Spink8

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 IC gene expression Spink8 0.06 0.05 3.8e-03 0.07 0.04 0.05 0.06 6.2e-04 6.3e-03 3.2e-03 1.6e-03
2 IC intron excision ratio chr8_118700971_118702399 0.09 0.08 7.5e-03 0.02 -0.01 0 0.01 6.0e-02 8.3e-01 3.2e-01 1.7e-01
3 OFC gene expression Spink8 0.27 0.15 2.5e-03 0.12 0.08 0.14 0.12 1.1e-03 4.9e-03 2.7e-04 1.0e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.30.61.8-0.0-0.01.3
Area under the delay curve1.92.22.61.5-1.41.6
BMI with tail0.10.30.7-0.80.3-0.4
BMI without tail0.41.32.4-1.51.2-0.2
Body weight4.118.125.4-5.04.4-3.1
Weight adjusted by age0.30.41.30.0-0.0-1.1
Bone surface0.20.40.70.5-0.70.8
Bone volume0.20.41.10.3-0.41.1
Breakpoint value in progressive ratio session0.20.20.30.4-0.30.6
Number of licking bursts0.30.60.90.7-0.5-1.0
Context. condit. distance diff. score0.00.00.00.1-0.2-0.2
Locomotion velocity, session 10.10.10.20.2-0.20.4
Locomotion distance, session 10.60.71.4-1.20.90.1
Locomotion velocity, session 20.30.30.60.5-0.80.1
Locomotion distance, session 20.20.30.70.0-0.40.9
Locomotion velocity, session 30.50.51.4-0.50.11.2
Locomotion distance, session 31.41.52.50.8-1.11.6
Stereotopy head waving bouts, day 30.80.92.7-0.10.1-1.6
Stereotopy head waving duration, day 30.60.71.7-0.30.5-1.3
Locomotion velocity, session 70.40.41.1-0.30.31.1
Locomotion distance, session 71.21.52.41.0-1.11.5
Stereotopy head waving bouts, day 70.00.00.00.0-0.00.1
Stereotopy head waving duration, day 70.20.20.4-0.60.6-0.2
Locomotion velocity, session 80.20.20.4-0.60.30.5
Locomotion distance, session 80.30.51.2-0.50.01.1
Degree of sensitization distance1.01.01.4-1.01.2-0.8
Degree of sensitization stereotypy0.10.20.4-0.20.20.6
Conditioned locomotion3.03.53.81.9-1.81.8
Cocaine response after cond. corrected1.11.33.6-0.40.5-1.9
Cocaine response after cond. not corrected2.12.53.9-1.31.3-2.0
Cocaine response before conditioning0.81.01.7-1.31.10.3
Saline control response0.60.81.2-0.91.10.5
Bone: connectivity density0.81.33.20.7-0.61.8
Bone: cortical apparent density0.20.30.50.4-0.50.7
Bone: cortical area0.50.81.50.6-0.7-1.2
Bone: cortical porosity0.91.02.60.4-0.31.6
Bone: cortical porosity0.90.92.60.4-0.21.6
Bone: cortical thickness0.71.23.5-0.20.0-1.9
Bone: cortical thickness0.00.00.10.1-0.1-0.3
Bone: cortical tissue density0.20.30.50.4-0.50.7
Condit. Reinf. active minus inactive responses0.50.51.3-0.20.4-1.1
Condit. Reinf. active-inactive response ratio0.91.02.3-0.40.7-1.5
Condit. Reinf. active responses0.10.10.40.1-0.1-0.6
Condit. Reinf. inactive responses0.60.70.90.8-1.00.8
Incentive salience index mean0.10.10.20.2-0.2-0.5
Condit. Reinf. lever presses1.11.62.21.3-1.50.8
Condit. Reinf. active minus inactive responses1.41.92.5-1.61.4-1.1
Condit. Reinf. active-inactive response ratio1.41.72.1-1.41.3-1.2
Condit. Reinf. active responses1.31.82.4-1.51.5-1.0
Condit. Reinf. inactive responses0.00.00.10.3-0.20.1
Condit. Reinf. lever presses1.92.73.7-1.91.7-1.2
Condit. Reinf. lever reinforcers received1.62.22.7-1.71.6-1.1
