Sox7

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Sox7 0.14 0.08 9.2e-11 0.08 0.09 0.09 0.08 3.2e-09 3.4e-10 8.3e-10 1.9e-09
2 Liver gene expression Sox7 0.03 0.02 5.8e-03 -0 0 -0 0 4.9e-01 2.2e-01 6.4e-01 3.7e-01
3 NAcc gene expression Sox7 0.1 0.07 1.1e-03 0.01 0.02 0.01 0.02 4.4e-02 1.1e-03 3.0e-02 5.4e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.71.12.1-0.71.40.9
Area under the delay curve5.45.710.22.2-3.2-1.4
BMI with tail1.03.14.72.1-2.2-0.3
BMI without tail0.10.20.5-0.70.2-0.4
Body weight0.93.78.02.8-1.60.7
Weight adjusted by age1.21.42.01.40.51.3
Bone surface0.30.61.0-0.41.00.7
Bone volume0.00.10.1-0.20.40.1
Breakpoint value in progressive ratio session0.60.61.40.2-1.2-0.7
Number of licking bursts0.30.30.80.4-0.9-0.3
Context. condit. distance diff. score2.83.47.0-1.4-1.0-2.7
Locomotion velocity, session 10.10.10.30.3-0.10.5
Locomotion distance, session 10.20.30.7-0.10.50.8
Locomotion velocity, session 20.20.20.40.5-0.60.2
Locomotion distance, session 21.01.42.6-0.31.21.6
Locomotion velocity, session 30.60.71.20.90.11.1
Locomotion distance, session 30.20.20.30.6-0.50.2
Stereotopy head waving bouts, day 31.41.72.5-0.41.61.6
Stereotopy head waving duration, day 31.11.32.90.70.81.7
Locomotion velocity, session 71.41.62.4-1.5-0.3-1.5
Locomotion distance, session 71.72.14.3-2.10.3-1.4
Stereotopy head waving bouts, day 70.91.12.11.4-0.41.0
Stereotopy head waving duration, day 71.41.74.02.0-0.51.0
Locomotion velocity, session 80.30.40.70.2-0.8-0.7
Locomotion distance, session 80.30.50.8-0.9-0.2-0.8
Degree of sensitization distance3.73.78.1-2.90.7-1.6
Degree of sensitization stereotypy1.01.12.01.4-1.2-0.2
Conditioned locomotion0.80.92.2-0.5-0.5-1.5
Cocaine response after cond. corrected3.43.97.9-0.2-1.9-2.8
Cocaine response after cond. not corrected2.62.95.6-0.1-1.7-2.4
Cocaine response before conditioning0.91.02.30.40.81.5
Saline control response0.60.71.6-0.30.71.3
Bone: connectivity density2.33.66.9-1.32.61.5
Bone: cortical apparent density0.60.71.20.2-1.0-1.1
Bone: cortical area1.32.03.80.9-2.0-1.1
Bone: cortical porosity1.41.53.31.8-0.90.6
Bone: cortical porosity0.91.02.21.5-0.80.4
Bone: cortical thickness1.72.85.61.4-2.4-0.9
Bone: cortical thickness3.54.17.80.3-2.8-2.1
Bone: cortical tissue density0.60.71.30.1-0.9-1.1
Condit. Reinf. active minus inactive responses0.50.61.30.50.41.2
Condit. Reinf. active-inactive response ratio0.20.20.4-0.20.60.6
Condit. Reinf. active responses0.40.40.90.70.10.9
Condit. Reinf. inactive responses0.10.10.20.4-0.10.4
Incentive salience index mean1.11.32.71.6-0.51.1
Condit. Reinf. lever presses1.52.04.42.1-1.10.6
Condit. Reinf. active minus inactive responses0.10.10.4-0.60.1-0.1
Condit. Reinf. active-inactive response ratio0.10.10.1-0.40.10.2
Condit. Reinf. active responses0.20.20.4-0.70.0-0.4
Condit. Reinf. inactive responses0.50.61.3-1.10.5-0.6
Condit. Reinf. lever presses1.21.73.40.41.21.8
Condit. Reinf. lever reinforcers received0.00.00.1-0.40.0-0.1
Conditioned reinforcement - actives4.94.910.3-3.21.8-1.0
