Slc4a1ap

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 PL gene expression Slc4a1ap 0.02 0.02 2.4e-03 0.01 0.02 0.01 0.01 1.1e-02 6.6e-03 1.3e-02 2.1e-02
2 Adipose gene expression Slc4a1ap 0.05 0.05 1.9e-04 0.03 0.02 0.02 0.02 6.6e-04 1.8e-03 9.9e-04 1.8e-03
3 Brain gene expression Slc4a1ap 0.08 0.08 3.0e-05 0.05 0.04 0.04 0.04 2.9e-05 7.4e-05 4.6e-05 4.6e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density4.98.39.33.0-3.0-2.6
Area under the delay curve0.30.30.80.4-0.90.2
BMI with tail0.41.41.4-1.11.21.2
BMI without tail0.20.50.7-0.70.90.4
Body weight1.87.47.9-2.82.82.6
Weight adjusted by age0.10.10.2-0.10.1-0.4
Bone surface2.23.94.92.2-2.0-1.7
Bone volume2.44.15.02.2-2.1-1.7
Breakpoint value in progressive ratio session1.51.72.11.1-1.3-1.5
Number of licking bursts0.10.20.30.4-0.50.1
Context. condit. distance diff. score0.00.00.0-0.10.10.2
Locomotion velocity, session 10.10.10.1-0.20.30.2
Locomotion distance, session 11.72.12.71.6-1.6-1.1
Locomotion velocity, session 20.20.30.5-0.40.40.7
Locomotion distance, session 20.00.00.00.00.10.2
Locomotion velocity, session 30.60.71.00.8-0.7-1.0
Locomotion distance, session 30.80.91.01.0-1.0-0.8
Stereotopy head waving bouts, day 31.92.22.91.4-1.3-1.7
Stereotopy head waving duration, day 30.20.20.40.3-0.3-0.6
Locomotion velocity, session 70.80.81.01.0-0.8-0.9
Locomotion distance, session 70.00.00.00.10.10.0
Stereotopy head waving bouts, day 70.00.00.0-0.10.00.1
Stereotopy head waving duration, day 70.40.50.60.6-0.7-0.8
Locomotion velocity, session 80.10.10.20.30.0-0.4
Locomotion distance, session 80.20.30.40.7-0.6-0.2
Degree of sensitization distance1.01.01.0-1.01.01.0
Degree of sensitization stereotypy0.10.20.3-0.40.20.5
Conditioned locomotion3.33.94.02.0-2.0-1.9
Cocaine response after cond. corrected1.11.21.71.2-1.3-0.7
Cocaine response after cond. not corrected2.22.43.21.6-1.8-1.1
Cocaine response before conditioning1.11.31.51.1-1.1-1.2
Saline control response0.60.80.90.9-0.7-1.0
Bone: connectivity density4.97.88.52.9-2.9-2.5
Bone: cortical apparent density0.30.40.60.7-0.7-0.3
Bone: cortical area0.20.30.50.7-0.6-0.2
Bone: cortical porosity1.51.62.41.2-1.0-1.6
Bone: cortical porosity1.21.31.71.1-0.9-1.3
Bone: cortical thickness0.10.20.5-0.10.20.7
Bone: cortical thickness1.41.71.91.4-1.4-1.1
Bone: cortical tissue density0.20.30.40.6-0.6-0.2
Condit. Reinf. active minus inactive responses0.50.50.7-0.70.60.9
Condit. Reinf. active-inactive response ratio0.40.50.6-0.80.60.6
Condit. Reinf. active responses0.20.30.50.6-0.7-0.1
Condit. Reinf. inactive responses1.51.82.31.5-1.5-0.9
Incentive salience index mean0.00.10.10.2-0.3-0.0
Condit. Reinf. lever presses0.60.91.21.0-1.1-0.6
Condit. Reinf. active minus inactive responses4.35.35.72.2-2.3-2.4
Condit. Reinf. active-inactive response ratio1.11.21.21.1-1.1-1.1
Condit. Reinf. active responses3.65.05.82.1-2.2-2.4
Condit. Reinf. inactive responses2.02.42.71.5-1.6-1.6
Condit. Reinf. lever presses2.12.93.31.7-1.8-1.6
Condit. Reinf. lever reinforcers received3.14.45.22.0-2.0-2.3
