Spink4

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 pVTA intron excision ratio chr5_60778104_60854635 0.03 0.03 9.1e-03 0.02 0.02 0.02 0.02 5.7e-03 4.3e-03 6.7e-03 5.8e-03
2 Eye intron excision ratio chr5_60778104_60782021 0.33 0.17 2.3e-03 0.21 0.17 0.22 0.2 3.5e-04 1.2e-03 3.2e-04 5.7e-04
3 BLA alternative TSS XM_063288150.1 0.08 0.06 2.5e-03 0.04 0.02 0.03 0.03 2.9e-03 1.9e-02 9.6e-03 8.5e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density1.01.82.3-1.5-1.50.9
Area under the delay curve0.30.40.80.90.5-0.5
BMI with tail0.61.93.5-1.9-1.50.4
BMI without tail0.42.24.5-2.1-1.40.1
Body weight1.56.610.8-3.3-2.7-1.2
Weight adjusted by age0.20.61.5-0.4-0.5-1.2
Bone surface0.40.91.4-1.2-1.1-0.1
Bone volume0.40.91.3-1.1-1.10.4
Breakpoint value in progressive ratio session1.73.05.41.21.4-2.3
Number of licking bursts2.37.011.2-3.1-3.40.5
Context. condit. distance diff. score0.10.10.20.40.10.4
Locomotion velocity, session 13.84.312.7-0.30.0-3.6
Locomotion distance, session 11.11.44.1-0.3-0.1-2.0
Locomotion velocity, session 21.51.82.7-1.6-1.60.4
Locomotion distance, session 21.62.22.5-1.6-1.4-1.4
Locomotion velocity, session 30.70.82.5-0.0-0.0-1.6
Locomotion distance, session 31.01.21.7-1.0-0.8-1.3
Stereotopy head waving bouts, day 30.40.51.2-0.4-0.3-1.1
Stereotopy head waving duration, day 30.10.20.2-0.4-0.5-0.2
Locomotion velocity, session 70.00.10.10.40.1-0.0
Locomotion distance, session 70.20.30.6-0.3-0.5-0.8
Stereotopy head waving bouts, day 71.71.93.1-1.8-1.6-0.4
Stereotopy head waving duration, day 71.31.62.5-1.6-1.5-0.1
Locomotion velocity, session 80.80.92.5-0.3-0.5-1.6
Locomotion distance, session 80.50.71.8-0.3-0.4-1.3
Degree of sensitization distance0.30.30.50.70.40.5
Degree of sensitization stereotypy1.51.62.7-1.6-1.5-0.0
Conditioned locomotion0.50.61.50.10.5-1.2
Cocaine response after cond. corrected0.91.32.40.90.9-1.5
Cocaine response after cond. not corrected1.01.43.40.70.6-1.8
Cocaine response before conditioning0.91.11.7-1.2-1.30.0
Saline control response1.72.32.9-1.7-1.5-1.4
Bone: connectivity density0.50.80.8-0.8-0.90.9
Bone: cortical apparent density0.40.61.6-0.1-0.31.3
Bone: cortical area2.43.95.1-2.3-2.21.2
Bone: cortical porosity0.10.10.20.1-0.30.5
Bone: cortical porosity0.20.20.4-0.4-0.6-0.0
Bone: cortical thickness1.83.03.5-1.5-1.81.9
Bone: cortical thickness0.40.51.40.1-0.21.2
Bone: cortical tissue density0.30.51.3-0.0-0.21.2
Condit. Reinf. active minus inactive responses0.20.20.5-0.7-0.5-0.1
Condit. Reinf. active-inactive response ratio0.70.81.21.01.10.4
Condit. Reinf. active responses1.62.13.5-1.9-1.6-0.2
Condit. Reinf. inactive responses2.43.14.7-2.1-2.20.2
Incentive salience index mean2.53.25.2-2.3-2.0-0.8
Condit. Reinf. lever presses7.210.715.6-3.9-3.7-1.8
Condit. Reinf. active minus inactive responses0.30.40.6-0.8-0.70.4
Condit. Reinf. active-inactive response ratio0.10.20.5-0.1-0.20.7
Condit. Reinf. active responses0.91.32.3-1.5-1.30.2
Condit. Reinf. inactive responses1.32.03.3-1.8-1.50.6
Condit. Reinf. lever presses1.42.02.9-1.7-1.41.1
