St13

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 pVTA mRNA stability St13 0.12 0.07 4.9e-04 0.06 0.04 0.08 0.04 1.7e-03 1.2e-02 2.1e-04 5.9e-03
2 Adipose gene expression St13 0.03 0.02 3.2e-03 0.02 0.02 0.01 0.02 1.7e-03 5.5e-03 4.2e-02 6.2e-03
3 Liver gene expression St13 0.22 0.11 4.6e-12 0.09 0.09 0.09 0.08 6.9e-10 1.6e-10 5.3e-10 1.9e-09

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.30.50.8-0.9-0.3-0.8
Area under the delay curve0.50.50.7-0.6-0.70.8
BMI with tail0.41.12.31.5-1.1-0.3
BMI without tail0.51.02.5-0.70.0-1.6
Body weight0.72.96.32.5-1.40.4
Weight adjusted by age0.80.91.10.90.91.1
Bone surface0.10.20.4-0.3-0.60.4
Bone volume0.10.10.2-0.3-0.5-0.2
Breakpoint value in progressive ratio session0.50.50.7-0.7-0.5-0.9
Number of licking bursts0.40.51.1-0.40.51.1
Context. condit. distance diff. score2.42.97.12.70.90.8
Locomotion velocity, session 10.80.92.10.3-0.81.4
Locomotion distance, session 10.60.81.4-1.0-0.31.2
Locomotion velocity, session 20.10.20.40.3-0.60.0
Locomotion distance, session 21.11.52.7-1.6-1.40.2
Locomotion velocity, session 31.01.21.90.91.41.0
Locomotion distance, session 31.71.93.00.01.71.6
Stereotopy head waving bouts, day 30.60.82.00.5-1.4-0.2
Stereotopy head waving duration, day 31.11.32.51.0-1.6-0.6
Locomotion velocity, session 70.30.30.40.70.30.6
Locomotion distance, session 70.20.30.50.2-0.70.6
Stereotopy head waving bouts, day 70.70.82.21.50.30.3
Stereotopy head waving duration, day 70.70.81.61.30.9-0.3
Locomotion velocity, session 81.11.42.11.5-1.10.9
Locomotion distance, session 80.20.40.70.80.60.2
Degree of sensitization distance1.91.93.60.6-1.9-1.3
Degree of sensitization stereotypy1.01.12.21.50.80.7
Conditioned locomotion0.10.10.40.60.10.1
Cocaine response after cond. corrected0.10.10.2-0.3-0.5-0.2
Cocaine response after cond. not corrected0.30.30.5-0.6-0.2-0.7
Cocaine response before conditioning0.40.50.6-0.50.7-0.8
Saline control response0.60.82.1-0.51.4-0.3
Bone: connectivity density0.10.20.2-0.4-0.5-0.3
Bone: cortical apparent density0.71.01.8-0.21.31.0
Bone: cortical area0.81.22.71.0-1.60.1
Bone: cortical porosity0.80.81.8-0.3-0.7-1.4
Bone: cortical porosity0.91.01.60.1-1.2-1.2
Bone: cortical thickness0.30.51.10.5-1.00.5
Bone: cortical thickness0.80.91.90.6-1.40.7
Bone: cortical tissue density0.81.01.9-0.11.41.1
Condit. Reinf. active minus inactive responses0.10.10.20.0-0.20.4
Condit. Reinf. active-inactive response ratio0.40.40.60.80.40.7
Condit. Reinf. active responses0.50.61.4-1.20.4-0.6
Condit. Reinf. inactive responses1.92.24.4-2.10.7-1.4
Incentive salience index mean0.00.10.1-0.3-0.10.2
Condit. Reinf. lever presses0.30.40.9-0.9-0.1-0.5
Condit. Reinf. active minus inactive responses0.81.01.80.3-1.11.4
Condit. Reinf. active-inactive response ratio1.01.11.90.7-1.40.9
Condit. Reinf. active responses1.01.32.40.9-0.91.6
Condit. Reinf. inactive responses0.81.01.91.0-0.31.4
Condit. Reinf. lever presses0.00.00.1-0.1-0.30.1
Condit. Reinf. lever reinforcers received0.60.91.40.7-0.91.2