Conditioned reinforcement - inactives1.92.13.5-1.41.90.9
Conditioned locomotion2.42.94.9-1.9-0.4-2.2
Patch foraging indifference point 0 sec0.50.71.40.50.81.2
Patch foraging indifference point AUC1.01.11.7-0.9-0.9-1.3
Delay disc. indifference point, 0s delay0.20.20.40.2-0.5-0.6
Delay disc. indifference point, 16s delay4.54.68.51.6-2.9-1.7
Delay disc. indifference point, 2s delay0.50.50.90.8-0.9-0.4
Delay disc. indifference point, 24s delay5.75.510.41.5-3.2-1.9
Delay disc. indifference point, 4s delay3.33.55.22.3-2.3-0.5
Delay disc. indifference point, 8s delay5.65.810.02.4-3.2-1.3
Indifference point function ln k0.81.12.91.7-0.20.5
Indifference point function log k0.81.12.91.7-0.20.5
Patch foraging total patch changes 0 sec0.40.61.00.90.31.0
Patch foraging total patch changes 12 sec0.10.10.3-0.1-0.00.5
Patch foraging total patch changes 18 sec0.60.71.2-1.0-0.3-1.1
Patch foraging total patch changes 24 sec0.00.00.1-0.00.20.3
Patch foraging total patch changes 6 sec0.00.00.0-0.10.10.2
Patch foraging time to switch 0 sec0.10.10.2-0.50.30.1
Patch foraging water rate 0 sec0.71.02.31.5-0.90.1
Patch foraging water rate 12 sec0.30.51.11.0-0.6-0.1
Patch foraging water rate 18 sec2.02.76.02.4-1.50.0
Patch foraging water rate 24 sec0.50.61.10.2-0.9-1.0
Patch foraging water rate 6 sec0.71.02.51.6-0.60.4
Seeking ratio, delayed vs. immediate footshock0.20.30.70.2-0.2-0.9
Distance traveled before self-admin0.00.10.1-0.00.4-0.1
Distance traveled after self-admin0.40.41.10.0-0.3-1.1
Extensor digitorum longus weight4.417.133.55.8-4.2-0.2
Bone: elastic displacement0.50.60.7-0.60.80.8
Bone: elastic work0.50.61.50.60.31.2
Bone: endosteal estimation0.00.10.1-0.20.3-0.0
Bone: endosteal perimeter0.20.50.9-0.71.00.1
Epididymis fat weight0.10.30.5-0.4-0.4-0.7
Delta time in closed arm before/after self-admin0.10.10.30.00.2-0.5
Delta time in open arm before/after self-admin0.20.20.2-0.40.40.4
Diff in mean of infusions in LGA sessions1.31.42.61.6-0.61.1
Delay discount exponential model param5.86.110.8-2.33.31.4
Extinction: sum of active levers before priming0.30.30.5-0.7-0.2-0.7
Active lever presses in extinction session 60.30.30.8-0.90.4-0.0
Bone: final force1.32.03.41.3-1.8-1.0
Bone: final moment0.81.42.11.3-1.4-0.5
Food consumed during 24 hour testing period0.30.30.70.20.60.8
Glucose0.10.20.4-0.2-0.6-0.3
Heart weight0.10.10.3-0.20.2-0.5
Delay discount hyperbolic model param5.25.59.6-2.43.11.1
Intermittent access intake day 1-15 change1.01.01.5-1.21.10.3
Intermittent access intake escalation0.90.91.7-1.30.90.1
Intermittent access intake escalation 20.50.50.8-0.90.80.2
Intermitt. access day 1 inactive lever presses1.31.42.2-1.01.50.9
Intermitt. access day 15 inactive lever presses1.82.03.40.41.61.9
Intermitt. access escalation Index0.50.41.0-1.0-0.1-0.5
Intermittent access day 1 total infusions0.40.50.7-0.7-0.4-0.8
Intermittent access day 15 total infusions1.41.53.9-2.00.7-0.5
Intermittent access terminal intake (last 3 days)1.01.12.9-1.70.6-0.2
