Spata31g1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression Spata31g1 0.08 0.05 6.6e-06 0.06 0.05 0.06 0.05 5.7e-06 1.4e-05 6.7e-06 1.8e-05
2 Adipose gene expression Spata31g1 0.28 0.12 0.0e+00 0.22 0.23 0.23 0.23 3.5e-24 3.2e-25 2.0e-25 9.3e-26
3 PL gene expression Spata31g1 0.05 0.04 3.4e-04 0.02 0.02 0.02 0.02 5.7e-03 2.6e-03 1.3e-03 4.5e-03
4 NAcc gene expression Spata31g1 0.04 0.03 5.4e-05 0 0.02 0.02 0.02 5.7e-02 1.2e-04 3.9e-04 1.2e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.30.62.01.4-0.60.00.1
Area under the delay curve0.10.20.5-0.70.30.2-0.2
BMI with tail0.62.25.22.3-1.50.8-0.8
BMI without tail0.73.57.22.7-2.01.3-1.2
Body weight2.711.716.34.0-3.63.0-3.0
Weight adjusted by age0.10.40.70.5-0.50.7-0.9
Bone surface0.40.81.71.3-0.90.6-0.6
Bone volume0.20.41.21.1-0.50.2-0.1
Breakpoint value in progressive ratio session1.22.14.0-0.2-0.82.0-2.0
Number of licking bursts1.02.96.02.5-2.01.0-0.9
Context. condit. distance diff. score0.20.20.2-0.50.4-0.50.5
Locomotion velocity, session 15.66.39.51.1-2.33.0-3.1
Locomotion distance, session 11.72.23.20.9-1.31.7-1.8
Locomotion velocity, session 20.60.72.21.5-0.80.3-0.3
Locomotion distance, session 22.84.04.32.1-2.01.9-2.0
Locomotion velocity, session 31.11.32.00.4-1.11.4-1.4
Locomotion distance, session 32.83.23.21.8-1.81.8-1.8
Stereotopy head waving bouts, day 30.60.71.3-0.1-0.71.1-1.1
Stereotopy head waving duration, day 30.10.10.2-0.5-0.10.4-0.4
Locomotion velocity, session 70.00.00.1-0.30.2-0.20.1
Locomotion distance, session 70.40.50.70.7-0.70.8-0.8
Stereotopy head waving bouts, day 71.51.82.31.3-1.51.3-1.2
Stereotopy head waving duration, day 70.70.91.30.9-1.10.9-0.9
Locomotion velocity, session 80.70.91.30.3-1.01.1-1.1
Locomotion distance, session 80.71.11.50.7-1.01.2-1.2
Degree of sensitization distance0.90.91.3-1.11.0-0.80.9
Degree of sensitization stereotypy0.91.01.51.2-1.20.8-0.7
Conditioned locomotion0.40.50.80.0-0.50.9-0.9
Cocaine response after cond. corrected0.40.61.3-1.10.00.7-0.8
Cocaine response after cond. not corrected0.50.71.1-0.9-0.21.0-1.0
Cocaine response before conditioning0.40.51.21.1-0.60.4-0.3
Saline control response2.12.93.51.3-1.91.8-1.8
Bone: connectivity density0.20.30.60.8-0.1-0.40.5
Bone: cortical apparent density0.60.91.7-0.10.7-1.21.3
Bone: cortical area0.61.13.61.9-0.8-0.10.0
Bone: cortical porosity0.30.30.4-0.60.5-0.50.5
Bone: cortical porosity0.00.00.0-0.1-0.10.1-0.1
Bone: cortical thickness0.40.71.10.90.2-1.01.0
Bone: cortical thickness0.91.01.5-0.51.1-1.11.2
Bone: cortical tissue density0.50.91.5-0.20.7-1.21.2
Condit. Reinf. active minus inactive responses0.10.20.40.7-0.40.2-0.1
Condit. Reinf. active-inactive response ratio0.70.70.8-0.90.8-0.80.8
