Snx11

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver intron excision ratio chr10_82246133_82249076 0.03 0.03 4.0e-03 0.03 0.02 0.02 0.02 7.7e-04 4.7e-03 1.5e-03 3.9e-03
2 Adipose gene expression Snx11 0.03 0.03 1.7e-03 0.02 0.01 0.01 0.02 1.5e-03 8.8e-03 4.0e-02 2.3e-03
3 Liver isoform ratio NM_001199169.1 0.02 0.02 5.3e-03 0.02 0.01 0.01 0.01 5.0e-03 7.1e-03 8.9e-03 1.1e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density2.03.43.71.9-1.91.7
Area under the delay curve0.40.40.6-0.50.6-0.8
BMI with tail14.148.853.07.3-7.36.4
BMI without tail0.72.22.91.7-1.71.0
Body weight0.94.15.12.3-2.21.5
Weight adjusted by age0.71.01.2-1.10.9-1.0
Bone surface0.61.11.21.1-1.01.0
Bone volume1.83.23.61.9-1.81.7
Breakpoint value in progressive ratio session2.53.03.7-1.61.6-1.9
Number of licking bursts0.10.10.2-0.20.4-0.5
Context. condit. distance diff. score0.20.20.30.5-0.40.6
Locomotion velocity, session 10.20.30.40.5-0.60.4
Locomotion distance, session 12.93.74.4-1.81.8-2.1
Locomotion velocity, session 21.21.41.8-1.11.0-1.3
Locomotion distance, session 23.95.57.0-2.22.1-2.6
Locomotion velocity, session 30.00.00.00.00.0-0.0
Locomotion distance, session 33.53.84.0-1.91.9-2.0
Stereotopy head waving bouts, day 34.95.85.92.4-2.42.4
Stereotopy head waving duration, day 34.04.84.92.2-2.22.2
Locomotion velocity, session 71.61.82.3-1.21.2-1.5
Locomotion distance, session 75.56.98.0-2.62.5-2.8
Stereotopy head waving bouts, day 70.60.61.10.6-0.71.0
Stereotopy head waving duration, day 70.30.40.70.5-0.50.9
Locomotion velocity, session 80.00.00.0-0.0-0.0-0.1
Locomotion distance, session 81.01.51.9-1.11.1-1.4
Degree of sensitization distance0.00.00.10.0-0.1-0.4
Degree of sensitization stereotypy0.00.00.1-0.30.20.1
Conditioned locomotion1.21.41.81.1-1.11.3
Cocaine response after cond. corrected5.66.88.52.4-2.42.9
Cocaine response after cond. not corrected3.23.75.31.8-1.72.3
Cocaine response before conditioning2.42.93.3-1.71.8-1.6
Saline control response0.40.50.7-0.60.8-0.7
Bone: connectivity density0.30.40.50.6-0.60.7
Bone: cortical apparent density6.89.311.5-3.43.3-2.4
Bone: cortical area0.10.10.20.4-0.40.1
Bone: cortical porosity0.40.50.70.5-0.60.9
Bone: cortical porosity0.60.60.90.7-0.80.9
Bone: cortical thickness0.40.60.7-0.70.8-0.9
Bone: cortical thickness0.60.71.0-0.91.0-0.6
Bone: cortical tissue density7.410.012.3-3.53.4-2.4
Condit. Reinf. active minus inactive responses0.10.10.2-0.40.4-0.3
Condit. Reinf. active-inactive response ratio0.30.30.40.6-0.50.6
Condit. Reinf. active responses0.10.10.2-0.30.4-0.2
Condit. Reinf. inactive responses0.40.50.7-0.80.8-0.4
Incentive salience index mean0.30.30.4-0.50.6-0.6
Condit. Reinf. lever presses0.71.01.1-0.91.0-1.0
Condit. Reinf. active minus inactive responses0.00.00.10.2-0.3-0.1
Condit. Reinf. active-inactive response ratio0.40.50.60.7-0.60.8
Condit. Reinf. active responses0.00.10.1-0.20.1-0.4
Condit. Reinf. inactive responses0.60.81.2-0.80.8-1.1
Condit. Reinf. lever presses0.91.21.4-1.21.1-1.0