Intermittent access total infusions1.21.42.6-1.6-0.1-1.2
Intermittent access day 1 locomotion0.30.30.60.2-0.8-0.5
Intermittent access day 15 total locomotion0.40.41.1-1.10.4-0.2
Intermittent access total locomotion0.10.10.1-0.3-0.3-0.3
Intermittent access standard deviation0.91.01.3-1.11.10.7
Left kidney weight0.71.94.32.1-0.01.2
Right kidney weight0.92.66.02.40.01.3
Cocaine induced anxiety0.20.20.50.30.30.7
Post-drug Anxiety1.61.73.30.81.21.8
Baseline Anxiety0.10.20.20.50.20.5
Tail length0.61.73.3-1.31.80.6
Length with tail0.31.11.61.10.61.3
Length without tail2.04.310.13.2-1.31.1
Times rat made contact with spout0.00.00.0-0.10.10.1
Lifetime Intake1.31.53.0-1.70.2-1.2
Liver weight, left1.11.83.92.0-1.20.1
Liver weight, right0.71.11.91.4-1.20.3
Locomotor activity1.72.65.42.3-0.21.6
Locomotor testing distance1.01.73.10.51.31.8
Locomotor testing rearing4.57.011.2-0.33.13.3
Locomotion in novel chamber0.30.40.90.9-0.40.3
Locomotion in novel chamber post-restriction0.10.10.2-0.1-0.50.0
Fecal boli incidents, locomotor time 10.30.40.7-0.1-0.6-0.8
Change in fecal boli incidents, locomotor task0.80.81.50.10.91.2
Time >=10cm from walls, locomotor time 11.51.52.4-0.11.51.5
Bouts of movement, locomotor time 10.20.30.40.4-0.6-0.5
Total resting periods, locomotor time 10.60.71.1-0.0-1.0-1.1
Rest time, locomotor task time 10.91.01.50.3-1.2-1.1
Distance moved, locomotor task time 10.80.91.3-0.71.20.9
Vertical activity count, locomotor time 10.91.01.90.11.01.4
Time >=10cm from walls, locomotor time 20.50.51.10.11.00.7
Bouts of movement, locomotor time 22.12.24.01.4-2.0-0.9
Total resting periods, locomotor time 22.52.75.01.6-2.2-0.8
Rest time, locomotor task time 21.51.84.10.7-2.0-0.8
Distance moved, locomotor task time 20.30.30.9-0.40.90.2
Vertical activity count, locomotor time 20.10.10.2-0.00.4-0.0
Light reinforcement 10.00.00.10.3-0.00.2
Light reinforcement 20.40.51.2-0.5-0.2-1.1
Bone: marrow area0.00.10.1-0.30.3-0.1
Bone: maximum diameter0.71.32.30.3-1.5-1.2
Bone: maximum force1.32.24.11.4-2.0-0.9
Bone: maximum moment0.91.52.51.4-1.6-0.4
Mean time between licks in bursts2.23.05.0-2.02.20.0
Mean num. licks in bursts0.30.30.7-0.50.90.2
Cd content in liver0.70.71.3-0.51.10.8
Co content in liver2.32.74.30.8-2.1-1.8
Cu content in liver0.30.40.70.8-0.10.6
Fe content in liver1.01.22.2-0.81.50.9
K content in liver0.50.51.1-0.5-0.4-1.0
Mg content in liver0.50.50.9-0.90.2-0.7
Mn content in liver1.01.12.0-1.2-0.1-1.4
Na content in liver4.74.98.52.9-0.32.5
Rb content in liver0.91.11.6-1.31.20.2
Se content in liver0.20.30.50.20.60.7
Sr content in liver2.62.43.9-1.32.01.2
Zn content in liver1.71.93.61.90.11.4
Bone: minimum diameter0.30.51.10.6-1.1-0.4
Time in familiar zone, hab. session 10.70.71.2-0.6-0.6-1.1
Time in novel zone, hab. session 10.70.71.20.9-0.21.1
Total zone transitions, hab. session 10.30.51.00.5-1.0-0.4
Total locomotion distance, hab. session 10.00.00.0-0.2-0.20.1
Locomotion velocity, hab. session 10.00.00.10.1-0.10.3