Conditioned reinforcement - actives0.90.92.10.7-0.3-1.4
Conditioned reinforcement - inactives2.42.73.21.7-1.4-1.8
Conditioned locomotion0.50.61.2-0.10.7-1.1
Patch foraging indifference point 0 sec0.30.50.6-0.80.70.5
Patch foraging indifference point AUC1.92.22.51.6-1.4-1.4
Delay disc. indifference point, 0s delay2.62.94.8-1.51.22.2
Delay disc. indifference point, 16s delay0.60.61.40.8-1.2-0.1
Delay disc. indifference point, 2s delay0.30.30.6-0.50.30.8
Delay disc. indifference point, 24s delay2.82.75.11.6-2.3-0.7
Delay disc. indifference point, 4s delay0.00.00.10.1-0.20.2
Delay disc. indifference point, 8s delay0.30.40.80.5-0.90.0
Indifference point function ln k0.00.00.1-0.20.2-0.0
Indifference point function log k0.00.00.1-0.20.2-0.0
Patch foraging total patch changes 0 sec0.20.30.4-0.60.60.5
Patch foraging total patch changes 12 sec0.81.01.0-1.01.01.0
Patch foraging total patch changes 18 sec0.00.00.1-0.10.20.0
Patch foraging total patch changes 24 sec1.01.21.6-1.11.30.9
Patch foraging total patch changes 6 sec0.00.00.0-0.20.20.2
Patch foraging time to switch 0 sec0.00.00.10.1-0.30.0
Patch foraging water rate 0 sec0.00.00.1-0.10.3-0.1
Patch foraging water rate 12 sec1.72.62.7-1.61.61.6
Patch foraging water rate 18 sec0.71.01.0-1.01.00.9
Patch foraging water rate 24 sec1.82.52.8-1.71.51.5
Patch foraging water rate 6 sec1.42.02.1-1.41.51.4
Seeking ratio, delayed vs. immediate footshock0.20.20.5-0.30.70.0
Distance traveled before self-admin0.00.00.10.2-0.3-0.1
Distance traveled after self-admin0.60.71.0-0.80.61.0
Extensor digitorum longus weight4.517.718.54.3-4.3-4.0
Bone: elastic displacement1.01.11.21.0-1.1-1.1
Bone: elastic work1.21.51.81.2-1.3-1.1
Bone: endosteal estimation0.30.70.80.9-0.8-0.8
Bone: endosteal perimeter0.10.20.30.6-0.6-0.3
Epididymis fat weight14.533.836.0-6.06.05.5
Delta time in closed arm before/after self-admin0.00.00.0-0.20.10.1
Delta time in open arm before/after self-admin0.40.30.40.6-0.5-0.6
Diff in mean of infusions in LGA sessions0.30.30.50.5-0.3-0.7
Delay discount exponential model param0.60.71.4-0.71.20.1
Extinction: sum of active levers before priming0.60.60.80.8-0.9-0.5
Active lever presses in extinction session 60.40.41.00.4-0.2-1.0
Bone: final force0.10.10.20.4-0.3-0.2
Bone: final moment0.10.10.20.5-0.4-0.2
Food consumed during 24 hour testing period0.10.20.30.5-0.5-0.3
Glucose0.20.40.6-0.60.80.3
Heart weight10.414.716.4-3.74.13.7
Delay discount hyperbolic model param0.50.61.2-0.71.10.1
Intermittent access intake day 1-15 change0.10.10.10.20.0-0.4
Intermittent access intake escalation0.00.00.1-0.10.3-0.2
Intermittent access intake escalation 20.40.40.6-0.50.70.5
Intermitt. access day 1 inactive lever presses0.00.10.10.20.1-0.3
Intermitt. access day 15 inactive lever presses6.57.18.72.8-2.3-2.9
Intermitt. access escalation Index0.30.30.4-0.40.60.4
Intermittent access day 1 total infusions4.75.55.82.4-2.2-2.4
Intermittent access day 15 total infusions1.92.12.51.5-1.2-1.6