Condit. Reinf. lever reinforcers received1.11.52.7-1.7-1.40.1
Conditioned reinforcement - actives0.00.10.2-0.5-0.30.3
Conditioned reinforcement - inactives0.00.00.1-0.1-0.0-0.2
Conditioned locomotion0.00.10.1-0.20.3-0.1
Patch foraging indifference point 0 sec1.02.98.2-0.3-0.5-2.9
Patch foraging indifference point AUC1.63.86.9-2.6-2.0-0.7
Delay disc. indifference point, 0s delay0.20.20.50.70.1-0.5
Delay disc. indifference point, 16s delay1.01.51.61.21.1-1.3
Delay disc. indifference point, 2s delay0.30.30.5-0.5-0.50.7
Delay disc. indifference point, 24s delay0.10.10.40.60.1-0.0
Delay disc. indifference point, 4s delay0.10.10.20.40.10.1
Delay disc. indifference point, 8s delay0.00.00.00.1-0.20.0
Indifference point function ln k0.41.22.51.61.1-0.1
Indifference point function log k0.41.22.51.61.1-0.1
Patch foraging total patch changes 0 sec1.13.17.2-0.9-1.1-2.7
Patch foraging total patch changes 12 sec0.70.91.3-1.1-1.1-0.5
Patch foraging total patch changes 18 sec0.10.30.8-0.3-0.1-0.9
Patch foraging total patch changes 24 sec0.51.82.3-1.5-1.3-1.1
Patch foraging total patch changes 6 sec1.72.94.7-1.5-1.3-2.2
Patch foraging time to switch 0 sec0.83.13.82.01.91.4
Patch foraging water rate 0 sec0.62.32.7-1.4-1.5-1.7
Patch foraging water rate 12 sec0.10.30.5-0.4-0.3-0.7
Patch foraging water rate 18 sec0.61.41.8-1.0-1.31.1
Patch foraging water rate 24 sec0.50.71.1-0.4-0.91.1
Patch foraging water rate 6 sec1.32.03.2-1.8-1.6-0.2
Seeking ratio, delayed vs. immediate footshock1.01.42.7-1.7-1.2-0.2
Distance traveled before self-admin2.45.28.3-2.9-2.4-1.1
Distance traveled after self-admin3.05.28.2-2.6-2.90.8
Extensor digitorum longus weight3.514.022.7-4.8-4.4-0.3
Bone: elastic displacement4.45.68.93.02.61.1
Bone: elastic work3.14.18.01.71.22.8
Bone: endosteal estimation0.51.31.7-1.3-0.7-1.3
Bone: endosteal perimeter0.61.51.9-1.4-0.9-1.4
Epididymis fat weight0.10.51.0-0.8-1.00.2
Delta time in closed arm before/after self-admin0.30.20.6-0.10.30.8
Delta time in open arm before/after self-admin0.10.10.30.30.2-0.5
Diff in mean of infusions in LGA sessions0.40.61.00.50.81.0
Delay discount exponential model param0.30.40.8-0.9-0.50.4
Extinction: sum of active levers before priming0.81.22.41.51.1-0.2
Active lever presses in extinction session 60.10.10.20.4-0.00.1
Bone: final force1.42.33.9-2.0-1.70.3
Bone: final moment1.21.93.1-1.8-1.50.6
Food consumed during 24 hour testing period0.61.21.6-1.3-1.1-1.0
Glucose1.01.62.2-1.5-1.4-0.6
Heart weight0.20.30.5-0.7-0.60.0
Delay discount hyperbolic model param0.30.30.6-0.8-0.50.5
Intermittent access intake day 1-15 change0.00.20.4-0.60.00.2
Intermittent access intake escalation0.00.20.5-0.7-0.10.5
Intermittent access intake escalation 20.81.41.6-1.3-1.01.2
Intermitt. access day 1 inactive lever presses0.10.91.3-0.8-1.1-0.9
Intermitt. access day 15 inactive lever presses0.00.20.3-0.6-0.2-0.4
Intermitt. access escalation Index0.10.20.3-0.4-0.5-0.1
Intermittent access day 1 total infusions0.72.13.61.61.9-0.3
Intermittent access day 15 total infusions0.10.30.50.10.70.7