Condit. Reinf. active responses1.11.43.21.8-1.20.6-0.6
Condit. Reinf. inactive responses1.11.44.22.0-1.10.4-0.5
Incentive salience index mean2.73.55.72.4-2.11.4-1.4
Condit. Reinf. lever presses8.312.416.54.1-3.93.0-3.0
Condit. Reinf. active minus inactive responses0.20.30.91.0-0.60.2-0.1
Condit. Reinf. active-inactive response ratio0.10.10.20.20.1-0.40.3
Condit. Reinf. active responses1.21.73.81.9-1.30.9-0.8
Condit. Reinf. inactive responses1.01.54.02.0-1.20.6-0.4
Condit. Reinf. lever presses0.71.03.41.8-0.7-0.00.2
Condit. Reinf. lever reinforcers received1.42.04.32.1-1.40.9-0.8
Conditioned reinforcement - actives0.10.30.5-0.1-0.70.6-0.4
Conditioned reinforcement - inactives0.10.20.3-0.5-0.50.3-0.3
Conditioned locomotion0.40.51.00.2-0.61.0-0.9
Patch foraging indifference point 0 sec1.33.75.80.8-1.72.3-2.4
Patch foraging indifference point AUC3.37.913.33.6-2.82.3-2.3
Delay disc. indifference point, 0s delay0.30.31.0-1.00.30.1-0.1
Delay disc. indifference point, 16s delay0.30.40.7-0.8-0.10.7-0.7
Delay disc. indifference point, 2s delay0.10.10.20.00.0-0.40.4
Delay disc. indifference point, 24s delay0.10.10.2-0.40.5-0.30.3
Delay disc. indifference point, 4s delay0.00.00.1-0.30.30.00.0
Delay disc. indifference point, 8s delay0.00.00.00.10.10.1-0.1
Indifference point function ln k0.82.44.9-2.21.5-1.11.2
Indifference point function log k0.82.44.9-2.21.5-1.11.2
Patch foraging total patch changes 0 sec1.54.36.11.2-1.92.4-2.5
Patch foraging total patch changes 12 sec1.31.72.81.7-1.31.0-1.1
Patch foraging total patch changes 18 sec0.51.21.41.2-1.11.0-1.1
Patch foraging total patch changes 24 sec1.03.34.02.0-1.91.6-1.7
Patch foraging total patch changes 6 sec3.66.16.62.3-2.52.5-2.6
Patch foraging time to switch 0 sec1.14.46.0-2.52.0-1.92.0
Patch foraging water rate 0 sec0.93.63.71.9-1.91.8-1.9
Patch foraging water rate 12 sec0.10.20.30.3-0.40.5-0.6
Patch foraging water rate 18 sec0.10.20.40.6-0.2-0.20.4
Patch foraging water rate 24 sec0.71.01.5-0.30.8-1.21.2
Patch foraging water rate 6 sec0.60.91.61.1-1.30.8-0.6
Seeking ratio, delayed vs. immediate footshock1.52.24.12.0-1.71.0-0.9
Distance traveled before self-admin2.65.67.22.4-2.72.2-2.1
Distance traveled after self-admin0.40.61.41.1-1.20.2-0.1
Extensor digitorum longus weight3.413.722.74.8-4.02.8-2.8
Bone: elastic displacement5.87.49.5-2.83.1-2.52.4
Bone: elastic work6.18.010.1-2.02.9-3.23.1
Bone: endosteal estimation1.33.23.51.8-1.91.7-1.8
Bone: endosteal perimeter1.53.74.11.8-1.91.9-2.0
Epididymis fat weight0.10.41.21.1-0.50.2-0.2
Delta time in closed arm before/after self-admin0.40.30.60.40.3-0.80.7
Delta time in open arm before/after self-admin0.20.20.3-0.4-0.20.6-0.5
