Slc4a1ap

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Slc4a1ap 0.04 0.04 3.9e-04 0.01 0.02 0.02 0.01 1.0e-02 3.5e-03 5.1e-03 1.1e-02
2 PL gene expression Slc4a1ap 0.03 0.02 4.1e-04 0.01 0.01 0.01 0.01 4.6e-02 2.1e-02 3.2e-02 5.9e-02
3 pVTA gene expression Slc4a1ap 0.04 0.04 9.6e-05 0.04 0.06 0.05 0.05 1.6e-04 2.8e-05 9.0e-05 1.2e-04
4 Brain gene expression Slc4a1ap 0.09 0.08 4.7e-06 0.05 0.05 0.05 0.05 1.5e-05 3.9e-05 2.7e-05 3.4e-05

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density4.58.38.83.03.02.9-2.7
Area under the delay curve0.20.30.50.60.70.7-0.1
BMI with tail0.31.01.5-0.9-0.9-0.91.2
BMI without tail0.42.12.6-1.4-1.4-1.41.6
Body weight2.29.411.0-3.0-3.0-3.03.3
Weight adjusted by age0.00.10.30.10.00.1-0.5
Bone surface2.44.75.02.22.22.2-1.9
Bone volume2.44.75.12.32.32.2-2.0
Breakpoint value in progressive ratio session0.71.21.61.01.01.1-1.3
Number of licking bursts0.00.10.10.40.40.30.2
Context. condit. distance diff. score0.00.00.00.00.00.00.0
Locomotion velocity, session 10.00.10.1-0.2-0.2-0.20.4
Locomotion distance, session 11.72.22.61.61.61.6-1.2
Locomotion velocity, session 20.20.30.6-0.5-0.4-0.50.7
Locomotion distance, session 20.00.00.00.00.0-0.00.1
Locomotion velocity, session 30.70.71.10.80.80.8-1.1
Locomotion distance, session 30.70.80.90.90.90.9-0.8
Stereotopy head waving bouts, day 31.92.33.01.41.41.5-1.7
Stereotopy head waving duration, day 30.10.20.50.30.30.3-0.7
Locomotion velocity, session 71.01.11.31.11.01.1-1.1
Locomotion distance, session 70.00.00.00.20.10.2-0.2
Stereotopy head waving bouts, day 70.00.00.00.10.10.1-0.0
Stereotopy head waving duration, day 70.30.40.40.60.60.6-0.6
Locomotion velocity, session 80.10.10.30.30.30.3-0.5
Locomotion distance, session 80.30.40.40.70.70.6-0.5
Degree of sensitization distance0.80.91.0-0.9-0.9-0.91.0
Degree of sensitization stereotypy0.20.20.4-0.4-0.4-0.40.6
Conditioned locomotion3.13.63.81.91.91.9-1.9
Cocaine response after cond. corrected0.81.11.21.11.11.1-0.9
Cocaine response after cond. not corrected1.52.22.61.61.61.5-1.2
Cocaine response before conditioning1.01.21.41.21.21.2-0.8
Saline control response0.50.81.00.80.80.8-1.0
Bone: connectivity density4.67.37.62.82.82.7-2.5
Bone: cortical apparent density0.50.80.90.90.90.9-0.7
Bone: cortical area0.61.01.21.11.11.1-0.7
Bone: cortical porosity1.01.11.21.01.01.0-1.1
Bone: cortical porosity1.11.31.31.11.11.1-1.1
Bone: cortical thickness0.00.00.20.10.10.10.4
Bone: cortical thickness1.51.81.91.41.41.4-1.2
Bone: cortical tissue density0.30.50.60.80.80.8-0.5
Condit. Reinf. active minus inactive responses0.60.71.0-0.7-0.7-0.81.0
Condit. Reinf. active-inactive response ratio0.60.70.8-0.8-0.8-0.80.9
Condit. Reinf. active responses0.20.20.30.50.60.5-0.0
Condit. Reinf. inactive responses1.52.02.31.51.51.5-1.1
Incentive salience index mean0.00.00.10.20.20.20.1
Condit. Reinf. lever presses0.71.11.21.11.11.1-0.8
Condit. Reinf. active minus inactive responses2.94.44.62.12.22.1-1.9
Condit. Reinf. active-inactive response ratio0.61.01.11.01.01.0-0.8
Condit. Reinf. active responses2.94.14.22.12.12.0-2.0
Condit. Reinf. inactive responses1.42.12.31.41.41.4-1.5
Condit. Reinf. lever presses1.82.62.91.71.71.7-1.4