Conditioned reinforcement - actives1.61.64.01.0-0.02.0
Conditioned reinforcement - inactives0.60.71.0-1.0-1.00.3
Conditioned locomotion1.82.12.51.4-1.61.4
Patch foraging indifference point 0 sec0.40.71.0-0.9-0.4-1.0
Patch foraging indifference point AUC1.11.33.40.4-0.51.8
Delay disc. indifference point, 0s delay1.11.21.8-0.4-1.3-1.3
Delay disc. indifference point, 16s delay0.50.51.0-1.0-0.40.6
Delay disc. indifference point, 2s delay0.40.50.9-0.3-1.00.6
Delay disc. indifference point, 24s delay2.12.05.10.4-0.82.3
Delay disc. indifference point, 4s delay0.70.81.5-0.8-1.20.5
Delay disc. indifference point, 8s delay0.40.40.7-0.8-0.30.6
Indifference point function ln k0.40.61.01.00.7-0.6
Indifference point function log k0.40.61.01.00.7-0.6
Patch foraging total patch changes 0 sec0.50.81.2-1.1-0.4-1.1
Patch foraging total patch changes 12 sec0.20.30.70.2-0.80.2
Patch foraging total patch changes 18 sec0.91.12.9-0.6-1.7-0.3
Patch foraging total patch changes 24 sec0.20.30.6-0.7-0.5-0.0
Patch foraging total patch changes 6 sec1.01.43.5-0.9-1.9-0.1
Patch foraging time to switch 0 sec1.11.73.9-1.0-0.5-2.0
Patch foraging water rate 0 sec0.00.10.1-0.3-0.30.1
Patch foraging water rate 12 sec0.30.40.6-0.70.8-0.4
Patch foraging water rate 18 sec0.20.20.7-0.8-0.2-0.2
Patch foraging water rate 24 sec0.00.00.10.1-0.0-0.3
Patch foraging water rate 6 sec0.81.13.0-0.51.70.4
Seeking ratio, delayed vs. immediate footshock0.70.81.8-1.30.4-0.7
Distance traveled before self-admin0.10.10.2-0.4-0.4-0.3
Distance traveled after self-admin1.01.13.2-0.3-1.80.0
Extensor digitorum longus weight0.31.42.0-1.30.6-1.4
Bone: elastic displacement0.10.10.10.20.20.3
Bone: elastic work1.11.43.01.0-1.7-0.6
Bone: endosteal estimation0.40.92.00.5-1.4-0.6
Bone: endosteal perimeter0.40.81.21.1-1.0-0.4
Epididymis fat weight1.02.46.42.5-0.00.9
Delta time in closed arm before/after self-admin1.51.42.31.5-0.41.4
Delta time in open arm before/after self-admin1.21.22.3-1.50.2-1.1
Diff in mean of infusions in LGA sessions0.30.40.50.3-0.70.7
Delay discount exponential model param0.60.61.00.70.6-1.0
Extinction: sum of active levers before priming0.20.20.5-0.2-0.70.1
Active lever presses in extinction session 60.20.20.4-0.3-0.6-0.4
Bone: final force1.93.16.31.6-2.50.6
Bone: final moment2.03.37.11.6-2.70.6
Food consumed during 24 hour testing period1.51.83.11.5-1.80.4
Glucose1.01.52.8-1.2-0.2-1.7
Heart weight0.60.81.10.7-1.0-1.0
Delay discount hyperbolic model param0.60.60.80.70.7-0.9
Intermittent access intake day 1-15 change0.40.40.9-0.20.90.6
Intermittent access intake escalation0.30.30.6-0.50.80.2
Intermittent access intake escalation 20.20.20.2-0.50.4-0.3
Intermitt. access day 1 inactive lever presses0.60.61.5-0.5-1.2-0.5
Intermitt. access day 15 inactive lever presses0.70.71.10.3-1.11.0
Intermitt. access escalation Index0.00.00.1-0.00.20.3
Intermittent access day 1 total infusions0.70.81.90.6-1.40.5
Intermittent access day 15 total infusions0.30.30.5-0.2-0.70.6
Intermittent access terminal intake (last 3 days)0.10.10.40.1-0.20.6