Diff in mean of infusions in LGA sessions0.30.50.6-0.40.7-0.70.8
Delay discount exponential model param0.10.10.30.6-0.3-0.20.2
Extinction: sum of active levers before priming0.81.33.6-1.91.1-0.40.5
Active lever presses in extinction session 60.10.10.3-0.50.4-0.20.1
Bone: final force0.81.43.11.8-1.20.7-0.7
Bone: final moment0.50.92.31.5-0.90.3-0.3
Food consumed during 24 hour testing period0.71.41.61.2-1.31.1-1.1
Glucose1.82.95.12.3-1.71.4-1.4
Heart weight0.40.61.61.3-0.60.4-0.5
Delay discount hyperbolic model param0.10.10.20.4-0.2-0.30.3
Intermittent access intake day 1-15 change0.00.20.40.6-0.50.1-0.0
Intermittent access intake escalation0.00.10.30.5-0.3-0.10.2
Intermittent access intake escalation 20.20.30.40.6-0.4-0.50.7
Intermitt. access day 1 inactive lever presses0.11.42.11.4-1.21.0-1.1
Intermitt. access day 15 inactive lever presses0.00.20.30.1-0.50.5-0.4
Intermitt. access escalation Index0.20.70.90.9-0.70.9-0.8
Intermittent access day 1 total infusions0.20.61.9-1.40.20.6-0.4
Intermittent access day 15 total infusions0.00.00.0-0.2-0.20.2-0.0
Intermittent access terminal intake (last 3 days)0.20.30.7-0.0-0.80.6-0.4
Intermittent access total infusions0.40.50.7-0.0-0.80.9-0.7
Intermittent access day 1 locomotion0.30.51.4-1.20.60.3-0.3
Intermittent access day 15 total locomotion0.10.41.3-1.10.60.0-0.1
Intermittent access total locomotion0.91.02.4-1.51.0-0.60.7
Intermittent access standard deviation0.10.40.70.4-0.80.7-0.6
Left kidney weight0.54.44.82.0-2.22.0-2.2
Right kidney weight0.21.53.11.8-1.00.8-1.1
Cocaine induced anxiety0.00.10.2-0.4-0.3-0.10.2
Post-drug Anxiety1.11.22.01.0-1.41.0-0.9
Baseline Anxiety0.20.41.01.0-0.60.3-0.3
Tail length1.05.28.62.9-2.41.8-1.8
Length with tail1.98.69.02.9-3.02.9-2.9
Length without tail0.31.82.70.4-1.21.6-1.6
Times rat made contact with spout0.10.10.30.5-0.4-0.20.2
Lifetime Intake0.91.21.9-0.0-1.21.4-1.2
Liver weight, left0.00.10.20.1-0.10.3-0.4
Liver weight, right0.61.11.9-1.40.9-0.91.0
Locomotor activity0.00.00.00.1-0.10.1-0.0
Locomotor testing distance0.10.30.5-0.2-0.30.7-0.7
Locomotor testing rearing0.41.62.21.2-1.51.2-1.1
Locomotion in novel chamber0.60.81.1-0.80.9-1.01.0
Locomotion in novel chamber post-restriction0.20.51.11.0-0.1-0.70.7
Fecal boli incidents, locomotor time 10.61.62.2-1.21.5-1.21.0
Change in fecal boli incidents, locomotor task1.41.41.61.2-1.11.2-1.2
Time >=10cm from walls, locomotor time 10.60.81.20.4-0.81.1-1.1
Bouts of movement, locomotor time 11.31.72.7-1.61.4-1.01.1
Total resting periods, locomotor time 12.63.03.7-1.91.8-1.51.6
Rest time, locomotor task time 13.65.87.2-1.82.4-2.72.6
Distance moved, locomotor task time 12.05.66.51.9-2.42.6-2.5