Condit. Reinf. lever reinforcers received2.63.63.71.91.91.9-1.8
Conditioned reinforcement - actives0.41.53.60.90.80.9-1.9
Conditioned reinforcement - inactives1.43.74.01.91.91.9-2.0
Conditioned locomotion0.20.30.9-0.3-0.4-0.2-1.0
Patch foraging indifference point 0 sec0.20.70.7-0.8-0.8-0.80.7
Patch foraging indifference point AUC0.71.71.81.31.31.3-1.2
Delay disc. indifference point, 0s delay2.52.84.1-1.6-1.5-1.62.0
Delay disc. indifference point, 16s delay0.20.30.40.60.70.6-0.1
Delay disc. indifference point, 2s delay0.20.20.4-0.3-0.3-0.30.6
Delay disc. indifference point, 24s delay1.32.02.71.61.61.6-0.7
Delay disc. indifference point, 4s delay0.00.00.00.10.10.10.1
Delay disc. indifference point, 8s delay0.10.20.30.50.50.5-0.1
Indifference point function ln k0.00.00.1-0.0-0.1-0.0-0.2
Indifference point function log k0.00.00.1-0.0-0.1-0.0-0.2
Patch foraging total patch changes 0 sec0.20.60.6-0.8-0.8-0.80.8
Patch foraging total patch changes 12 sec1.01.31.3-1.1-1.1-1.21.2
Patch foraging total patch changes 18 sec0.00.10.1-0.4-0.4-0.40.1
Patch foraging total patch changes 24 sec0.51.51.6-1.3-1.3-1.31.2
Patch foraging total patch changes 6 sec0.10.20.2-0.4-0.4-0.40.5
Patch foraging time to switch 0 sec0.00.00.00.00.0-0.00.2
Patch foraging water rate 0 sec0.00.00.0-0.1-0.1-0.0-0.2
Patch foraging water rate 12 sec0.52.22.3-1.5-1.5-1.51.3
Patch foraging water rate 18 sec0.41.01.0-1.0-1.0-1.00.9
Patch foraging water rate 24 sec2.02.83.1-1.7-1.7-1.71.5
Patch foraging water rate 6 sec1.31.92.0-1.4-1.4-1.41.4
Seeking ratio, delayed vs. immediate footshock0.10.20.2-0.4-0.5-0.40.2
Distance traveled before self-admin0.00.00.00.00.00.00.2
Distance traveled after self-admin1.32.22.6-1.4-1.4-1.51.6
Extensor digitorum longus weight4.517.918.34.34.34.3-4.1
Bone: elastic displacement0.81.01.80.90.90.9-1.3
Bone: elastic work1.11.51.81.21.21.2-1.3
Bone: endosteal estimation0.61.51.61.21.21.2-1.3
Bone: endosteal perimeter0.30.60.70.80.80.8-0.7
Epididymis fat weight11.156.258.0-7.6-7.6-7.67.2
Delta time in closed arm before/after self-admin0.00.00.10.10.10.1-0.3
Delta time in open arm before/after self-admin0.10.10.20.40.40.4-0.4
Diff in mean of infusions in LGA sessions0.00.00.10.10.10.1-0.4
Delay discount exponential model param0.60.71.0-1.0-1.0-1.00.4
Extinction: sum of active levers before priming0.30.50.60.70.80.7-0.5
Active lever presses in extinction session 60.40.41.00.50.40.5-1.0
Bone: final force0.10.20.20.40.40.4-0.2
Bone: final moment0.10.20.30.50.50.5-0.3
Food consumed during 24 hour testing period0.10.20.20.50.50.4-0.3
Glucose0.20.40.5-0.7-0.7-0.70.4
Heart weight3.25.26.3-2.2-2.2-2.22.5
Delay discount hyperbolic model param0.30.50.6-0.7-0.8-0.80.3
Intermittent access intake day 1-15 change0.00.00.1-0.1-0.1-0.0-0.4
Intermittent access intake escalation0.00.10.1-0.3-0.4-0.3-0.0
Intermittent access intake escalation 20.00.10.1-0.3-0.3-0.30.0
Intermitt. access day 1 inactive lever presses0.11.21.61.01.01.0-1.2
Intermitt. access day 15 inactive lever presses1.16.06.32.52.42.4-2.5
Intermitt. access escalation Index0.10.50.6-0.6-0.6-0.70.8
Intermittent access day 1 total infusions1.64.65.32.12.12.1-2.3
Intermittent access day 15 total infusions0.71.62.31.21.21.2-1.5