Conditioned reinforcement - actives1.42.33.41.8-1.80.6
Conditioned reinforcement - inactives1.52.13.41.6-1.8-0.7
Conditioned locomotion0.40.51.00.6-0.51.0
Patch foraging indifference point 0 sec0.71.32.0-1.41.40.1
Patch foraging indifference point AUC0.20.20.7-0.20.10.8
Delay disc. indifference point, 0s delay0.00.00.1-0.0-0.10.2
Delay disc. indifference point, 16s delay1.01.11.31.0-1.01.1
Delay disc. indifference point, 2s delay0.30.30.40.6-0.50.5
Delay disc. indifference point, 24s delay1.01.11.31.1-1.01.2
Delay disc. indifference point, 4s delay1.51.62.11.4-1.30.9
Delay disc. indifference point, 8s delay2.02.42.51.5-1.51.6
Indifference point function ln k0.20.30.50.5-0.70.4
Indifference point function log k0.20.30.50.5-0.70.4
Patch foraging total patch changes 0 sec0.81.42.2-1.41.5-0.2
Patch foraging total patch changes 12 sec0.70.91.3-1.11.2-0.4
Patch foraging total patch changes 18 sec1.32.03.4-1.61.8-0.1
Patch foraging total patch changes 24 sec1.62.83.8-1.91.9-1.0
Patch foraging total patch changes 6 sec0.30.40.6-0.50.60.8
Patch foraging time to switch 0 sec0.20.30.60.5-0.4-0.7
Patch foraging water rate 0 sec0.10.20.3-0.50.5-0.3
Patch foraging water rate 12 sec0.10.30.4-0.60.6-0.4
Patch foraging water rate 18 sec0.20.20.6-0.30.1-0.8
Patch foraging water rate 24 sec0.81.11.1-1.01.1-1.0
Patch foraging water rate 6 sec0.30.50.8-0.90.80.0
Seeking ratio, delayed vs. immediate footshock2.32.83.01.6-1.71.7
Distance traveled before self-admin0.30.40.50.7-0.6-0.6
Distance traveled after self-admin0.20.30.50.7-0.5-0.2
Extensor digitorum longus weight0.10.30.60.7-0.70.1
Bone: elastic displacement0.20.30.7-0.20.3-0.8
Bone: elastic work0.40.61.0-0.60.5-1.0
Bone: endosteal estimation0.10.20.5-0.10.20.7
Bone: endosteal perimeter1.02.12.81.6-1.71.0
Epididymis fat weight0.31.11.5-1.21.1-0.7
Delta time in closed arm before/after self-admin0.70.60.90.7-0.71.0
Delta time in open arm before/after self-admin0.30.30.4-0.60.6-0.5
Diff in mean of infusions in LGA sessions0.91.13.20.00.1-1.8
Delay discount exponential model param2.12.42.6-1.51.5-1.6
Extinction: sum of active levers before priming0.20.30.60.4-0.20.8
Active lever presses in extinction session 60.20.20.4-0.20.30.7
Bone: final force1.32.03.4-1.21.1-1.9
Bone: final moment1.62.54.4-1.41.2-2.1
Food consumed during 24 hour testing period1.21.72.2-1.51.3-1.1
Glucose0.81.32.0-1.41.30.4
Heart weight2.84.38.2-1.61.5-2.9
Delay discount hyperbolic model param2.32.52.7-1.61.6-1.6
Intermittent access intake day 1-15 change0.51.01.71.2-1.3-0.3
Intermittent access intake escalation0.71.52.41.4-1.6-0.3
Intermittent access intake escalation 20.40.40.90.4-0.5-1.0
Intermitt. access day 1 inactive lever presses0.10.30.70.2-0.3-0.8
Intermitt. access day 15 inactive lever presses0.81.72.41.5-1.5-0.6
Intermitt. access escalation Index0.30.41.10.2-0.11.0
Intermittent access day 1 total infusions0.30.40.70.9-0.80.1
Intermittent access day 15 total infusions1.42.13.31.7-1.8-0.0
Intermittent access terminal intake (last 3 days)1.21.52.41.5-1.50.2