Condit. Reinf. lever reinforcers received0.20.30.5-0.50.4-0.7
Conditioned reinforcement - actives0.40.70.90.7-0.90.9
Conditioned reinforcement - inactives0.10.10.40.20.1-0.6
Conditioned locomotion3.54.65.41.9-2.32.2
Patch foraging indifference point 0 sec0.81.61.91.2-1.21.4
Patch foraging indifference point AUC0.20.30.4-0.60.6-0.3
Delay disc. indifference point, 0s delay1.41.61.9-1.11.2-1.4
Delay disc. indifference point, 16s delay0.40.40.60.8-0.70.5
Delay disc. indifference point, 2s delay0.20.20.5-0.30.4-0.7
Delay disc. indifference point, 24s delay0.20.20.2-0.50.5-0.4
Delay disc. indifference point, 4s delay3.63.74.1-1.82.0-2.0
Delay disc. indifference point, 8s delay0.00.00.1-0.30.2-0.2
Indifference point function ln k0.00.00.0-0.00.10.1
Indifference point function log k0.00.00.0-0.00.10.1
Patch foraging total patch changes 0 sec0.81.61.91.2-1.21.4
Patch foraging total patch changes 12 sec0.20.30.80.0-0.10.9
Patch foraging total patch changes 18 sec1.01.52.21.1-1.11.5
Patch foraging total patch changes 24 sec1.22.12.61.3-1.41.6
Patch foraging total patch changes 6 sec0.50.71.50.6-0.51.2
Patch foraging time to switch 0 sec0.00.10.10.2-0.30.3
Patch foraging water rate 0 sec0.71.51.61.3-1.31.1
Patch foraging water rate 12 sec0.00.10.2-0.20.4-0.2
Patch foraging water rate 18 sec0.10.20.2-0.30.4-0.5
Patch foraging water rate 24 sec0.71.01.11.0-1.11.0
Patch foraging water rate 6 sec0.00.00.00.20.0-0.1
Seeking ratio, delayed vs. immediate footshock0.40.50.70.7-0.70.8
Distance traveled before self-admin0.00.10.1-0.20.3-0.2
Distance traveled after self-admin0.70.81.80.7-0.41.3
Extensor digitorum longus weight0.00.10.30.4-0.5-0.0
Bone: elastic displacement0.30.30.50.6-0.70.2
Bone: elastic work0.00.00.00.1-0.1-0.2
Bone: endosteal estimation0.51.11.21.0-1.11.0
Bone: endosteal perimeter0.91.92.41.4-1.51.1
Epididymis fat weight0.10.30.30.6-0.60.4
Delta time in closed arm before/after self-admin0.00.00.0-0.20.20.1
Delta time in open arm before/after self-admin1.81.82.0-1.41.4-1.2
Diff in mean of infusions in LGA sessions0.20.30.5-0.30.7-0.5
Delay discount exponential model param0.60.60.80.7-0.70.9
Extinction: sum of active levers before priming0.40.40.7-0.90.7-0.4
Active lever presses in extinction session 60.20.20.40.6-0.60.2
Bone: final force0.30.50.70.6-0.60.8
Bone: final moment0.30.50.80.7-0.60.9
Food consumed during 24 hour testing period1.01.41.9-1.41.3-0.8
Glucose1.01.51.91.4-1.40.8
Heart weight1.62.52.91.7-1.71.4
Delay discount hyperbolic model param0.50.60.80.7-0.70.9
Intermittent access intake day 1-15 change0.51.11.51.2-1.10.8
Intermittent access intake escalation0.40.91.31.1-1.00.7
Intermittent access intake escalation 22.32.63.41.8-1.61.3
Intermitt. access day 1 inactive lever presses0.20.61.4-0.30.5-1.2
Intermitt. access day 15 inactive lever presses1.12.23.11.8-1.51.1
Intermitt. access escalation Index0.30.51.40.1-0.21.2
Intermittent access day 1 total infusions0.20.30.4-0.70.5-0.2
Intermittent access day 15 total infusions0.00.00.00.1-0.10.2