Intermittent access terminal intake (last 3 days)1.32.33.21.41.41.5-1.8
Intermittent access total infusions1.92.23.51.41.31.4-1.9
Intermittent access day 1 locomotion1.22.22.41.51.51.5-1.5
Intermittent access day 15 total locomotion0.00.20.40.30.30.3-0.7
Intermittent access total locomotion0.20.30.80.30.30.4-0.9
Intermittent access standard deviation0.31.31.91.11.01.1-1.4
Left kidney weight0.00.00.1-0.1-0.1-0.10.3
Right kidney weight0.21.72.7-1.1-1.1-1.21.6
Cocaine induced anxiety0.10.20.30.50.40.5-0.5
Post-drug Anxiety1.21.31.6-1.1-1.1-1.11.3
Baseline Anxiety2.13.53.8-1.9-1.8-1.91.9
Tail length0.41.92.0-1.4-1.4-1.41.3
Length with tail1.98.28.7-2.9-3.0-2.92.7
Length without tail0.42.02.1-1.4-1.5-1.41.3
Times rat made contact with spout2.22.62.71.61.71.6-1.5
Lifetime Intake2.02.54.01.41.31.4-2.0
Liver weight, left3.86.56.9-2.5-2.5-2.52.6
Liver weight, right10.418.118.3-4.3-4.2-4.34.2
Locomotor activity0.20.30.6-0.4-0.4-0.40.7
Locomotor testing distance0.10.40.40.60.60.6-0.6
Locomotor testing rearing0.31.22.40.90.91.0-1.5
Locomotion in novel chamber0.30.40.5-0.7-0.7-0.60.2
Locomotion in novel chamber post-restriction1.44.24.4-2.1-2.1-2.11.9
Fecal boli incidents, locomotor time 10.10.30.40.60.60.6-0.5
Change in fecal boli incidents, locomotor task3.94.14.2-2.0-2.1-2.11.9
Time >=10cm from walls, locomotor time 10.00.00.1-0.1-0.0-0.10.4
Bouts of movement, locomotor time 11.72.22.61.61.61.6-1.1
Total resting periods, locomotor time 12.22.52.81.71.71.7-1.3
Rest time, locomotor task time 10.00.10.1-0.3-0.3-0.30.1
Distance moved, locomotor task time 10.41.11.3-1.0-1.0-1.01.1
Vertical activity count, locomotor time 10.10.40.7-0.6-0.6-0.60.8
Time >=10cm from walls, locomotor time 20.00.10.20.40.30.4-0.4
Bouts of movement, locomotor time 20.00.10.2-0.1-0.1-0.10.5
Total resting periods, locomotor time 20.00.00.00.10.10.20.1
Rest time, locomotor task time 21.01.71.81.31.31.3-1.2
Distance moved, locomotor task time 21.11.41.5-1.2-1.2-1.21.1
Vertical activity count, locomotor time 20.30.80.9-0.9-1.0-0.90.8
Light reinforcement 11.67.17.72.82.82.7-2.4
Light reinforcement 22.04.55.02.22.22.2-1.8
Bone: marrow area0.61.51.61.21.21.2-1.3
Bone: maximum diameter1.22.32.51.61.61.6-1.4
Bone: maximum force0.10.20.30.50.50.5-0.4
Bone: maximum moment0.20.40.40.60.60.6-0.5
Mean time between licks in bursts0.63.84.0-1.9-1.9-1.92.0
Mean num. licks in bursts0.10.20.50.40.40.4-0.7
Cd content in liver0.00.00.00.10.10.1-0.2
Co content in liver6.37.47.82.82.82.8-2.5
Cu content in liver0.10.10.10.30.30.3-0.2
Fe content in liver0.70.91.40.80.80.8-1.2
K content in liver0.40.40.50.70.70.7-0.3
Mg content in liver0.40.50.60.80.80.8-0.4
Mn content in liver0.10.10.20.20.20.2-0.5
Na content in liver0.40.40.40.70.70.7-0.6
Rb content in liver0.00.00.00.10.10.1-0.0
Se content in liver0.20.20.3-0.5-0.5-0.50.2
Sr content in liver0.10.10.2-0.3-0.3-0.30.4
Zn content in liver0.80.91.1-0.9-1.0-0.91.0
Bone: minimum diameter0.00.00.1-0.2-0.2-0.20.3
Time in familiar zone, hab. session 10.60.60.7-0.8-0.8-0.80.7
Time in novel zone, hab. session 10.50.60.7-0.8-0.9-0.80.5
Total zone transitions, hab. session 10.10.20.20.40.40.4-0.3
Total locomotion distance, hab. session 10.10.20.20.40.40.4-0.4