Intermittent access total infusions1.72.03.01.7-1.70.1
Intermittent access day 1 locomotion0.00.00.1-0.10.20.2
Intermittent access day 15 total locomotion0.40.70.80.8-0.90.7
Intermittent access total locomotion1.01.21.41.1-1.21.0
Intermittent access standard deviation0.61.23.60.0-0.2-1.9
Left kidney weight0.52.43.8-2.01.7-0.6
Right kidney weight0.20.91.5-1.21.2-0.0
Cocaine induced anxiety0.20.30.9-0.20.2-1.0
Post-drug Anxiety0.00.00.10.0-0.0-0.4
Baseline Anxiety0.40.41.00.4-0.41.0
Tail length3.915.420.3-4.54.5-2.4
Length with tail7.733.641.5-6.46.3-4.5
Length without tail6.320.424.3-4.94.7-3.8
Times rat made contact with spout0.70.80.9-0.90.8-0.9
Lifetime Intake1.82.23.21.7-1.80.6
Liver weight, left0.50.81.4-1.11.20.1
Liver weight, right1.11.92.8-1.61.7-0.3
Locomotor activity4.57.19.7-2.93.1-1.8
Locomotor testing distance3.35.98.2-2.62.9-1.6
Locomotor testing rearing0.00.10.10.10.3-0.3
Locomotion in novel chamber0.20.20.60.3-0.3-0.8
Locomotion in novel chamber post-restriction0.30.60.9-0.80.90.4
Fecal boli incidents, locomotor time 10.30.40.7-0.50.6-0.8
Change in fecal boli incidents, locomotor task0.00.00.10.0-0.20.3
Time >=10cm from walls, locomotor time 10.50.51.40.3-0.21.2
Bouts of movement, locomotor time 10.00.00.0-0.20.2-0.2
Total resting periods, locomotor time 10.00.00.0-0.10.1-0.1
Rest time, locomotor task time 10.70.80.90.9-0.81.0
Distance moved, locomotor task time 11.32.02.2-1.41.3-1.5
Vertical activity count, locomotor time 10.41.01.3-1.21.0-0.8
Time >=10cm from walls, locomotor time 20.81.21.7-1.31.3-0.4
Bouts of movement, locomotor time 20.20.30.70.2-0.1-0.8
Total resting periods, locomotor time 20.10.20.30.4-0.4-0.5
Rest time, locomotor task time 20.20.20.30.4-0.30.6
Distance moved, locomotor task time 21.31.51.8-1.41.1-1.2
Vertical activity count, locomotor time 20.10.10.2-0.40.2-0.2
Light reinforcement 10.40.91.3-1.11.0-0.7
Light reinforcement 20.40.71.90.1-0.41.4
Bone: marrow area0.10.20.5-0.10.20.7
Bone: maximum diameter0.40.80.90.9-1.0-0.7
Bone: maximum force0.50.91.0-1.00.9-1.0
Bone: maximum moment0.61.11.4-1.00.9-1.2
Mean time between licks in bursts0.61.52.01.4-1.40.6
Mean num. licks in bursts0.60.91.4-1.21.00.5
Cd content in liver0.10.20.40.2-0.20.6
Co content in liver1.11.32.01.4-1.3-0.5
Cu content in liver3.34.05.2-2.22.3-1.3
Fe content in liver1.51.92.7-1.01.4-1.6
K content in liver0.20.10.3-0.50.3-0.3
Mg content in liver0.80.81.60.8-1.20.4
Mn content in liver0.10.10.2-0.3-0.20.5
Na content in liver0.50.60.9-0.60.9-0.7
Rb content in liver0.80.91.7-0.41.0-1.3
Se content in liver0.10.10.2-0.40.2-0.2
Sr content in liver0.20.20.2-0.3-0.40.5
Zn content in liver1.71.82.7-1.61.5-0.6
Bone: minimum diameter0.51.01.61.1-1.20.4
Time in familiar zone, hab. session 11.00.91.81.3-1.0-0.1
Time in novel zone, hab. session 10.60.61.0-1.00.9-0.4
Total zone transitions, hab. session 10.40.51.0-1.00.70.3
Total locomotion distance, hab. session 10.30.40.6-0.80.60.2
Locomotion velocity, hab. session 10.30.40.7-0.80.60.4
