9-1.51.40.1
Patch foraging time to switch 0 sec0.20.50.7-0.60.5-0.8-0.8
Patch foraging water rate 0 sec0.00.00.10.3-0.00.10.2
Patch foraging water rate 12 sec0.71.52.11.3-1.01.51.1
Patch foraging water rate 18 sec0.10.20.3-0.50.30.10.5
Patch foraging water rate 24 sec0.10.10.20.10.4-0.40.1
Patch foraging water rate 6 sec0.10.20.40.4-0.40.6-0.4
Seeking ratio, delayed vs. immediate footshock1.21.42.3-0.71.5-1.41.0
Distance traveled before self-admin1.62.03.9-0.92.0-1.70.8
Distance traveled after self-admin0.40.51.21.10.0-0.00.8
Extensor digitorum longus weight2.18.49.42.7-3.12.7-3.1
Bone: elastic displacement0.50.61.9-0.6-0.10.41.4
Bone: elastic work1.82.35.0-2.21.4-1.40.5
Bone: endosteal estimation3.98.612.4-3.53.1-3.31.0
Bone: endosteal perimeter2.96.29.4-3.12.6-2.80.9
Epididymis fat weight0.62.23.4-1.61.9-1.5-0.5
Delta time in closed arm before/after self-admin0.70.61.81.3-0.60.70.1
Delta time in open arm before/after self-admin5.75.66.6-2.62.4-2.02.5
Diff in mean of infusions in LGA sessions0.10.10.10.4-0.1-0.30.2
Delay discount exponential model param0.50.60.8-0.80.9-0.8-0.4
Extinction: sum of active levers before priming0.91.01.5-0.91.2-1.2-0.4
Active lever presses in extinction session 61.81.82.8-1.71.3-1.70.2
Bone: final force2.94.77.0-2.22.5-2.6-0.7
Bone: final moment2.64.15.7-2.12.3-2.4-0.9
Food consumed during 24 hour testing period0.71.03.8-0.40.2-0.4-1.9
Glucose0.91.45.50.10.1-0.3-2.4
Heart weight0.30.51.70.30.10.61.3
Delay discount hyperbolic model param0.50.60.8-0.80.9-0.9-0.4
Intermittent access intake day 1-15 change0.61.23.10.2-0.80.9-1.8
Intermittent access intake escalation0.71.53.00.5-1.11.2-1.7
Intermittent access intake escalation 20.40.41.1-0.60.10.4-1.0
Intermitt. access day 1 inactive lever presses0.93.47.01.8-1.60.8-2.6
Intermitt. access day 15 inactive lever presses0.30.71.5-0.1-1.11.2-0.4
Intermitt. access escalation Index0.40.51.4-1.20.80.1-0.4
Intermittent access day 1 total infusions1.72.75.5-1.61.5-2.3-0.6
Intermittent access day 15 total infusions0.71.13.7-0.40.1-0.7-1.9
Intermittent access terminal intake (last 3 days)0.91.24.2-0.50.1-0.6-2.1
Intermittent access total infusions1.41.62.9-1.10.9-1.7-1.3
Intermittent access day 1 locomotion0.50.71.6-0.50.5-1.3-0.7
Intermittent access day 15 total locomotion0.51.03.0-0.70.2-0.6-1.7
Intermittent access total locomotion0.80.93.2-0.20.0-0.6-1.8
Intermittent access standard deviation0.30.72.6-0.3-0.2-0.0-1.6
Left kidney weight0.10.51.4-1.20.6-0.00.6
Right kidney weight0.10.41.4-1.20.20.40.2
Cocaine induced anxiety0.60.91.40.8-0.91.20.9
Post-drug Anxiety1.01.12.30.9-1.11.50.2
Baseline Anxiety0.10.10.2-0.40.20.0-0.3
Tail length8.733.946.4-6.66.8-6.51.9
Length with tail10.445.262.5-7.97.9-7.31.8
Length without tail3.912.721.4-4.64.2-3.30.9
Times rat made contact with spout0.60.61.5-0.40.4-0.9-1.2
Lifetime Intake1.11.32.3-0.80.6-1.4-1.5
Liver weight, left3.15.17.4-2.72.6-2.2-1.0
Liver weight, right1.32.33.3-1.81.7-1.41.0