Intermittent access terminal intake (last 3 days)1.51.72.11.3-1.1-1.4
Intermittent access total infusions1.92.12.71.4-1.3-1.6
Intermittent access day 1 locomotion2.02.12.51.6-1.4-1.4
Intermittent access day 15 total locomotion0.50.60.80.8-0.6-0.9
Intermittent access total locomotion0.20.20.50.5-0.2-0.7
Intermittent access standard deviation0.10.10.30.30.0-0.6
Left kidney weight0.00.00.0-0.00.00.2
Right kidney weight1.02.84.1-1.61.42.0
Cocaine induced anxiety0.20.20.40.5-0.2-0.6
Post-drug Anxiety0.91.01.6-0.80.91.3
Baseline Anxiety1.21.32.2-1.00.81.5
Tail length0.10.30.4-0.60.60.3
Length with tail1.34.95.4-2.32.22.1
Length without tail0.71.51.8-1.21.11.3
Times rat made contact with spout2.12.43.11.6-1.8-1.2
Lifetime Intake2.73.04.21.7-1.5-2.0
Liver weight, left1.32.12.1-1.41.51.5
Liver weight, right9.515.716.6-3.93.94.1
Locomotor activity0.20.20.5-0.40.10.7
Locomotor testing distance0.20.30.50.5-0.7-0.4
Locomotor testing rearing0.91.52.41.0-1.0-1.6
Locomotion in novel chamber1.01.31.5-1.11.21.0
Locomotion in novel chamber post-restriction1.82.22.6-1.61.41.4
Fecal boli incidents, locomotor time 10.20.30.40.6-0.4-0.5
Change in fecal boli incidents, locomotor task4.23.94.2-2.11.92.0
Time >=10cm from walls, locomotor time 10.10.10.1-0.1-0.20.3
Bouts of movement, locomotor time 12.22.43.01.7-1.6-1.3
Total resting periods, locomotor time 12.52.73.31.8-1.6-1.5
Rest time, locomotor task time 10.10.10.20.2-0.0-0.5
Distance moved, locomotor task time 11.01.11.5-1.10.81.2
Vertical activity count, locomotor time 10.50.50.9-0.60.31.0
Time >=10cm from walls, locomotor time 20.10.10.20.2-0.1-0.4
Bouts of movement, locomotor time 20.20.20.4-0.30.40.6
Total resting periods, locomotor time 20.00.00.10.00.20.3
Rest time, locomotor task time 21.51.71.91.4-1.4-1.2
Distance moved, locomotor task time 20.91.11.3-1.11.01.0
Vertical activity count, locomotor time 20.60.60.8-0.90.90.6
Light reinforcement 14.07.28.12.8-2.8-2.4
Light reinforcement 23.24.35.32.3-2.2-1.7
Bone: marrow area0.40.80.90.9-0.9-0.8
Bone: maximum diameter0.71.41.71.3-1.3-0.9
Bone: maximum force0.00.00.00.10.00.0
Bone: maximum moment0.00.00.10.2-0.1-0.1
Mean time between licks in bursts2.43.43.6-1.91.81.9
Mean num. licks in bursts0.10.10.20.3-0.3-0.4
Cd content in liver0.00.00.10.1-0.00.3
Co content in liver5.46.36.82.6-2.6-2.3
Cu content in liver0.00.00.10.2-0.2-0.3
Fe content in liver0.10.10.1-0.20.3-0.4
K content in liver0.10.10.3-0.20.20.5
Mg content in liver0.20.20.3-0.40.40.6
Mn content in liver0.70.81.20.8-0.7-1.1
Na content in liver0.40.40.50.7-0.5-0.7
Rb content in liver0.00.00.0-0.10.10.0
Se content in liver0.40.50.7-0.70.90.3
Sr content in liver0.20.20.4-0.20.10.7
Zn content in liver1.51.61.8-1.21.21.3
Bone: minimum diameter0.10.30.4-0.40.50.7
Time in familiar zone, hab. session 10.90.81.0-0.91.00.8
Time in novel zone, hab. session 10.50.50.7-0.80.80.4
Total zone transitions, hab. session 10.10.10.20.4-0.40.0
Total locomotion distance, hab. session 10.10.10.20.4-0.3-0.2
Locomotion velocity, hab. session 10.91.21.51.2-1.2-0.8