Time in familiar zone, hab. session 20.70.71.01.0-0.9-0.6
Time in novel zone, hab. session 20.20.20.4-0.20.30.6
Total zone transitions, hab. session 20.00.10.2-0.4-0.00.1
Total locomotion distance, hab. session 20.30.40.8-0.90.70.2
Locomotion velocity, hab. session 20.30.30.6-0.80.60.3
Novel to familiar place preference ratio1.51.63.1-0.91.01.8
Novelty place preference1.61.83.5-0.91.01.9
Time in novel zone, NPP test1.51.62.5-1.01.11.6
Total zone transitions, NPP test1.52.24.5-2.11.50.1
Total locomotion distance, NPP test0.91.22.2-1.51.2-0.2
Locomotion velocity, NPP test0.91.32.3-1.51.2-0.0
Intraocular pressure0.71.01.9-1.11.4-0.2
Delta distance traveled before/after self-admin0.00.00.1-0.10.30.2
Delta ambulatory time before/after self-admin0.40.50.8-0.80.9-0.1
Parametrial fat weight0.92.23.4-1.81.6-0.9
Pavlov. Cond. lever latency3.03.75.3-2.22.3-1.1
Pavlov. Cond. magazine entry latency5.67.210.33.2-3.21.1
Pavlov. Cond. change in total contacts1.11.11.91.4-1.2-0.0
Pavlov. Cond. index score4.55.68.22.8-2.90.8
Pavlov. Cond. latency score4.45.58.02.8-2.81.0
Pavlov. Cond. lever contacts1.61.92.91.6-1.70.7
Pavlov. Cond. magazine entry number5.67.010.3-3.23.2-0.9
Pavlov. Cond. intertrial magazine entries0.30.30.5-0.60.7-0.2
Pavlov. Cond. lever-magazine prob. diff.3.94.97.22.7-2.70.5
Pavlov. Cond. response bias4.85.98.72.9-3.00.8
Pavlov. Cond. lever latency0.40.50.80.9-0.70.5
Pavlov. Cond. magazine entry latency0.10.10.30.3-0.50.1
Pavlov. Cond. change in total contacts1.83.03.3-1.81.7-1.6
Pavlov. Cond. index score0.20.20.3-0.50.3-0.5
Pavlov. Cond. latency score0.10.10.1-0.40.2-0.4
Pavlov. Cond. lever contacts0.50.71.2-1.10.9-0.4
Pavlov. Cond. magazine entry number0.20.20.3-0.40.6-0.2
Pavlov. Cond. intertrial magazine entries0.40.61.21.1-0.80.1
Pavlov. Cond. lever-magazine prob. diff.0.10.10.2-0.40.2-0.5
Pavlov. Cond. response bias0.00.10.1-0.30.1-0.3
Time in closed arm before self-admin0.81.01.2-1.11.0-0.9
Time in closed arm after self-admin0.10.10.20.4-0.4-0.1
Time in open arm before self-admin0.91.01.41.2-1.00.8
Time in open arm after self-admin1.01.12.80.5-0.51.7
Bone: periosteal estimation0.00.10.10.2-0.2-0.3
Bone: periosteal perimeter0.81.52.21.4-1.50.4
Bone: post-yield work0.10.10.2-0.0-0.00.5
Progressive ratio test 1 active lever presses0.20.20.40.3-0.20.7
Progressive ratio test 1 breakpoint0.20.20.50.3-0.30.7
Progressive ratio test 1 inactive lever presses0.40.60.70.9-0.9-0.6
Progressive ratio test 2 active lever presses1.51.82.81.6-1.70.4
Progressive ratio test 2 breakpoint1.61.82.81.6-1.70.3
Progressive ratio test 2 inactive lever presses2.03.34.72.2-2.1-0.8
Incentive Sensitization - Responses1.42.03.31.7-1.8-0.1
Incentive Sensitization - Breakpoint1.62.13.41.7-1.8-0.1
Sum of active levers in priming session hrs 5-60.30.30.80.00.20.9
Progressive ratio1.72.63.9-1.92.0-0.5
Food seeking constrained by brief footshock0.70.80.90.9-1.00.8
Seeking ratio, punishment vs. effort2.84.16.02.3-2.50.9
Retroperitoneal fat weight1.56.28.8-3.02.7-1.5