Vertical activity count, locomotor time 10.85.87.51.6-2.52.7-2.6
Time >=10cm from walls, locomotor time 20.10.20.30.4-0.50.5-0.5
Bouts of movement, locomotor time 20.10.40.60.8-0.80.6-0.5
Total resting periods, locomotor time 20.00.10.20.4-0.40.2-0.2
Rest time, locomotor task time 20.91.51.8-1.21.3-1.21.2
Distance moved, locomotor task time 20.10.10.40.6-0.40.00.0
Vertical activity count, locomotor time 20.51.11.51.0-1.21.0-1.0
Light reinforcement 11.98.711.91.8-2.93.4-3.3
Light reinforcement 22.86.39.50.9-2.33.1-3.1
Bone: marrow area1.22.93.31.8-1.81.5-1.7
Bone: maximum diameter0.91.84.52.1-1.40.7-0.7
Bone: maximum force1.42.86.32.5-1.80.9-0.9
Bone: maximum moment1.01.94.92.2-1.40.6-0.6
Mean time between licks in bursts0.10.40.6-0.70.8-0.60.5
Mean num. licks in bursts0.82.03.2-1.81.6-1.11.1
Cd content in liver0.91.01.41.2-0.90.9-0.9
Co content in liver0.20.20.3-0.50.10.5-0.5
Cu content in liver1.61.92.5-1.61.6-1.21.2
Fe content in liver0.20.30.5-0.7-0.10.5-0.5
K content in liver0.10.10.3-0.3-0.00.4-0.5
Mg content in liver0.40.41.0-1.00.7-0.30.2
Mn content in liver0.20.30.91.0-0.3-0.20.1
Na content in liver1.01.11.6-1.31.2-0.90.8
Rb content in liver2.32.76.1-2.51.6-1.01.0
Se content in liver0.81.02.41.5-1.10.4-0.3
Sr content in liver0.20.20.40.60.00.3-0.5
Zn content in liver0.10.10.10.20.3-0.30.2
Bone: minimum diameter0.10.30.4-0.30.6-0.70.6
Time in familiar zone, hab. session 13.43.85.6-0.91.8-2.32.4
Time in novel zone, hab. session 10.91.01.8-0.9-0.31.2-1.3
Total zone transitions, hab. session 10.00.00.00.10.2-0.10.0
Total locomotion distance, hab. session 10.40.50.90.50.5-0.90.9
Locomotion velocity, hab. session 10.40.51.81.3-0.3-0.20.2
Time in familiar zone, hab. session 22.42.73.4-1.11.7-1.81.8
Time in novel zone, hab. session 20.50.60.9-0.8-0.30.9-0.9
Total zone transitions, hab. session 21.21.61.91.0-1.31.3-1.4
Total locomotion distance, hab. session 20.50.61.11.1-0.80.5-0.6
Locomotion velocity, hab. session 20.60.71.51.2-0.90.5-0.6
Novel to familiar place preference ratio0.81.13.3-1.80.90.1-0.1
Novelty place preference1.31.64.8-2.21.3-0.30.2
Time in novel zone, NPP test1.62.05.8-2.41.4-0.30.2
Total zone transitions, NPP test1.52.22.71.3-1.41.6-1.6
Total locomotion distance, NPP test2.33.33.31.8-1.81.8-1.8
Locomotion velocity, NPP test2.43.44.22.0-1.91.7-1.7
Intraocular pressure2.33.84.32.1-2.11.9-1.8
Delta distance traveled before/after self-admin0.30.30.5-0.50.2-0.60.7
Delta ambulatory time before/after self-admin0.61.01.2-1.10.8-1.11.1
Parametrial fat weight0.10.30.60.1-0.10.7-0.8
Pavlov. Cond. lever latency5.56.99.6-3.12.9-2.22.1
Pavlov. Cond. magazine entry latency0.20.30.70.8-0.50.4-0.4
Pavlov. Cond. change in total contacts2.42.63.21.8-1.81.4-1.4