Intermittent access total infusions0.50.61.70.2-1.30.3
Intermittent access day 1 locomotion0.40.51.40.1-1.2-0.2
Intermittent access day 15 total locomotion0.20.30.70.1-0.80.2
Intermittent access total locomotion0.70.82.30.4-1.50.1
Intermittent access standard deviation0.40.41.00.3-1.0-0.4
Left kidney weight5.816.336.96.1-2.12.8
Right kidney weight6.117.134.85.9-2.92.8
Cocaine induced anxiety0.60.71.00.8-1.0-0.7
Post-drug Anxiety0.30.40.70.6-0.8-0.4
Baseline Anxiety0.40.40.6-0.70.70.3
Tail length0.20.60.6-0.80.6-0.8
Length with tail0.31.12.61.6-0.30.9
Length without tail1.83.96.72.6-1.02.0
Times rat made contact with spout1.11.32.01.1-0.81.4
Lifetime Intake1.11.23.10.6-1.80.5
Liver weight, left0.40.61.11.10.70.2
Liver weight, right1.82.95.22.31.80.7
Locomotor activity0.50.71.81.4-0.50.2
Locomotor testing distance0.10.10.30.10.60.3
Locomotor testing rearing0.20.41.01.0-0.10.3
Locomotion in novel chamber2.22.77.0-1.02.6-0.1
Locomotion in novel chamber post-restriction0.30.30.6-0.50.8-0.4
Fecal boli incidents, locomotor time 10.70.81.8-0.7-1.3-0.3
Change in fecal boli incidents, locomotor task3.53.35.71.81.02.4
Time >=10cm from walls, locomotor time 10.30.30.90.3-0.9-0.2
Bouts of movement, locomotor time 10.70.71.41.2-0.60.7
Total resting periods, locomotor time 10.50.50.80.9-0.80.5
Rest time, locomotor task time 10.40.51.00.6-1.00.1
Distance moved, locomotor task time 10.30.30.60.40.8-0.2
Vertical activity count, locomotor time 10.20.20.5-0.4-0.2-0.7
Time >=10cm from walls, locomotor time 20.10.20.3-0.2-0.6-0.2
Bouts of movement, locomotor time 20.10.10.30.5-0.10.2
Total resting periods, locomotor time 20.20.20.20.5-0.40.3
Rest time, locomotor task time 20.20.30.7-0.1-0.30.8
Distance moved, locomotor task time 20.20.20.30.40.5-0.4
Vertical activity count, locomotor time 20.20.20.40.2-0.5-0.6
Light reinforcement 10.10.10.3-0.5-0.2-0.1
Light reinforcement 20.50.60.90.91.0-0.1
Bone: marrow area0.41.02.20.5-1.5-0.6
Bone: maximum diameter1.73.05.71.8-2.40.1
Bone: maximum force2.54.29.71.7-3.10.5
Bone: maximum moment2.64.510.41.7-3.20.5
Mean time between licks in bursts0.50.71.1-1.00.7-0.7
Mean num. licks in bursts0.80.92.21.5-0.70.4
Cd content in liver0.50.61.11.10.70.4
Co content in liver0.20.20.30.5-0.60.1
Cu content in liver1.92.25.0-2.20.3-1.3
Fe content in liver0.91.12.4-0.8-0.6-1.6
K content in liver0.10.10.3-0.5-0.2-0.1
Mg content in liver0.50.61.1-1.0-0.5-0.6
Mn content in liver0.70.81.10.70.91.1
Na content in liver1.41.53.1-1.80.2-1.1
Rb content in liver0.20.20.5-0.1-0.70.2
Se content in liver0.91.02.8-0.51.70.1
Sr content in liver0.70.61.6-0.51.30.1
Zn content in liver0.40.50.9-0.90.6-0.4
Bone: minimum diameter0.40.71.70.4-1.3-0.6
Time in familiar zone, hab. session 10.90.81.50.4-0.91.2
Time in novel zone, hab. session 10.80.82.2-0.00.5-1.5
Total zone transitions, hab. session 11.52.13.0-1.01.71.5
Total locomotion distance, hab. session 11.31.83.6-1.01.90.9
Locomotion velocity, hab. session 11.01.42.1-1.21.50.7