Reaction time number correct0.20.30.60.8-0.50.2
Reaction time mean minus median0.00.00.1-0.30.10.2
Reaction time mean minus median AUC0.00.10.2-0.50.30.3
Reaction time num false alarms0.30.50.70.8-0.80.4
Reaction time num false alarms AUC0.10.20.20.5-0.40.4
Reaction time trials correct on left0.20.30.60.8-0.50.2
Reaction time trials on left0.20.30.70.8-0.50.3
Reaction time mean0.00.00.1-0.00.00.3
Reaction time mean AUC0.10.10.40.1-0.00.6
Median of all reaction times0.00.10.10.2-0.10.4
Reaction time omissions0.10.20.40.4-0.20.6
Reaction time false alarm rate0.00.10.10.2-0.30.2
Reaction time premature initiation rate1.82.53.3-1.81.8-1.1
Reaction time premature initiations0.81.51.8-1.31.3-1.0
Std. dev. reaction times0.10.20.3-0.40.30.6
Reaction time trials completed0.20.30.70.8-0.50.3
Reaction time trials AUC0.20.50.90.9-0.60.3
Run reversals in cocaine runway, females0.60.60.91.0-0.90.4
Run reversals in cocaine runway, males1.81.83.1-1.11.0-1.8
Latency to leave start box in cocaine runway0.40.40.5-0.70.6-0.7
Latency to leave start box in cocaine runway, F1.71.93.5-1.11.0-1.9
Latency to leave start box in cocaine runway, M0.80.81.10.8-0.71.0
Std. dev. time between licks in bursts3.24.46.72.6-2.50.1
Total sessions with >9 infusions0.30.40.60.7-0.8-0.4
Short access day 1 total inactive lever presses3.24.25.42.3-2.31.3
Short access day 10 total inactive lever presses0.61.64.5-0.40.3-2.1
Short access day 1 total infusions2.63.44.32.1-2.11.2
Short access day 10 total infusions2.02.63.21.8-1.81.2
Short access total infusions3.14.04.72.1-2.21.6
Short access day 1 locomotion0.30.40.60.8-0.80.1
Short access day 10 total locomotion0.10.10.3-0.20.30.6
Short access total locomotion0.10.20.40.2-0.10.6
One hour access (0.3 mA shock)1.01.11.21.0-1.11.1
Compulsive drug intake1.51.83.60.9-0.91.9
One hour access (shock baseline)0.40.60.80.8-0.9-0.5
Social response proportion0.20.30.5-0.40.7-0.4
Social responses0.10.20.3-0.50.6-0.2
Social time0.40.60.60.8-0.8-0.7
Soleus weight3.29.512.4-3.53.3-2.3
Bone: stiffness0.10.10.2-0.40.3-0.4
Tibialis anterior weight0.10.20.4-0.20.1-0.7
Time to tail flick, vehicle, before self-admin1.51.52.2-1.51.4-0.6
Time to tail flick, vehicle, after self-admin0.71.02.0-0.70.7-1.4
Time to tail flick, test, before self-admin0.40.41.3-0.10.21.1
Time to tail flick, test, after self-admin0.10.10.10.3-0.3-0.4
Delta time to tail flick, vehicle, before/after SA0.40.40.40.6-0.6-0.5
Delta time to tail flick, test, before/after SA0.20.20.30.6-0.5-0.3
Tibia length5.013.920.5-4.54.0-2.3
Ambulatory time before self-admin0.50.81.11.1-1.1-0.2
Ambulatory time after self-admin0.10.10.10.4-0.30.1
Bone: tissue strength3.03.03.2-1.71.7-1.8
Total heroin consumption2.22.54.4-1.11.4-2.1
Bone: trabecular number1.52.45.21.0-1.02.3
Bone: trabecular spacing2.53.36.4-1.31.3-2.5
Bone: trabecular thickness0.60.71.9-0.30.21.4
Bone: trabecular tissue density0.30.40.7-0.90.7-0.3
Water consumed over 24 hours0.40.61.7-0.30.1-1.3
Number of responses in last shaping day0.91.01.70.8-0.8-1.3