Pavlov. Cond. index score2.02.54.42.1-1.81.2-1.2
Pavlov. Cond. latency score1.92.44.02.0-1.71.2-1.2
Pavlov. Cond. lever contacts4.65.68.22.9-2.71.9-1.8
Pavlov. Cond. magazine entry number0.20.30.9-1.00.5-0.20.2
Pavlov. Cond. intertrial magazine entries0.10.10.20.4-0.30.2-0.1
Pavlov. Cond. lever-magazine prob. diff.1.62.04.12.0-1.60.9-0.9
Pavlov. Cond. response bias2.73.35.62.4-1.91.4-1.4
Pavlov. Cond. lever latency0.70.93.2-1.80.70.0-0.1
Pavlov. Cond. magazine entry latency0.40.50.7-0.60.7-0.80.9
Pavlov. Cond. change in total contacts0.41.01.60.80.5-1.21.3
Pavlov. Cond. index score0.40.61.00.40.5-0.91.0
Pavlov. Cond. latency score0.40.61.10.50.4-1.01.1
Pavlov. Cond. lever contacts0.40.72.41.5-0.5-0.10.2
Pavlov. Cond. magazine entry number0.70.91.6-0.1-0.71.2-1.3
Pavlov. Cond. intertrial magazine entries0.20.40.40.6-0.60.6-0.6
Pavlov. Cond. lever-magazine prob. diff.0.40.71.20.40.6-1.01.1
Pavlov. Cond. response bias0.30.40.90.90.1-0.60.7
Time in closed arm before self-admin0.20.30.5-0.70.6-0.40.5
Time in closed arm after self-admin1.01.11.7-0.70.9-1.31.3
Time in open arm before self-admin1.61.92.21.4-1.31.4-1.5
Time in open arm after self-admin1.92.12.61.2-1.41.6-1.6
Bone: periosteal estimation0.92.24.32.1-1.51.0-1.1
Bone: periosteal perimeter0.61.21.41.2-1.11.0-1.1
Bone: post-yield work2.23.94.22.1-2.01.9-1.9
Progressive ratio test 1 active lever presses0.61.11.8-0.7-1.01.4-1.0
Progressive ratio test 1 breakpoint0.61.11.8-0.6-1.01.3-1.0
Progressive ratio test 1 inactive lever presses1.43.74.81.1-2.12.2-2.1
Progressive ratio test 2 active lever presses0.81.11.8-0.8-1.01.3-1.1
Progressive ratio test 2 breakpoint0.91.21.8-0.8-0.91.4-1.1
Progressive ratio test 2 inactive lever presses0.20.50.80.2-0.80.9-0.7
Incentive Sensitization - Responses0.20.61.0-0.5-1.00.9-0.7
Incentive Sensitization - Breakpoint0.20.50.8-0.6-0.90.8-0.6
Sum of active levers in priming session hrs 5-60.80.72.4-1.50.70.2-0.3
Progressive ratio0.00.00.10.2-0.10.2-0.3
Food seeking constrained by brief footshock9.812.315.63.5-3.93.3-3.2
Seeking ratio, punishment vs. effort1.22.63.81.7-1.91.4-1.3
Retroperitoneal fat weight0.52.32.8-1.41.7-1.51.5
Reaction time number correct0.10.50.70.6-0.60.8-0.8
Reaction time mean minus median0.42.43.90.31.3-2.01.9
Reaction time mean minus median AUC0.11.01.50.90.5-1.21.2
Reaction time num false alarms0.10.20.4-0.10.3-0.60.6
Reaction time num false alarms AUC0.10.20.40.6-0.50.3-0.2
Reaction time trials correct on left0.10.50.70.6-0.60.8-0.8
Reaction time trials on left0.10.40.60.5-0.50.7-0.8
Reaction time mean2.55.46.8-1.62.4-2.62.6
Reaction time mean AUC2.56.17.7-1.72.5-2.82.8
Median of all reaction times3.45.45.9-2.22.4-2.32.3