Time in familiar zone, hab. session 20.70.72.00.11.4-0.0
Time in novel zone, hab. session 20.60.61.6-0.1-1.30.0
Total zone transitions, hab. session 20.60.71.0-0.6-0.91.0
Total locomotion distance, hab. session 20.40.61.3-1.1-0.6-0.1
Locomotion velocity, hab. session 20.60.92.2-1.5-0.6-0.2
Novel to familiar place preference ratio0.80.82.11.50.10.5
Novelty place preference1.41.43.51.90.30.8
Time in novel zone, NPP test1.71.74.32.10.20.9
Total zone transitions, NPP test1.21.72.5-1.11.11.6
Total locomotion distance, NPP test0.40.50.9-1.00.40.7
Locomotion velocity, NPP test0.60.81.9-1.40.70.4
Intraocular pressure0.40.60.90.9-0.01.0
Delta distance traveled before/after self-admin0.80.91.20.6-1.11.0
Delta ambulatory time before/after self-admin1.11.22.20.5-1.51.1
Parametrial fat weight0.00.10.20.50.10.2
Pavlov. Cond. lever latency0.30.40.90.9-0.30.4
Pavlov. Cond. magazine entry latency0.20.20.3-0.6-0.50.1
Pavlov. Cond. change in total contacts0.50.61.1-0.8-1.10.2
Pavlov. Cond. index score0.10.10.3-0.3-0.60.2
Pavlov. Cond. latency score0.10.10.2-0.4-0.4-0.0
Pavlov. Cond. lever contacts0.50.61.4-1.2-0.0-0.6
Pavlov. Cond. magazine entry number0.10.10.40.10.1-0.6
Pavlov. Cond. intertrial magazine entries0.40.51.0-1.0-0.6-0.3
Pavlov. Cond. lever-magazine prob. diff.0.10.10.1-0.4-0.30.3
Pavlov. Cond. response bias0.10.20.3-0.6-0.40.0
Pavlov. Cond. lever latency0.50.71.20.90.11.1
Pavlov. Cond. magazine entry latency1.11.32.2-1.5-0.9-1.0
Pavlov. Cond. change in total contacts1.11.53.9-0.3-2.0-0.7
Pavlov. Cond. index score0.50.71.2-1.1-0.5-0.8
Pavlov. Cond. latency score0.60.81.4-1.2-0.6-0.8
Pavlov. Cond. lever contacts0.40.61.2-0.8-0.0-1.1
Pavlov. Cond. magazine entry number0.30.40.50.70.70.4
Pavlov. Cond. intertrial magazine entries0.81.11.61.3-0.81.0
Pavlov. Cond. lever-magazine prob. diff.0.70.91.4-1.2-0.4-1.0
Pavlov. Cond. response bias0.50.70.9-0.8-0.7-1.0
Time in closed arm before self-admin6.87.711.4-3.4-1.0-3.3
Time in closed arm after self-admin0.80.81.60.2-1.3-0.8
Time in open arm before self-admin1.41.62.01.21.41.1
Time in open arm after self-admin0.91.02.0-0.81.4-0.5
Bone: periosteal estimation0.81.63.70.9-1.9-0.5
Bone: periosteal perimeter1.11.82.81.5-1.7-0.2
Bone: post-yield work1.01.44.20.1-2.00.3
Progressive ratio test 1 active lever presses1.01.02.50.4-1.60.6
Progressive ratio test 1 breakpoint0.60.61.00.4-1.00.8
Progressive ratio test 1 inactive lever presses0.60.71.4-0.3-1.2-0.7
Progressive ratio test 2 active lever presses0.80.81.90.2-0.71.4
Progressive ratio test 2 breakpoint0.80.91.50.4-1.01.2
Progressive ratio test 2 inactive lever presses0.40.51.0-1.0-0.70.2
Incentive Sensitization - Responses0.50.51.00.10.61.0
Incentive Sensitization - Breakpoint0.60.61.30.30.51.2
Sum of active levers in priming session hrs 5-60.30.20.5-0.40.0-0.7
Progressive ratio0.70.81.0-1.0-0.6-1.0
Food seeking constrained by brief footshock0.80.91.01.0-0.91.0
Seeking ratio, punishment vs. effort0.81.01.41.2-0.41.2
Retroperitoneal fat weight1.85.915.43.9-0.51.4