Time in familiar zone, hab. session 20.40.40.8-0.6-0.2-0.9
Time in novel zone, hab. session 20.30.30.90.10.30.9
Total zone transitions, hab. session 20.30.40.80.9-0.5-0.0
Total locomotion distance, hab. session 20.20.30.50.5-0.7-0.4
Locomotion velocity, hab. session 20.40.50.70.8-0.9-0.3
Novel to familiar place preference ratio0.40.40.7-0.80.50.6
Novelty place preference0.50.50.6-0.80.60.7
Time in novel zone, NPP test0.60.60.9-0.60.70.9
Total zone transitions, NPP test0.00.10.10.3-0.2-0.2
Total locomotion distance, NPP test0.81.01.6-1.21.30.3
Locomotion velocity, NPP test0.70.91.5-1.21.10.1
Intraocular pressure4.25.87.9-2.52.81.8
Delta distance traveled before/after self-admin0.10.10.20.2-0.4-0.0
Delta ambulatory time before/after self-admin0.10.10.2-0.2-0.4-0.3
Parametrial fat weight2.34.48.6-2.90.3-2.1
Pavlov. Cond. lever latency0.91.12.0-1.41.10.3
Pavlov. Cond. magazine entry latency0.50.61.41.2-0.30.6
Pavlov. Cond. change in total contacts1.81.93.92.0-1.20.5
Pavlov. Cond. index score2.12.66.02.5-1.40.2
Pavlov. Cond. latency score1.51.94.42.1-1.10.2
Pavlov. Cond. lever contacts1.31.63.71.9-1.00.1
Pavlov. Cond. magazine entry number1.11.43.1-1.80.7-0.6
Pavlov. Cond. intertrial magazine entries0.00.00.10.30.20.1
Pavlov. Cond. lever-magazine prob. diff.2.53.17.02.6-1.50.2
Pavlov. Cond. response bias2.02.45.42.3-1.30.1
Pavlov. Cond. lever latency1.92.64.7-1.6-0.7-2.2
Pavlov. Cond. magazine entry latency1.31.53.51.9-0.90.4
Pavlov. Cond. change in total contacts2.23.05.12.3-0.12.0
Pavlov. Cond. index score2.02.54.82.2-0.21.7
Pavlov. Cond. latency score2.02.54.52.1-0.01.7
Pavlov. Cond. lever contacts2.12.85.71.31.02.4
Pavlov. Cond. magazine entry number0.60.81.6-1.20.9-0.0
Pavlov. Cond. intertrial magazine entries5.16.712.4-3.52.70.1
Pavlov. Cond. lever-magazine prob. diff.1.82.34.72.2-0.31.5
Pavlov. Cond. response bias1.62.23.31.80.11.8
Time in closed arm before self-admin1.92.15.12.3-1.10.3
Time in closed arm after self-admin1.71.83.01.7-1.2-0.9
Time in open arm before self-admin0.91.01.8-1.41.10.3
Time in open arm after self-admin1.51.62.4-1.21.51.0
Bone: periosteal estimation0.20.40.70.2-0.8-0.7
Bone: periosteal perimeter0.10.10.20.0-0.4-0.5
Bone: post-yield work3.95.38.9-0.7-2.6-3.0
Progressive ratio test 1 active lever presses0.70.81.2-0.7-0.8-1.1
Progressive ratio test 1 breakpoint0.70.81.0-0.8-0.8-1.0
Progressive ratio test 1 inactive lever presses1.11.21.7-1.31.30.6
Progressive ratio test 2 active lever presses1.92.14.8-2.21.1-0.4
Progressive ratio test 2 breakpoint1.41.63.4-1.81.2-0.1
Progressive ratio test 2 inactive lever presses1.82.13.0-1.71.70.7
Incentive Sensitization - Responses3.13.25.3-1.82.30.9
Incentive Sensitization - Breakpoint3.53.66.2-1.82.51.1
Sum of active levers in priming session hrs 5-60.50.51.0-1.00.1-0.6
Progressive ratio0.50.61.00.80.31.0
Food seeking constrained by brief footshock0.81.02.2-0.2-0.9-1.5
Seeking ratio, punishment vs. effort0.91.22.4-0.2-1.0-1.5
Retroperitoneal fat weight0.72.43.8-1.8-0.5-2.0