Intermittent access terminal intake (last 3 days)0.10.20.4-0.6-0.30.4
Intermittent access total infusions0.10.10.2-0.00.40.0
Intermittent access day 1 locomotion0.81.52.21.51.5-0.3
Intermittent access day 15 total locomotion0.72.64.91.72.2-0.2
Intermittent access total locomotion1.31.62.51.31.60.7
Intermittent access standard deviation0.00.10.1-0.30.2-0.3
Left kidney weight0.32.64.1-1.6-1.1-2.0
Right kidney weight0.10.71.1-1.1-0.7-0.6
Cocaine induced anxiety0.41.12.2-1.0-1.5-0.3
Post-drug Anxiety2.52.94.6-1.8-2.1-0.9
Baseline Anxiety0.20.40.6-0.7-0.70.2
Tail length0.73.86.6-2.6-2.1-0.5
Length with tail1.04.55.2-2.3-2.1-2.0
Length without tail0.21.02.7-0.3-0.4-1.6
Times rat made contact with spout0.50.60.7-0.8-0.80.6
Lifetime Intake0.10.10.2-0.10.4-0.4
Liver weight, left0.10.20.4-0.3-0.4-0.6
Liver weight, right0.61.01.41.11.20.7
Locomotor activity0.00.00.10.20.10.0
Locomotor testing distance0.20.40.90.50.3-0.9
Locomotor testing rearing0.10.50.8-0.9-0.5-0.6
Locomotion in novel chamber0.50.71.6-0.3-1.30.6
Locomotion in novel chamber post-restriction0.72.22.5-1.6-1.61.3
Fecal boli incidents, locomotor time 10.82.23.41.81.80.3
Change in fecal boli incidents, locomotor task0.50.50.9-0.9-0.5-0.7
Time >=10cm from walls, locomotor time 10.10.10.4-0.00.2-0.6
Bouts of movement, locomotor time 10.50.61.11.00.70.5
Total resting periods, locomotor time 11.21.42.01.41.01.0
Rest time, locomotor task time 11.42.24.81.00.92.2
Distance moved, locomotor task time 10.72.03.8-1.3-0.8-1.9
Vertical activity count, locomotor time 10.32.24.3-1.1-1.0-2.1
Time >=10cm from walls, locomotor time 20.00.10.3-0.20.1-0.6
Bouts of movement, locomotor time 20.20.71.3-0.9-1.10.2
Total resting periods, locomotor time 20.10.30.6-0.5-0.80.3
Rest time, locomotor task time 20.40.70.80.80.70.9
Distance moved, locomotor task time 20.10.10.2-0.5-0.20.2
Vertical activity count, locomotor time 20.20.50.6-0.7-0.6-0.8
Light reinforcement 10.73.17.6-1.1-0.6-2.8
Light reinforcement 21.12.57.1-0.6-0.4-2.7
Bone: marrow area0.51.11.8-1.4-0.8-1.0
Bone: maximum diameter1.83.65.6-2.4-2.30.4
Bone: maximum force2.54.98.1-2.9-2.50.3
Bone: maximum moment2.14.06.4-2.5-2.30.6
Mean time between licks in bursts0.10.71.30.91.20.1
Mean num. licks in bursts1.43.86.42.22.50.2
Cd content in liver1.01.11.8-1.3-1.20.2
Co content in liver0.70.81.10.80.8-1.1
Cu content in liver0.60.71.31.10.70.5
Fe content in liver0.91.21.31.01.1-1.1
K content in liver0.30.30.40.50.4-0.7
Mg content in liver0.80.81.41.21.1-0.0
Mn content in liver2.02.33.1-1.7-1.80.9
Na content in liver0.80.91.21.11.00.7
Rb content in liver4.24.87.42.72.70.1
Se content in liver3.03.65.7-2.1-2.40.7
Sr content in liver0.50.40.6-0.8-0.80.3
Zn content in liver0.10.10.2-0.1-0.50.4
Bone: minimum diameter0.10.20.40.30.50.6
Time in familiar zone, hab. session 12.42.67.80.3-0.12.8
Time in novel zone, hab. session 13.23.66.11.41.6-2.5
Total zone transitions, hab. session 10.00.00.00.2-0.2-0.1
Total locomotion distance, hab. session 11.11.62.1-0.8-1.41.4