Locomotor activity0.20.20.6-0.3-0.20.4-0.8
Locomotor testing distance0.20.30.6-0.6-0.40.8-0.3
Locomotor testing rearing0.30.61.3-1.1-0.10.3-1.1
Locomotion in novel chamber1.31.72.51.3-1.51.6-0.6
Locomotion in novel chamber post-restriction0.30.50.70.8-0.90.8-0.3
Fecal boli incidents, locomotor time 10.20.30.8-0.50.30.10.9
Change in fecal boli incidents, locomotor task0.30.30.91.0-0.10.30.6
Time >=10cm from walls, locomotor time 13.13.39.31.3-0.81.13.1
Bouts of movement, locomotor time 10.10.10.40.0-0.20.10.6
Total resting periods, locomotor time 10.40.40.80.5-0.90.60.5
Rest time, locomotor task time 10.50.61.0-0.90.4-1.0-0.5
Distance moved, locomotor task time 10.30.51.80.1-0.00.41.3
Vertical activity count, locomotor time 10.10.30.60.6-0.60.80.1
Time >=10cm from walls, locomotor time 21.52.27.3-0.60.8-0.72.7
Bouts of movement, locomotor time 20.91.52.51.3-1.61.3-0.4
Total resting periods, locomotor time 20.91.52.61.2-1.61.4-0.5
Rest time, locomotor task time 20.10.10.4-0.3-0.2-0.2-0.6
Distance moved, locomotor task time 20.50.52.0-0.20.10.31.4
Vertical activity count, locomotor time 20.20.30.70.8-0.60.4-0.2
Light reinforcement 11.02.38.8-0.0-0.70.4-3.0
Light reinforcement 20.61.01.7-0.91.0-1.3-0.4
Bone: marrow area3.78.011.4-3.43.0-3.21.0
Bone: maximum diameter0.40.70.9-0.90.8-0.90.8
Bone: maximum force4.37.711.1-3.33.1-3.2-0.3
Bone: maximum moment3.86.610.2-3.22.8-2.9-0.5
Mean time between licks in bursts0.30.82.40.5-0.60.3-1.6
Mean num. licks in bursts0.30.50.8-0.60.5-0.9-0.7
Cd content in liver0.70.71.0-0.90.9-1.0-0.6
Co content in liver0.00.00.00.1-0.10.1-0.1
Cu content in liver0.40.50.6-0.80.7-0.70.5
Fe content in liver1.11.42.3-1.31.3-1.5-0.1
K content in liver0.30.30.90.1-0.30.40.9
Mg content in liver0.20.20.80.20.00.20.9
Mn content in liver2.22.53.31.8-1.81.8-0.4
Na content in liver0.10.10.3-0.50.20.00.4
Rb content in liver0.81.01.71.1-1.01.30.1
Se content in liver0.00.00.10.00.2-0.2-0.0
Sr content in liver3.83.35.7-2.41.7-1.9-0.9
Zn content in liver0.70.81.1-1.00.9-1.1-0.3
Bone: minimum diameter0.81.52.0-1.41.3-1.40.5
Time in familiar zone, hab. session 10.70.71.20.9-0.60.5-1.1
Time in novel zone, hab. session 11.51.54.1-0.90.8-0.62.0
Total zone transitions, hab. session 10.60.91.20.8-0.71.11.0
Total locomotion distance, hab. session 10.60.92.5-0.60.6-0.51.6
Locomotion velocity, hab. session 10.71.01.1-1.01.1-1.10.9
Time in familiar zone, hab. session 20.50.61.11.1-0.60.60.7
Time in novel zone, hab. session 20.70.71.4-1.20.7-0.8-0.2
Total zone transitions, hab. session 20.10.20.50.30.2-0.3-0.7
Total locomotion distance, hab. session 21.52.04.0-1.21.5-2.0-0.3
Locomotion velocity, hab. session 21.52.03.7-1.31.4-1.9-0.6
Novel to familiar place preference ratio5.66.28.3-2.92.7-2.90.9
Novelty place preference5.55.98.0-2.82.6-2.80.9
Time in novel zone, NPP test5.45.77.4-2.72.6-2.71.2
Total zone transitions, NPP test0.20.30.60.8-0.40.5-0.4