Reaction time omissions1.42.23.2-1.81.7-1.21.1
Reaction time false alarm rate0.20.30.5-0.40.4-0.60.7
Reaction time premature initiation rate2.84.45.0-2.22.2-1.92.0
Reaction time premature initiations0.82.33.0-1.71.7-1.31.3
Std. dev. reaction times1.13.75.5-0.61.9-2.32.3
Reaction time trials completed0.10.40.60.5-0.50.7-0.8
Reaction time trials AUC0.10.40.50.5-0.40.7-0.7
Run reversals in cocaine runway, females0.40.40.70.40.7-0.80.6
Run reversals in cocaine runway, males0.10.10.1-0.30.2-0.20.2
Latency to leave start box in cocaine runway0.20.30.80.9-0.50.2-0.3
Latency to leave start box in cocaine runway, F0.00.10.2-0.10.00.3-0.4
Latency to leave start box in cocaine runway, M1.71.62.71.6-1.50.9-0.9
Std. dev. time between licks in bursts0.20.40.5-0.70.7-0.50.6
Total sessions with >9 infusions1.62.03.20.1-1.61.8-1.5
Short access day 1 total inactive lever presses1.63.24.11.0-2.02.0-1.9
Short access day 10 total inactive lever presses0.10.41.01.0-0.60.3-0.3
Short access day 1 total infusions1.42.84.40.3-1.92.1-1.8
Short access day 10 total infusions0.91.42.50.0-1.11.6-1.4
Short access total infusions1.42.03.5-0.3-1.41.9-1.6
Short access day 1 locomotion0.30.51.0-1.00.30.7-0.5
Short access day 10 total locomotion0.31.41.7-1.31.3-1.01.1
Short access total locomotion0.10.20.4-0.50.00.6-0.5
One hour access (0.3 mA shock)0.91.01.40.5-1.01.2-1.2
Compulsive drug intake0.20.20.40.40.4-0.60.5
One hour access (shock baseline)0.71.93.00.3-1.31.7-1.6
Social response proportion2.43.13.8-1.72.0-1.71.6
Social responses0.40.51.01.0-0.70.5-0.5
Social time0.00.00.0-0.20.00.0-0.1
Soleus weight1.13.35.40.6-1.62.2-2.3
Bone: stiffness2.03.77.62.8-2.11.2-1.2
Tibialis anterior weight6.923.934.65.9-5.34.1-4.0
Time to tail flick, vehicle, before self-admin0.91.12.1-0.71.4-1.10.9
Time to tail flick, vehicle, after self-admin0.00.00.1-0.10.0-0.20.3
Time to tail flick, test, before self-admin0.30.30.70.8-0.70.3-0.3
Time to tail flick, test, after self-admin0.60.72.11.50.0-0.50.5
Delta time to tail flick, vehicle, before/after SA0.20.20.60.2-0.80.4-0.3
Delta time to tail flick, test, before/after SA0.50.60.8-0.20.9-0.90.9
Tibia length0.61.62.60.6-1.21.5-1.6
Ambulatory time before self-admin1.64.86.02.1-2.42.1-2.1
Ambulatory time after self-admin0.40.61.20.7-1.10.6-0.6
Bone: tissue strength0.00.00.10.4-0.20.1-0.1
Total heroin consumption0.50.60.9-0.9-0.10.9-0.8
Bone: trabecular number0.20.41.41.2-0.4-0.10.2
Bone: trabecular spacing0.10.10.2-0.10.3-0.40.4
Bone: trabecular thickness0.40.50.7-0.60.8-0.80.8
Bone: trabecular tissue density2.13.75.92.4-2.11.5-1.4
Water consumed over 24 hours0.30.61.01.0-1.00.4-0.4
Number of responses in last shaping day2.53.36.00.0-1.42.4-2.3