Intermittent access terminal intake (last 3 days)0.20.30.40.6-0.50.6
Intermittent access total infusions0.00.00.00.0-0.00.2
Intermittent access day 1 locomotion0.10.10.2-0.40.2-0.2
Intermittent access day 15 total locomotion0.10.20.30.3-0.50.5
Intermittent access total locomotion0.40.50.70.6-0.80.7
Intermittent access standard deviation1.83.84.92.2-2.11.5
Left kidney weight0.00.00.00.2-0.2-0.0
Right kidney weight0.41.72.11.4-1.41.0
Cocaine induced anxiety0.10.20.30.4-0.50.3
Post-drug Anxiety0.00.00.1-0.10.1-0.2
Baseline Anxiety0.60.71.0-0.70.8-1.0
Tail length12.850.052.9-7.37.2-6.7
Length with tail5.021.822.4-4.74.7-4.6
Length without tail0.10.20.20.4-0.40.4
Times rat made contact with spout0.00.00.0-0.10.2-0.1
Lifetime Intake0.00.00.00.0-0.00.2
Liver weight, left0.10.10.3-0.10.2-0.5
Liver weight, right0.10.10.2-0.40.4-0.1
Locomotor activity0.91.41.91.1-1.01.4
Locomotor testing distance1.73.14.01.6-1.72.0
Locomotor testing rearing0.10.20.30.4-0.30.5
Locomotion in novel chamber0.81.01.1-1.11.0-0.9
Locomotion in novel chamber post-restriction0.61.01.31.1-1.20.8
Fecal boli incidents, locomotor time 13.14.55.32.3-2.21.8
Change in fecal boli incidents, locomotor task3.33.23.7-1.91.8-1.7
Time >=10cm from walls, locomotor time 10.40.40.7-0.80.7-0.3
Bouts of movement, locomotor time 10.00.00.10.1-0.00.2
Total resting periods, locomotor time 10.10.10.20.4-0.20.4
Rest time, locomotor task time 10.40.50.90.9-0.60.3
Distance moved, locomotor task time 10.91.32.1-1.41.3-0.6
Vertical activity count, locomotor time 10.30.71.3-1.10.8-0.0
Time >=10cm from walls, locomotor time 20.60.91.3-1.11.1-0.6
Bouts of movement, locomotor time 20.00.10.10.3-0.20.3
Total resting periods, locomotor time 20.00.10.10.3-0.10.2
Rest time, locomotor task time 21.11.41.7-1.01.2-1.3
Distance moved, locomotor task time 20.10.20.4-0.60.30.0
Vertical activity count, locomotor time 20.10.10.3-0.3-0.00.6
Light reinforcement 10.10.30.40.5-0.60.6
Light reinforcement 20.10.10.30.1-0.10.5
Bone: marrow area0.40.80.90.8-1.00.9
Bone: maximum diameter0.81.61.71.3-1.31.2
Bone: maximum force0.50.91.20.9-0.81.1
Bone: maximum moment0.61.11.50.9-0.91.2
Mean time between licks in bursts0.00.10.10.3-0.3-0.1
Mean num. licks in bursts0.00.00.1-0.20.1-0.0
Cd content in liver0.00.00.00.10.00.2
Co content in liver0.00.00.0-0.10.10.1
Cu content in liver2.12.43.8-1.71.9-0.8
Fe content in liver0.30.30.4-0.60.6-0.5
K content in liver0.10.10.10.4-0.20.1
Mg content in liver2.22.22.5-1.41.6-1.5
Mn content in liver4.14.64.8-2.12.1-2.2
Na content in liver2.32.42.61.6-1.51.6
Rb content in liver0.50.60.9-0.91.0-0.3
Se content in liver0.50.50.70.9-0.70.6
Sr content in liver2.01.71.8-1.31.3-1.4
Zn content in liver0.20.20.50.7-0.40.2
Bone: minimum diameter0.10.10.20.3-0.50.3
Time in familiar zone, hab. session 10.80.80.9-0.81.0-0.8
Time in novel zone, hab. session 13.73.74.01.9-1.92.0
Total zone transitions, hab. session 16.79.49.4-3.13.0-3.1
Total locomotion distance, hab. session 13.14.44.7-2.02.2-2.1
Locomotion velocity, hab. session 14.05.76.4-2.32.3-2.5