Reaction time number correct0.91.33.1-0.41.80.7
Reaction time mean minus median0.20.20.6-0.10.2-0.8
Reaction time mean minus median AUC0.20.30.40.50.4-0.6
Reaction time num false alarms0.30.40.8-0.50.5-0.9
Reaction time num false alarms AUC0.30.50.6-0.70.8-0.6
Reaction time trials correct on left0.91.33.1-0.41.80.7
Reaction time trials on left0.91.43.3-0.51.80.7
Reaction time mean0.40.61.2-0.70.4-1.1
Reaction time mean AUC0.30.40.6-0.60.4-0.8
Median of all reaction times0.50.61.0-0.90.3-1.0
Reaction time omissions0.20.30.6-0.60.8-0.0
Reaction time false alarm rate0.30.41.0-0.4-0.0-1.0
Reaction time premature initiation rate0.91.22.4-0.6-1.5-1.0
Reaction time premature initiations0.20.30.4-0.5-0.7-0.4
Std. dev. reaction times0.10.20.40.10.2-0.7
Reaction time trials completed0.91.43.3-0.51.80.7
Reaction time trials AUC0.71.02.4-0.41.60.6
Run reversals in cocaine runway, females0.60.61.5-0.51.20.3
Run reversals in cocaine runway, males1.61.53.11.20.21.7
Latency to leave start box in cocaine runway0.40.50.90.90.7-0.3
Latency to leave start box in cocaine runway, F0.20.20.40.10.6-0.6
Latency to leave start box in cocaine runway, M0.70.61.81.30.30.2
Std. dev. time between licks in bursts0.91.12.4-1.5-0.7-0.6
Total sessions with >9 infusions1.82.02.81.4-1.71.2
Short access day 1 total inactive lever presses1.82.05.9-0.1-2.40.5
Short access day 10 total inactive lever presses0.10.10.1-0.3-0.30.1
Short access day 1 total infusions0.70.81.30.7-1.10.7
Short access day 10 total infusions1.41.53.41.0-1.9-0.1
Short access total infusions1.82.14.51.2-2.10.5
Short access day 1 locomotion0.20.20.50.1-0.7-0.3
Short access day 10 total locomotion0.91.02.3-0.7-0.2-1.5
Short access total locomotion0.80.92.00.8-1.4-0.2
One hour access (0.3 mA shock)0.00.10.1-0.4-0.10.2
Compulsive drug intake0.80.81.6-0.40.81.3
One hour access (shock baseline)0.20.20.40.1-0.4-0.7
Social response proportion1.11.23.2-0.4-0.5-1.8
Social responses0.00.10.1-0.3-0.20.2
Social time0.60.82.0-1.40.0-0.6
Soleus weight0.20.51.5-0.1-0.31.2
Bone: stiffness1.72.77.20.8-2.7-0.3
Tibialis anterior weight0.31.12.6-1.6-0.3-0.7
Time to tail flick, vehicle, before self-admin0.10.10.20.1-0.50.3
Time to tail flick, vehicle, after self-admin0.80.81.6-1.20.7-0.6
Time to tail flick, test, before self-admin0.10.10.30.10.30.6
Time to tail flick, test, after self-admin0.50.61.2-1.10.5-0.4
Delta time to tail flick, vehicle, before/after SA0.50.50.8-0.80.2-0.9
Delta time to tail flick, test, before/after SA1.31.22.4-1.50.8-0.7
Tibia length0.82.32.51.6-1.51.5
Ambulatory time before self-admin0.10.10.3-0.50.20.1
Ambulatory time after self-admin0.60.71.0-1.0-1.00.4
Bone: tissue strength0.10.10.10.3-0.20.3
Total heroin consumption0.40.50.70.6-0.80.6
Bone: trabecular number0.10.20.50.10.70.1
Bone: trabecular spacing1.62.04.41.1-2.10.7
Bone: trabecular thickness0.81.01.5-0.90.8-1.2
Bone: trabecular tissue density1.31.82.7-1.6-0.2-1.7
Water consumed over 24 hours0.91.11.41.0-1.01.2
Number of responses in last shaping day2.42.53.9-1.4-2.0-1.2