Reaction time number correct0.40.51.0-0.61.00.5
Reaction time mean minus median0.71.02.40.30.61.6
Reaction time mean minus median AUC0.60.81.80.20.81.3
Reaction time num false alarms0.50.71.11.00.31.0
Reaction time num false alarms AUC0.30.50.91.00.10.7
Reaction time trials correct on left0.40.51.0-0.61.00.5
Reaction time trials on left0.50.71.2-0.71.10.5
Reaction time mean0.60.81.3-0.31.11.0
Reaction time mean AUC0.70.91.30.01.11.1
Median of all reaction times0.40.61.2-0.41.10.6
Reaction time omissions2.43.35.7-1.92.40.6
Reaction time false alarm rate0.50.61.51.2-0.60.2
Reaction time premature initiation rate0.20.20.50.3-0.7-0.2
Reaction time premature initiations0.00.00.0-0.1-0.2-0.0
Std. dev. reaction times0.50.71.1-0.40.91.1
Reaction time trials completed0.50.71.2-0.71.10.5
Reaction time trials AUC0.50.81.4-0.81.20.5
Run reversals in cocaine runway, females0.00.00.1-0.20.20.1
Run reversals in cocaine runway, males1.61.52.51.6-1.20.8
Latency to leave start box in cocaine runway0.70.81.2-1.11.10.1
Latency to leave start box in cocaine runway, F0.50.60.8-0.40.80.9
Latency to leave start box in cocaine runway, M1.11.02.1-1.01.40.1
Std. dev. time between licks in bursts1.21.42.7-1.11.60.5
Total sessions with >9 infusions1.01.11.7-1.31.2-0.0
Short access day 1 total inactive lever presses0.30.30.8-0.90.2-0.2
Short access day 10 total inactive lever presses0.50.51.1-1.10.70.1
Short access day 1 total infusions1.61.73.6-1.91.0-0.8
Short access day 10 total infusions0.60.61.0-0.3-1.0-0.9
Short access total infusions0.40.40.9-1.00.2-0.6
Short access day 1 locomotion0.20.20.3-0.30.5-0.4
Short access day 10 total locomotion0.40.41.01.0-0.10.5
Short access total locomotion0.20.30.40.40.40.7
One hour access (0.3 mA shock)1.01.12.2-1.5-0.3-1.1
Compulsive drug intake0.20.20.50.2-0.7-0.5
One hour access (shock baseline)1.11.33.3-1.80.5-0.6
Social response proportion1.92.14.6-2.11.2-0.5
Social responses1.82.45.0-2.21.4-0.4
Social time1.41.83.3-0.01.81.5
Soleus weight0.92.53.71.0-1.9-1.7
Bone: stiffness1.21.92.71.4-1.6-0.9
Tibialis anterior weight4.415.032.05.7-3.60.5
Time to tail flick, vehicle, before self-admin1.31.32.31.5-0.61.1
Time to tail flick, vehicle, after self-admin0.50.60.80.9-0.80.4
Time to tail flick, test, before self-admin0.40.40.80.10.70.9
Time to tail flick, test, after self-admin2.52.64.0-2.01.90.3
Delta time to tail flick, vehicle, before/after SA0.30.30.5-0.70.2-0.6
Delta time to tail flick, test, before/after SA1.31.22.2-1.51.1-0.4
Tibia length2.05.510.22.11.33.2
Ambulatory time before self-admin0.30.30.60.2-0.4-0.8
Ambulatory time after self-admin0.80.91.20.6-1.0-1.1
Bone: tissue strength1.21.21.8-0.71.41.1
Total heroin consumption0.20.20.30.5-0.20.5
Bone: trabecular number0.91.42.5-1.01.60.8
Bone: trabecular spacing1.82.34.21.3-2.0-1.0
Bone: trabecular thickness0.30.40.80.9-0.60.1
Bone: trabecular tissue density1.41.93.41.8-1.5-0.1
Water consumed over 24 hours0.70.81.71.3-0.30.8
Number of responses in last shaping day0.10.10.1-0.30.20.2