Time in familiar zone, hab. session 20.30.40.50.6-0.50.7
Time in novel zone, hab. session 20.10.10.3-0.20.1-0.5
Total zone transitions, hab. session 21.82.32.7-1.61.6-1.4
Total locomotion distance, hab. session 20.10.10.2-0.30.3-0.5
Locomotion velocity, hab. session 20.10.20.3-0.40.4-0.6
Novel to familiar place preference ratio0.70.70.7-0.80.8-0.9
Novelty place preference0.90.90.9-1.01.0-1.0
Time in novel zone, NPP test0.60.70.7-0.90.9-0.8
Total zone transitions, NPP test4.26.16.5-2.52.6-2.4
Total locomotion distance, NPP test1.31.72.0-1.21.3-1.4
Locomotion velocity, NPP test2.02.73.2-1.51.7-1.8
Intraocular pressure1.42.02.4-1.61.6-1.0
Delta distance traveled before/after self-admin0.50.61.30.6-0.31.1
Delta ambulatory time before/after self-admin0.50.61.20.7-0.51.1
Parametrial fat weight0.10.41.00.1-0.21.0
Pavlov. Cond. lever latency1.21.61.91.2-1.21.4
Pavlov. Cond. magazine entry latency0.00.00.00.1-0.10.1
Pavlov. Cond. change in total contacts1.92.02.3-1.41.5-1.2
Pavlov. Cond. index score0.40.50.6-0.70.7-0.7
Pavlov. Cond. latency score0.50.70.9-0.80.7-0.9
Pavlov. Cond. lever contacts1.92.22.4-1.41.5-1.6
Pavlov. Cond. magazine entry number0.10.10.20.4-0.40.4
Pavlov. Cond. intertrial magazine entries0.70.81.0-0.91.0-0.7
Pavlov. Cond. lever-magazine prob. diff.0.40.50.5-0.70.7-0.7
Pavlov. Cond. response bias0.40.50.6-0.80.8-0.7
Pavlov. Cond. lever latency0.40.50.6-0.80.8-0.6
Pavlov. Cond. magazine entry latency0.40.40.8-0.50.5-0.9
Pavlov. Cond. change in total contacts0.10.10.10.4-0.30.1
Pavlov. Cond. index score0.10.20.30.5-0.50.1
Pavlov. Cond. latency score0.10.10.10.3-0.3-0.1
Pavlov. Cond. lever contacts0.30.40.50.7-0.70.6
Pavlov. Cond. magazine entry number0.00.10.20.0-0.00.4
Pavlov. Cond. intertrial magazine entries2.03.03.6-1.71.7-1.9
Pavlov. Cond. lever-magazine prob. diff.0.10.20.30.5-0.50.0
Pavlov. Cond. response bias0.50.70.80.9-0.80.8
Time in closed arm before self-admin1.52.02.71.6-1.51.0
Time in closed arm after self-admin1.31.31.71.3-1.01.1
Time in open arm before self-admin0.40.40.8-0.90.7-0.1
Time in open arm after self-admin3.13.44.2-2.01.9-1.5
Bone: periosteal estimation0.51.21.31.1-1.21.0
Bone: periosteal perimeter0.81.51.81.3-1.31.0
Bone: post-yield work0.20.40.90.3-0.21.0
Progressive ratio test 1 active lever presses0.40.50.9-0.90.7-0.3
Progressive ratio test 1 breakpoint0.30.40.8-0.90.6-0.3
Progressive ratio test 1 inactive lever presses0.00.10.10.4-0.2-0.0
Progressive ratio test 2 active lever presses0.10.10.1-0.20.3-0.3
Progressive ratio test 2 breakpoint0.10.10.1-0.30.3-0.3
Progressive ratio test 2 inactive lever presses0.00.00.00.2-0.0-0.1
Incentive Sensitization - Responses0.10.10.20.4-0.3-0.3
Incentive Sensitization - Breakpoint0.20.20.40.6-0.5-0.1
Sum of active levers in priming session hrs 5-63.63.33.6-1.91.9-1.6
Progressive ratio0.40.61.6-0.20.4-1.3
Food seeking constrained by brief footshock0.70.91.11.0-1.00.8
Seeking ratio, punishment vs. effort0.40.51.5-0.10.01.2
Retroperitoneal fat weight0.41.72.01.3-1.21.4