Time in familiar zone, hab. session 20.00.00.00.00.1-0.0
Time in novel zone, hab. session 20.40.40.5-0.70.60.6
Total zone transitions, hab. session 20.10.10.20.4-0.5-0.0
Total locomotion distance, hab. session 20.20.20.30.6-0.6-0.2
Locomotion velocity, hab. session 20.40.50.70.8-0.8-0.5
Novel to familiar place preference ratio0.90.91.1-1.00.81.0
Novelty place preference1.41.51.6-1.21.11.3
Time in novel zone, NPP test1.61.71.9-1.41.21.3
Total zone transitions, NPP test1.41.92.11.5-1.5-1.2
Total locomotion distance, NPP test1.92.72.71.7-1.6-1.6
Locomotion velocity, NPP test3.24.65.02.2-2.2-1.9
Intraocular pressure4.86.68.4-2.62.22.9
Delta distance traveled before/after self-admin1.51.61.8-1.31.31.2
Delta ambulatory time before/after self-admin0.30.30.4-0.50.60.6
Parametrial fat weight6.011.813.5-3.33.33.7
Pavlov. Cond. lever latency1.62.02.3-1.51.41.3
Pavlov. Cond. magazine entry latency0.00.00.00.2-0.1-0.1
Pavlov. Cond. change in total contacts0.00.00.00.2-0.20.0
Pavlov. Cond. index score0.60.81.01.0-0.9-0.7
Pavlov. Cond. latency score0.60.70.91.0-0.9-0.7
Pavlov. Cond. lever contacts1.01.21.41.2-1.2-0.9
Pavlov. Cond. magazine entry number0.40.40.6-0.70.70.6
Pavlov. Cond. intertrial magazine entries1.31.61.81.3-1.4-1.1
Pavlov. Cond. lever-magazine prob. diff.1.51.92.11.5-1.4-1.2
Pavlov. Cond. response bias1.41.71.91.4-1.3-1.2
Pavlov. Cond. lever latency1.72.32.5-1.61.61.4
Pavlov. Cond. magazine entry latency0.20.20.30.5-0.3-0.5
Pavlov. Cond. change in total contacts0.60.81.01.0-1.0-0.7
Pavlov. Cond. index score0.91.21.41.2-1.1-1.0
Pavlov. Cond. latency score0.91.11.31.1-1.0-1.0
Pavlov. Cond. lever contacts0.91.21.51.2-1.2-0.9
Pavlov. Cond. magazine entry number0.10.10.1-0.30.20.2
Pavlov. Cond. intertrial magazine entries3.14.04.4-2.11.92.0
Pavlov. Cond. lever-magazine prob. diff.0.60.81.01.0-0.9-0.8
Pavlov. Cond. response bias1.62.22.51.6-1.6-1.3
Time in closed arm before self-admin0.50.50.7-0.80.90.5
Time in closed arm after self-admin1.31.31.6-1.31.20.8
Time in open arm before self-admin0.10.10.30.3-0.50.3
Time in open arm after self-admin2.02.12.71.6-1.6-1.0
Bone: periosteal estimation0.51.01.31.1-1.0-0.7
Bone: periosteal perimeter0.20.30.40.6-0.6-0.2
Bone: post-yield work0.40.60.80.7-0.6-0.9
Progressive ratio test 1 active lever presses1.21.22.41.0-0.6-1.6
Progressive ratio test 1 breakpoint1.01.12.10.9-0.5-1.5
Progressive ratio test 1 inactive lever presses2.93.25.81.7-1.1-2.4
Progressive ratio test 2 active lever presses0.10.10.20.00.2-0.4
Progressive ratio test 2 breakpoint0.10.10.30.10.1-0.5
Progressive ratio test 2 inactive lever presses1.61.82.91.3-0.9-1.7
Incentive Sensitization - Responses0.10.10.1-0.30.30.3
Incentive Sensitization - Breakpoint0.30.30.3-0.50.60.5
Sum of active levers in priming session hrs 5-61.00.91.41.0-1.2-0.5
Progressive ratio0.10.10.2-0.20.2-0.5
Food seeking constrained by brief footshock3.64.56.61.9-1.8-2.6
Seeking ratio, punishment vs. effort0.60.81.01.0-1.0-0.6
Retroperitoneal fat weight21.370.072.9-8.58.58.0