Locomotion velocity, hab. session 11.92.64.1-1.6-2.01.1
Time in familiar zone, hab. session 21.51.73.70.90.71.9
Time in novel zone, hab. session 21.61.73.60.80.9-1.9
Total zone transitions, hab. session 20.91.22.4-0.8-0.7-1.5
Total locomotion distance, hab. session 20.91.22.0-1.2-1.4-0.2
Locomotion velocity, hab. session 21.01.32.3-1.3-1.5-0.1
Novel to familiar place preference ratio3.14.16.22.12.5-1.2
Novelty place preference3.74.77.42.42.7-0.9
Time in novel zone, NPP test4.55.58.62.62.9-1.0
Total zone transitions, NPP test0.81.12.0-0.9-0.8-1.4
Total locomotion distance, NPP test1.52.12.5-1.6-1.5-1.1
Locomotion velocity, NPP test1.62.33.2-1.8-1.7-0.9
Intraocular pressure0.91.52.3-1.5-1.3-0.6
Delta distance traveled before/after self-admin0.20.20.4-0.2-0.40.6
Delta ambulatory time before/after self-admin0.10.20.50.1-0.40.7
Parametrial fat weight0.30.71.30.60.6-1.2
Pavlov. Cond. lever latency5.77.210.93.33.11.2
Pavlov. Cond. magazine entry latency0.20.30.4-0.7-0.4-0.4
Pavlov. Cond. change in total contacts1.61.82.7-1.7-1.1-1.2
Pavlov. Cond. index score2.43.14.7-2.2-2.0-0.6
Pavlov. Cond. latency score2.22.84.3-2.1-1.9-0.6
Pavlov. Cond. lever contacts5.56.79.8-3.1-3.0-1.0
Pavlov. Cond. magazine entry number0.30.30.60.80.60.1
Pavlov. Cond. intertrial magazine entries0.10.10.2-0.4-0.30.1
Pavlov. Cond. lever-magazine prob. diff.2.22.74.4-2.1-1.9-0.3
Pavlov. Cond. response bias2.63.35.3-2.3-2.0-0.8
Pavlov. Cond. lever latency1.31.92.61.61.3-1.1
Pavlov. Cond. magazine entry latency0.20.30.60.50.40.8
Pavlov. Cond. change in total contacts0.61.53.7-0.6-0.61.9
Pavlov. Cond. index score0.40.61.8-0.3-0.21.3
Pavlov. Cond. latency score0.50.82.2-0.5-0.41.5
Pavlov. Cond. lever contacts0.91.41.8-1.4-1.11.1
Pavlov. Cond. magazine entry number0.70.92.70.20.3-1.6
Pavlov. Cond. intertrial magazine entries0.10.30.4-0.6-0.5-0.3
Pavlov. Cond. lever-magazine prob. diff.0.50.82.2-0.3-0.21.5
Pavlov. Cond. response bias0.71.01.8-0.8-0.71.3
Time in closed arm before self-admin0.20.40.80.90.60.2
Time in closed arm after self-admin0.40.40.60.60.60.8
Time in open arm before self-admin0.81.01.5-1.1-0.6-1.2
Time in open arm after self-admin0.80.91.1-1.0-0.9-1.0
Bone: periosteal estimation1.02.34.1-2.0-1.7-0.1
Bone: periosteal perimeter0.40.81.0-1.0-0.7-0.9
Bone: post-yield work1.52.63.8-1.9-1.7-1.1
Progressive ratio test 1 active lever presses0.10.20.30.30.5-0.6
Progressive ratio test 1 breakpoint0.10.20.40.10.4-0.6
Progressive ratio test 1 inactive lever presses0.40.92.1-0.8-0.4-1.4
Progressive ratio test 2 active lever presses0.50.71.00.71.0-0.7
Progressive ratio test 2 breakpoint0.60.71.10.71.1-0.8
Progressive ratio test 2 inactive lever presses0.00.10.1-0.20.1-0.3
Incentive Sensitization - Responses0.10.30.60.30.8-0.5
Incentive Sensitization - Breakpoint0.20.51.00.51.0-0.5
Sum of active levers in priming session hrs 5-64.44.15.92.22.4-1.3
Progressive ratio0.10.20.40.40.3-0.6
Food seeking constrained by brief footshock6.48.011.7-3.4-2.9-1.9
Seeking ratio, punishment vs. effort1.53.25.4-2.3-2.1-0.3