Reaction time number correct0.10.30.6-0.20.3-0.8
Reaction time mean minus median0.30.81.4-1.21.0-0.3
Reaction time mean minus median AUC0.41.11.9-1.41.1-0.5
Reaction time num false alarms0.20.20.3-0.50.6-0.3
Reaction time num false alarms AUC0.20.30.4-0.60.7-0.3
Reaction time trials correct on left0.10.30.6-0.20.3-0.8
Reaction time trials on left0.10.30.7-0.30.3-0.8
Reaction time mean0.10.20.4-0.40.20.6
Reaction time mean AUC0.10.20.3-0.50.30.5
Median of all reaction times0.20.30.90.1-0.20.9
Reaction time omissions0.40.61.1-1.10.8-0.4
Reaction time false alarm rate0.00.10.1-0.20.20.3
Reaction time premature initiation rate0.40.50.7-0.70.9-0.6
Reaction time premature initiations0.61.11.3-1.01.1-1.1
Std. dev. reaction times0.30.50.9-1.00.7-0.2
Reaction time trials completed0.10.30.7-0.30.3-0.8
Reaction time trials AUC0.10.30.6-0.30.3-0.8
Run reversals in cocaine runway, females0.10.10.1-0.40.40.0
Run reversals in cocaine runway, males0.50.50.60.8-0.80.6
Latency to leave start box in cocaine runway3.23.64.52.1-1.71.9
Latency to leave start box in cocaine runway, F3.54.05.02.2-1.91.9
Latency to leave start box in cocaine runway, M0.90.81.30.9-0.61.1
Std. dev. time between licks in bursts1.21.61.81.3-1.31.2
Total sessions with >9 infusions0.10.10.20.4-0.40.2
Short access day 1 total inactive lever presses3.44.55.9-1.82.1-2.4
Short access day 10 total inactive lever presses0.20.41.01.0-0.6-0.1
Short access day 1 total infusions0.10.10.10.3-0.20.3
Short access day 10 total infusions0.60.81.10.8-1.10.8
Short access total infusions0.20.30.40.4-0.50.6
Short access day 1 locomotion2.02.43.11.8-1.71.1
Short access day 10 total locomotion1.63.04.31.8-2.11.2
Short access total locomotion1.82.23.01.6-1.71.0
One hour access (0.3 mA shock)0.30.40.5-0.70.7-0.4
Compulsive drug intake4.25.06.1-2.32.5-1.9
One hour access (shock baseline)1.52.32.71.5-1.61.4
Social response proportion0.80.91.1-0.90.9-1.0
Social responses0.00.00.1-0.10.0-0.3
Social time0.10.20.50.1-0.10.7
Soleus weight1.03.03.51.8-1.91.4
Bone: stiffness0.10.10.30.1-0.10.5
Tibialis anterior weight0.31.11.3-1.11.0-1.1
Time to tail flick, vehicle, before self-admin3.94.04.5-2.11.9-2.0
Time to tail flick, vehicle, after self-admin0.20.20.40.4-0.20.6
Time to tail flick, test, before self-admin0.10.20.30.4-0.50.1
Time to tail flick, test, after self-admin0.10.10.10.1-0.20.4
Delta time to tail flick, vehicle, before/after SA3.33.23.61.9-1.71.7
Delta time to tail flick, test, before/after SA0.40.40.5-0.70.7-0.5
Tibia length0.30.70.80.7-0.90.9
Ambulatory time before self-admin0.00.00.0-0.00.10.0
Ambulatory time after self-admin0.81.02.10.8-0.51.5
Bone: tissue strength0.00.00.00.1-0.20.2
Total heroin consumption1.21.41.5-1.21.2-1.2
Bone: trabecular number1.11.92.01.4-1.41.3
Bone: trabecular spacing0.10.10.1-0.30.2-0.3
Bone: trabecular thickness2.43.03.41.8-1.71.6
Bone: trabecular tissue density0.20.30.6-0.30.3-0.8
Water consumed over 24 hours0.10.10.2-0.40.5-0.2
Number of responses in last shaping day0.10.10.20.5-0.40.2