Reaction time number correct0.50.71.00.9-1.0-0.6
Reaction time mean minus median0.00.00.0-0.10.2-0.2
Reaction time mean minus median AUC0.00.00.1-0.30.30.1
Reaction time num false alarms0.20.20.50.4-0.70.2
Reaction time num false alarms AUC0.30.40.70.6-0.80.3
Reaction time trials correct on left0.50.71.00.9-1.0-0.6
Reaction time trials on left0.60.81.01.0-1.0-0.6
Reaction time mean1.21.71.9-1.31.21.4
Reaction time mean AUC1.01.41.5-1.21.11.2
Median of all reaction times1.31.82.4-1.31.21.5
Reaction time omissions0.10.10.10.3-0.3-0.4
Reaction time false alarm rate0.10.10.3-0.0-0.20.6
Reaction time premature initiation rate0.20.20.2-0.50.50.5
Reaction time premature initiations0.00.00.00.1-0.10.1
Std. dev. reaction times0.40.50.6-0.80.80.6
Reaction time trials completed0.60.81.01.0-1.0-0.6
Reaction time trials AUC0.71.01.31.1-1.1-0.8
Run reversals in cocaine runway, females0.00.00.1-0.2-0.00.3
Run reversals in cocaine runway, males0.30.30.50.5-0.7-0.4
Latency to leave start box in cocaine runway0.50.50.60.7-0.6-0.8
Latency to leave start box in cocaine runway, F0.60.60.70.8-0.8-0.7
Latency to leave start box in cocaine runway, M0.50.51.00.6-0.3-1.0
Std. dev. time between licks in bursts0.10.20.3-0.30.40.5
Total sessions with >9 infusions2.22.44.51.3-1.0-2.1
Short access day 1 total inactive lever presses4.14.65.12.3-1.9-2.3
Short access day 10 total inactive lever presses0.80.91.11.0-0.9-1.0
Short access day 1 total infusions4.44.67.52.0-1.6-2.7
Short access day 10 total infusions3.64.05.02.0-1.8-2.2
Short access total infusions2.52.84.61.5-1.3-2.1
Short access day 1 locomotion5.96.49.32.4-2.0-3.0
Short access day 10 total locomotion0.50.50.80.9-0.4-0.8
Short access total locomotion0.40.40.80.6-0.2-0.9
One hour access (0.3 mA shock)1.61.92.21.4-1.3-1.5
Compulsive drug intake0.30.30.7-0.4-0.00.8
One hour access (shock baseline)1.51.72.91.2-0.9-1.7
Social response proportion0.40.40.6-0.70.80.4
Social responses0.20.20.3-0.40.60.4
Social time0.91.12.1-1.01.40.5
Soleus weight4.412.915.03.7-3.9-3.1
Bone: stiffness0.00.10.1-0.20.30.3
Tibialis anterior weight3.411.812.83.6-3.6-3.1
Time to tail flick, vehicle, before self-admin2.32.42.8-1.71.71.3
Time to tail flick, vehicle, after self-admin4.14.35.3-2.22.31.7
Time to tail flick, test, before self-admin0.50.50.60.7-0.6-0.8
Time to tail flick, test, after self-admin0.10.10.1-0.30.40.2
Delta time to tail flick, vehicle, before/after SA0.00.00.1-0.20.3-0.1
Delta time to tail flick, test, before/after SA0.30.30.30.6-0.5-0.5
Tibia length2.57.17.9-2.72.82.5
Ambulatory time before self-admin0.20.20.30.4-0.5-0.0
Ambulatory time after self-admin0.50.50.9-0.70.50.9
Bone: tissue strength0.80.81.1-0.80.71.0
Total heroin consumption3.03.63.91.9-2.0-1.8
Bone: trabecular number4.06.26.82.6-2.6-2.3
Bone: trabecular spacing3.03.94.2-2.01.82.0
Bone: trabecular thickness0.60.70.80.9-0.8-0.8
Bone: trabecular tissue density0.10.20.20.4-0.3-0.5
Water consumed over 24 hours1.41.62.21.5-1.5-0.8
Number of responses in last shaping day0.40.41.10.4-0.2-1.1