Total locomotion distance, NPP test0.30.40.6-0.30.6-0.70.8
Locomotion velocity, NPP test0.10.20.3-0.40.4-0.60.0
Intraocular pressure1.11.62.61.3-1.61.4-0.3
Delta distance traveled before/after self-admin0.70.71.11.0-1.10.8-0.4
Delta ambulatory time before/after self-admin0.40.50.70.5-0.80.6-0.9
Parametrial fat weight0.20.41.60.0-0.10.2-1.2
Pavlov. Cond. lever latency0.60.81.31.0-0.80.5-1.1
Pavlov. Cond. magazine entry latency1.21.55.3-0.50.6-0.22.3
Pavlov. Cond. change in total contacts0.60.72.6-0.10.0-0.11.6
Pavlov. Cond. index score0.91.12.5-0.80.9-0.61.6
Pavlov. Cond. latency score1.01.22.7-0.90.9-0.61.6
Pavlov. Cond. lever contacts0.50.61.0-0.80.6-0.41.0
Pavlov. Cond. magazine entry number1.11.43.40.9-1.00.7-1.8
Pavlov. Cond. intertrial magazine entries0.70.81.7-0.51.1-1.3-0.3
Pavlov. Cond. lever-magazine prob. diff.0.70.92.7-0.60.6-0.31.6
Pavlov. Cond. response bias0.81.02.8-0.70.8-0.51.7
Pavlov. Cond. lever latency0.91.21.9-1.41.2-1.1-0.5
Pavlov. Cond. magazine entry latency0.40.50.90.9-0.70.6-0.4
Pavlov. Cond. change in total contacts0.91.53.61.0-0.61.01.9
Pavlov. Cond. index score0.50.71.21.1-0.80.80.5
Pavlov. Cond. latency score0.40.51.01.0-0.70.70.4
Pavlov. Cond. lever contacts0.81.21.61.3-1.11.00.9
Pavlov. Cond. magazine entry number0.00.00.0-0.2-0.10.10.1
Pavlov. Cond. intertrial magazine entries0.20.30.60.4-0.50.3-0.8
Pavlov. Cond. lever-magazine prob. diff.0.70.91.41.2-0.91.00.6
Pavlov. Cond. response bias0.30.40.50.7-0.60.60.7
Time in closed arm before self-admin2.12.75.6-2.41.7-1.20.8
Time in closed arm after self-admin0.40.41.2-0.0-0.20.61.1
Time in open arm before self-admin4.65.07.52.7-1.81.4-2.7
Time in open arm after self-admin0.91.01.5-0.51.1-1.01.2
Bone: periosteal estimation2.55.37.3-2.72.5-2.60.9
Bone: periosteal perimeter2.13.54.7-2.12.0-2.20.9
Bone: post-yield work1.42.02.8-1.61.5-1.7-0.6
Progressive ratio test 1 active lever presses0.20.20.5-0.1-0.1-0.7-0.5
Progressive ratio test 1 breakpoint0.20.20.7-0.30.1-0.8-0.3
Progressive ratio test 1 inactive lever presses1.72.58.60.7-0.9-0.0-2.9
Progressive ratio test 2 active lever presses0.40.50.7-0.40.5-0.9-0.8
Progressive ratio test 2 breakpoint0.40.40.6-0.40.4-0.8-0.8
Progressive ratio test 2 inactive lever presses0.50.91.9-0.90.3-0.8-1.4
Incentive Sensitization - Responses0.30.40.6-0.70.8-0.70.2
Incentive Sensitization - Breakpoint0.30.40.6-0.60.8-0.70.0
Sum of active levers in priming session hrs 5-62.82.64.5-1.61.8-2.10.1
Progressive ratio0.50.82.31.5-0.70.50.2
Food seeking constrained by brief footshock0.30.41.10.5-0.10.51.0
Seeking ratio, punishment vs. effort0.50.81.8-1.40.8-0.40.6
Retroperitoneal fat weight0.73.09.3-1.10.9-0.9-3.1
Reaction time number correct0.30.50.80.7-0.90.8-0.5
Reaction time mean minus median1.84.56.3-2.42.4-2.5-0.1
Reaction time mean minus median AUC1.12.94.0-1.92.0-2.00.4
Reaction time num false alarms2.43.45.51.6-2.01.3-2.4
Reaction time num false alarms AUC2.43.86.41.8-2.01.2-2.5