Retroperitoneal fat weight0.31.42.41.51.10.9
Reaction time number correct0.10.20.50.30.4-0.7
Reaction time mean minus median0.42.88.3-0.2-0.32.9
Reaction time mean minus median AUC0.32.35.7-0.9-0.82.4
Reaction time num false alarms0.30.51.4-0.3-0.21.2
Reaction time num false alarms AUC0.20.50.6-0.8-0.70.6
Reaction time trials correct on left0.10.20.50.30.4-0.7
Reaction time trials on left0.10.30.40.40.5-0.7
Reaction time mean1.43.26.21.41.12.5
Reaction time mean AUC1.53.57.21.51.12.7
Median of all reaction times2.13.24.02.01.61.7
Reaction time omissions2.13.45.62.12.40.4
Reaction time false alarm rate0.30.41.1-0.3-0.31.0
Reaction time premature initiation rate2.43.75.32.32.11.2
Reaction time premature initiations1.13.34.92.22.10.6
Std. dev. reaction times0.92.98.30.60.42.9
Reaction time trials completed0.10.30.40.40.5-0.7
Reaction time trials AUC0.10.30.40.40.5-0.6
Run reversals in cocaine runway, females0.40.51.30.30.11.1
Run reversals in cocaine runway, males0.20.20.40.30.60.2
Latency to leave start box in cocaine runway0.91.32.5-1.2-1.60.1
Latency to leave start box in cocaine runway, F0.20.20.60.40.2-0.8
Latency to leave start box in cocaine runway, M4.34.16.6-2.4-2.60.0
Std. dev. time between licks in bursts0.40.81.40.91.20.4
Total sessions with >9 infusions0.10.20.4-0.30.2-0.7
Short access day 1 total inactive lever presses0.71.43.1-0.9-0.6-1.8
Short access day 10 total inactive lever presses0.11.01.6-1.1-1.3-0.5
Short access day 1 total infusions0.30.61.6-0.4-0.1-1.3
Short access day 10 total infusions0.40.60.90.50.7-1.0
Short access total infusions0.30.51.10.20.5-1.0
Short access day 1 locomotion1.01.72.61.61.6-0.4
Short access day 10 total locomotion0.31.41.81.30.91.2
Short access total locomotion0.60.91.41.11.20.0
One hour access (0.3 mA shock)0.30.40.70.20.8-0.7
Compulsive drug intake0.00.00.10.1-0.20.3
One hour access (shock baseline)0.30.81.60.20.9-1.2
Social response proportion0.70.91.61.30.90.4
Social responses0.20.30.7-0.9-0.4-0.3
Social time0.30.40.80.40.9-0.6
Soleus weight0.82.46.50.30.7-2.5
Bone: stiffness3.25.99.9-3.1-2.80.2
Tibialis anterior weight4.917.027.5-5.2-4.7-1.2
Time to tail flick, vehicle, before self-admin1.41.72.91.51.70.3
Time to tail flick, vehicle, after self-admin0.10.10.3-0.10.40.5
Time to tail flick, test, before self-admin0.20.30.5-0.7-0.6-0.0
Time to tail flick, test, after self-admin0.70.81.6-0.7-0.51.3
Delta time to tail flick, vehicle, before/after SA0.40.50.7-0.9-0.8-0.0
Delta time to tail flick, test, before/after SA0.30.40.70.60.40.9
Tibia length0.41.22.8-0.7-0.6-1.7
Ambulatory time before self-admin1.34.06.2-2.5-2.1-1.2
Ambulatory time after self-admin1.93.15.2-2.0-2.3-0.3
Bone: tissue strength0.10.10.2-0.4-0.40.2
Total heroin consumption1.11.32.01.11.4-0.8
Bone: trabecular number0.81.41.9-1.3-1.40.8
Bone: trabecular spacing0.10.20.4-0.3-0.20.6
Bone: trabecular thickness0.10.10.20.30.10.4
Bone: trabecular tissue density2.84.97.4-2.7-2.70.0
Water consumed over 24 hours0.91.72.6-1.6-1.6-0.2
Number of responses in last shaping day1.82.36.60.10.6-2.6