Locomotion velocity, hab. session 11.01.41.61.31.31.2-1.0
Time in familiar zone, hab. session 20.00.00.10.00.00.0-0.3
Time in novel zone, hab. session 20.50.50.6-0.7-0.7-0.70.8
Total zone transitions, hab. session 20.10.20.20.40.50.4-0.2
Total locomotion distance, hab. session 20.20.20.30.60.60.5-0.2
Locomotion velocity, hab. session 20.40.50.70.80.80.8-0.4
Novel to familiar place preference ratio0.81.01.5-0.9-0.9-0.91.2
Novelty place preference1.31.72.1-1.2-1.2-1.21.5
Time in novel zone, NPP test1.62.02.4-1.4-1.3-1.41.5
Total zone transitions, NPP test1.42.12.31.51.51.5-1.2
Total locomotion distance, NPP test1.82.62.81.71.71.7-1.4
Locomotion velocity, NPP test3.34.75.02.22.22.2-2.0
Intraocular pressure4.47.17.7-2.6-2.6-2.62.8
Delta distance traveled before/after self-admin1.82.02.1-1.4-1.5-1.41.4
Delta ambulatory time before/after self-admin0.10.20.3-0.5-0.5-0.50.5
Parametrial fat weight11.727.532.6-5.1-5.1-5.15.7
Pavlov. Cond. lever latency1.72.22.4-1.5-1.5-1.51.3
Pavlov. Cond. magazine entry latency0.10.10.10.30.30.3-0.1
Pavlov. Cond. change in total contacts0.00.00.10.20.20.2-0.1
Pavlov. Cond. index score0.70.91.01.01.01.0-0.7
Pavlov. Cond. latency score0.70.91.01.01.01.0-0.7
Pavlov. Cond. lever contacts1.21.41.61.21.21.2-1.0
Pavlov. Cond. magazine entry number0.40.50.6-0.8-0.8-0.80.5
Pavlov. Cond. intertrial magazine entries1.31.51.61.31.31.3-1.1
Pavlov. Cond. lever-magazine prob. diff.1.41.82.01.41.41.4-1.1
Pavlov. Cond. response bias1.31.61.81.31.31.3-1.1
Pavlov. Cond. lever latency1.31.82.1-1.4-1.4-1.41.1
Pavlov. Cond. magazine entry latency0.10.20.20.40.40.4-0.4
Pavlov. Cond. change in total contacts0.41.01.11.01.01.1-0.9
Pavlov. Cond. index score0.81.31.41.21.21.2-1.0
Pavlov. Cond. latency score0.81.31.41.21.21.2-1.1
Pavlov. Cond. lever contacts0.91.31.51.21.21.2-0.9
Pavlov. Cond. magazine entry number0.10.10.2-0.4-0.4-0.40.3
Pavlov. Cond. intertrial magazine entries2.24.95.0-2.2-2.2-2.22.2
Pavlov. Cond. lever-magazine prob. diff.0.60.91.01.00.91.0-0.8
Pavlov. Cond. response bias1.52.12.31.51.51.5-1.1
Time in closed arm before self-admin0.61.11.3-1.1-1.1-1.10.8
Time in closed arm after self-admin1.21.41.7-1.3-1.3-1.30.8
Time in open arm before self-admin0.10.10.20.40.50.4-0.1
Time in open arm after self-admin1.51.71.91.41.41.3-1.0
Bone: periosteal estimation1.02.32.51.61.61.6-1.3
Bone: periosteal perimeter0.40.91.01.01.01.0-0.7
Bone: post-yield work0.71.31.61.11.11.1-1.3
Progressive ratio test 1 active lever presses0.81.52.21.11.11.1-1.5
Progressive ratio test 1 breakpoint0.91.52.21.11.11.2-1.5
Progressive ratio test 1 inactive lever presses1.33.35.11.71.61.7-2.2
Progressive ratio test 2 active lever presses0.10.20.60.20.10.2-0.7
Progressive ratio test 2 breakpoint0.10.10.40.10.00.1-0.6
Progressive ratio test 2 inactive lever presses0.41.22.40.90.91.0-1.6
Incentive Sensitization - Responses0.00.00.10.10.10.1-0.4
Incentive Sensitization - Breakpoint0.00.00.1-0.1-0.1-0.0-0.2
Sum of active levers in priming session hrs 5-60.70.70.90.91.00.9-0.3
Progressive ratio0.10.20.2-0.4-0.5-0.40.0
Food seeking constrained by brief footshock2.83.55.41.71.61.7-2.3
Seeking ratio, punishment vs. effort0.30.70.80.90.90.9-0.7
Retroperitoneal fat weight21.194.696.2-9.8-9.8-9.89.5