Reaction time trials correct on left0.30.50.80.7-0.90.8-0.5
Reaction time trials on left0.20.40.60.6-0.80.6-0.6
Reaction time mean4.77.512.3-2.53.3-3.50.7
Reaction time mean AUC4.47.112.0-2.43.2-3.50.4
Median of all reaction times4.56.310.5-2.13.1-3.21.0
Reaction time omissions1.72.53.7-1.41.9-1.9-0.7
Reaction time false alarm rate1.31.83.41.2-1.40.8-1.8
Reaction time premature initiation rate2.63.65.31.2-1.62.32.2
Reaction time premature initiations2.13.76.41.5-1.92.51.5
Std. dev. reaction times3.46.29.5-2.52.9-3.10.5
Reaction time trials completed0.20.40.60.6-0.80.6-0.6
Reaction time trials AUC0.20.50.60.7-0.80.7-0.6
Run reversals in cocaine runway, females0.20.20.30.60.1-0.40.3
Run reversals in cocaine runway, males0.30.30.5-0.3-0.40.60.7
Latency to leave start box in cocaine runway3.33.75.62.0-2.42.0-1.0
Latency to leave start box in cocaine runway, F2.32.74.21.7-2.01.8-0.5
Latency to leave start box in cocaine runway, M2.12.02.91.5-1.71.6-0.7
Std. dev. time between licks in bursts0.91.21.70.9-1.31.2-0.8
Total sessions with >9 infusions0.50.62.30.2-0.4-0.3-1.5
Short access day 1 total inactive lever presses0.30.41.70.1-0.1-0.3-1.3
Short access day 10 total inactive lever presses0.20.41.40.2-0.40.3-1.2
Short access day 1 total infusions0.70.92.6-0.60.5-0.7-1.6
Short access day 10 total infusions1.31.64.2-0.70.9-2.1-1.0
Short access total infusions0.60.71.6-0.40.3-1.0-1.3
Short access day 1 locomotion0.30.40.90.10.0-0.7-1.0
Short access day 10 total locomotion0.50.91.80.8-0.90.4-1.4
Short access total locomotion1.01.24.20.6-0.6-0.2-2.0
One hour access (0.3 mA shock)1.51.72.4-1.41.0-1.6-1.3
Compulsive drug intake0.70.81.50.6-1.01.2-0.7
One hour access (shock baseline)1.42.24.6-1.51.4-2.1-0.5
Social response proportion2.02.24.1-1.52.0-1.60.2
Social responses0.70.91.8-0.61.3-0.9-0.8
Social time0.71.01.7-0.91.3-0.51.1
Soleus weight0.00.10.2-0.50.1-0.2-0.1
Bone: stiffness3.96.39.1-2.72.8-3.0-0.9
Tibialis anterior weight0.72.22.91.2-1.61.5-1.7
Time to tail flick, vehicle, before self-admin0.30.30.6-0.80.5-0.5-0.3
Time to tail flick, vehicle, after self-admin0.20.30.4-0.60.6-0.50.4
Time to tail flick, test, before self-admin0.40.40.80.3-0.90.5-0.6
Time to tail flick, test, after self-admin0.80.81.00.8-0.81.0-1.0
Delta time to tail flick, vehicle, before/after SA0.00.00.1-0.1-0.20.2-0.2
Delta time to tail flick, test, before/after SA0.20.20.30.5-0.10.50.4
Tibia length4.913.419.0-4.44.3-4.00.4
Ambulatory time before self-admin1.01.53.1-0.51.8-1.60.4
Ambulatory time after self-admin0.20.20.80.9-0.1-0.0-0.2
Bone: tissue strength2.92.94.8-2.21.6-1.6-1.3
Total heroin consumption0.91.02.3-0.41.0-1.5-0.7
Bone: trabecular number1.62.73.8-2.01.8-1.8-0.5
Bone: trabecular spacing0.91.11.51.0-0.91.21.1
Bone: trabecular thickness0.81.01.5-1.21.1-1.20.1
Bone: trabecular tissue density0.40.61.70.40.2-0.7-1.3
Water consumed over 24 hours0.40.62.00.1-0.50.1-1.4
Number of responses in last shaping day0.30.41.2-0.4-0.3-0.1-1.1