Reaction time number correct0.30.91.01.01.01.0-0.7
Reaction time mean minus median0.00.00.0-0.2-0.2-0.1-0.2
Reaction time mean minus median AUC0.00.10.1-0.3-0.3-0.30.1
Reaction time num false alarms0.00.10.10.30.30.20.1
Reaction time num false alarms AUC0.00.10.20.40.40.30.2
Reaction time trials correct on left0.30.91.01.01.01.0-0.7
Reaction time trials on left0.31.01.11.01.11.0-0.8
Reaction time mean0.81.91.9-1.4-1.4-1.41.4
Reaction time mean AUC0.61.51.6-1.2-1.2-1.21.3
Median of all reaction times1.32.12.4-1.4-1.4-1.41.6
Reaction time omissions0.00.10.10.30.30.3-0.2
Reaction time false alarm rate0.10.10.2-0.2-0.1-0.20.5
Reaction time premature initiation rate0.10.20.2-0.5-0.5-0.50.4
Reaction time premature initiations0.00.00.00.10.10.10.0
Std. dev. reaction times0.20.50.6-0.8-0.8-0.80.6
Reaction time trials completed0.31.01.11.01.11.0-0.8
Reaction time trials AUC0.31.21.31.11.11.1-0.8
Run reversals in cocaine runway, females0.00.00.0-0.1-0.1-0.10.2
Run reversals in cocaine runway, males0.10.10.20.40.40.4-0.3
Latency to leave start box in cocaine runway0.40.50.80.70.70.7-0.9
Latency to leave start box in cocaine runway, F0.30.30.30.60.60.6-0.5
Latency to leave start box in cocaine runway, M0.00.00.1-0.1-0.1-0.0-0.4
Std. dev. time between licks in bursts0.10.10.4-0.2-0.2-0.30.6
Total sessions with >9 infusions0.50.61.70.50.50.6-1.3
Short access day 1 total inactive lever presses4.28.48.52.92.92.9-2.9
Short access day 10 total inactive lever presses0.64.04.12.02.02.0-1.9
Short access day 1 total infusions2.03.96.81.71.61.8-2.6
Short access day 10 total infusions1.42.33.01.51.41.5-1.7
Short access total infusions0.71.02.30.80.70.8-1.5
Short access day 1 locomotion1.62.74.71.41.41.5-2.2
Short access day 10 total locomotion0.41.81.81.31.31.3-1.3
Short access total locomotion0.10.10.40.20.10.2-0.6
One hour access (0.3 mA shock)0.80.91.40.90.80.9-1.2
Compulsive drug intake0.50.71.8-0.6-0.5-0.61.3
One hour access (shock baseline)0.71.82.91.21.21.2-1.7
Social response proportion0.30.40.6-0.7-0.8-0.70.4
Social responses0.10.20.2-0.4-0.4-0.40.4
Social time0.60.91.2-1.0-1.1-1.00.6
Soleus weight4.914.615.63.94.03.9-3.5
Bone: stiffness0.00.00.00.20.20.20.2
Tibialis anterior weight3.813.013.63.73.73.7-3.3
Time to tail flick, vehicle, before self-admin1.01.31.6-1.3-1.3-1.20.7
Time to tail flick, vehicle, after self-admin2.24.45.1-2.2-2.2-2.21.7
Time to tail flick, test, before self-admin0.10.10.10.20.20.2-0.3
Time to tail flick, test, after self-admin0.10.10.10.30.30.3-0.3
Delta time to tail flick, vehicle, before/after SA0.00.00.0-0.2-0.2-0.20.1
Delta time to tail flick, test, before/after SA1.21.51.61.31.31.3-1.1
Tibia length2.87.88.0-2.8-2.8-2.82.7
Ambulatory time before self-admin0.00.00.00.20.20.20.1
Ambulatory time after self-admin0.91.52.0-1.1-1.1-1.21.4
Bone: tissue strength0.70.81.0-0.8-0.8-0.91.0
Total heroin consumption3.23.84.12.02.02.0-1.7
Bone: trabecular number3.26.06.52.52.52.5-2.2
Bone: trabecular spacing2.84.24.8-2.0-2.0-2.02.2
Bone: trabecular thickness0.71.01.21.01.01.0-1.1
Bone: trabecular tissue density0.20.30.40.60.60.6-0.5
Water consumed over 24 hours0.40.70.90.91.00.9-0.5
Number of responses in last shaping day0.10.10.5-0.0-0.10.0-0.7