Slc46a3

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Slc46a3 0.62 0.13 0.0e+00 0.36 0.35 0.36 0.36 3.4e-41 2.5e-40 2.4e-41 1.2e-41
2 Adipose mRNA stability Slc46a3 0.31 0.14 7.2e-16 0.12 0.11 0.12 0.12 2.0e-13 4.0e-12 2.7e-13 4.6e-13
3 BLA alternative TSS NM_001024968.1 0.12 0.08 9.6e-03 -0 0.03 -0 0 7.7e-01 6.2e-03 4.4e-01 2.7e-01
4 Brain mRNA stability Slc46a3 0.14 0.09 1.9e-03 0.01 0 0.01 0.01 1.6e-02 2.6e-01 1.7e-02 1.8e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density1.52.64.4-1.8-0.82.11.4
Area under the delay curve0.60.71.51.20.5-0.7-0.6
BMI with tail0.62.04.3-2.1-1.70.80.5
BMI without tail0.51.53.11.71.8-0.00.4
Body weight0.62.54.22.12.0-1.20.4
Weight adjusted by age0.60.92.6-0.5-0.6-1.60.5
Bone surface1.22.24.4-1.10.21.82.1
Bone volume1.93.44.8-2.0-0.42.12.2
Breakpoint value in progressive ratio session1.62.05.60.61.40.12.4
Number of licking bursts0.40.71.20.90.3-0.7-1.1
Context. condit. distance diff. score0.20.30.60.80.5-0.50.3
Locomotion velocity, session 11.81.93.11.70.7-1.7-1.1
Locomotion distance, session 11.21.53.90.7-0.5-1.2-2.0
Locomotion velocity, session 21.51.84.01.20.0-1.3-2.0
Locomotion distance, session 21.72.34.31.30.2-1.8-2.1
Locomotion velocity, session 30.60.72.20.70.0-1.5-0.4
Locomotion distance, session 30.40.50.91.00.7-0.6-0.4
Stereotopy head waving bouts, day 30.40.51.10.51.00.50.4
Stereotopy head waving duration, day 30.30.40.8-0.40.40.70.9
Locomotion velocity, session 70.20.30.50.60.7-0.40.3
Locomotion distance, session 70.20.30.60.60.2-0.2-0.8
Stereotopy head waving bouts, day 71.31.53.71.11.9-0.21.0
Stereotopy head waving duration, day 70.50.61.20.71.1-0.50.7
Locomotion velocity, session 81.82.15.01.70.4-2.2-0.8
Locomotion distance, session 81.21.73.01.40.3-1.7-1.3
Degree of sensitization distance0.10.10.2-0.1-0.20.1-0.5
Degree of sensitization stereotypy0.30.30.80.10.6-0.30.9
Conditioned locomotion0.40.40.90.1-0.41.0-0.8
Cocaine response after cond. corrected0.40.41.2-0.4-0.51.1-0.3
Cocaine response after cond. not corrected0.30.41.3-0.3-0.31.2-0.3
Cocaine response before conditioning0.70.81.51.21.2-0.6-0.0
Saline control response1.41.82.61.60.9-1.3-1.4
Bone: connectivity density0.71.23.2-0.50.11.81.1
Bone: cortical apparent density2.12.84.6-2.1-1.42.10.8
Bone: cortical area2.43.68.10.21.81.82.8
Bone: cortical porosity1.41.53.21.2-0.1-1.8-1.1
Bone: cortical porosity0.90.92.21.10.3-1.5-0.4
Bone: cortical thickness2.74.58.8-1.00.83.02.7
Bone: cortical thickness0.40.51.6-0.10.21.30.5
Bone: cortical tissue density2.33.14.9-2.2-1.52.10.8
Condit. Reinf. active minus inactive responses0.40.41.0-0.5-0.11.00.8
Condit. Reinf. active-inactive response ratio2.32.53.8-2.0-1.21.81.3
Condit. Reinf. active responses0.00.00.1-0.1-0.30.20.3
Condit. Reinf. inactive responses0.91.12.11.50.7-1.2-0.5
Incentive salience index mean0.30.40.50.60.70.40.7
Condit. Reinf. lever presses0.30.50.90.50.80.41.0
Condit. Reinf. active minus inactive responses0.91.12.51.60.8-0.9-0.7
Condit. Reinf. active-inactive response ratio1.11.22.71.60.7-1.2-0.6
Condit. Reinf. active responses1.82.54.72.21.1-1.6-1.2
Condit. Reinf. inactive responses0.70.91.41.21.0-1.0-0.6
Condit. Reinf. lever presses0.40.61.41.21.00.00.1
Condit. Reinf. lever reinforcers received1.52.14.32.11.2-1.5-0.8
Conditioned reinforcement - actives0.30.51.00.81.0-0.20.4
Conditioned reinforcement - inactives0.10.20.40.5-0.1-0.7-0.3
Conditioned locomotion0.60.81.30.91.1-1.00.1
Patch foraging indifference point 0 sec0.10.20.40.50.2-0.6-0.4
Patch foraging indifference point AUC0.91.32.70.7-0.3-1.7-1.4
Delay disc. indifference point, 0s delay0.10.10.30.50.1-0.2-0.4
Delay disc. indifference point, 16s delay0.60.61.10.8-0.1-1.0-0.9
Delay disc. indifference point, 2s delay0.30.40.70.80.4-0.4-0.7
Delay disc. indifference point, 24s delay0.80.93.0-0.4-0.6-1.7-0.0
Delay disc. indifference point, 4s delay0.00.00.00.1-0.20.00.1
Delay disc. indifference point, 8s delay0.70.81.81.30.5-0.1-1.1
Indifference point function ln k0.71.22.71.01.60.80.7
Indifference point function log k0.71.22.71.01.60.80.7
Patch foraging total patch changes 0 sec0.10.30.50.70.3-0.5-0.5
Patch foraging total patch changes 12 sec0.30.51.20.50.1-1.1-0.5
Patch foraging total patch changes 18 sec0.60.91.9-1.0-1.40.4-0.8
Patch foraging total patch changes 24 sec0.40.71.70.8-0.1-1.3-0.6
Patch foraging total patch changes 6 sec0.50.71.21.11.1-0.8-0.1
Patch foraging time to switch 0 sec0.61.21.6-1.2-0.81.31.1
Patch foraging water rate 0 sec0.10.30.60.80.40.0-0.6
Patch foraging water rate 12 sec0.81.83.10.41.51.21.8
Patch foraging water rate 18 sec0.71.22.01.31.4-0.80.4
Patch foraging water rate 24 sec0.50.61.7-0.10.71.30.6
Patch foraging water rate 6 sec0.60.82.10.00.51.51.0
Seeking ratio, delayed vs. immediate footshock0.60.71.20.90.6-0.7-1.1
Distance traveled before self-admin0.60.81.5-1.1-1.2-0.50.4
Distance traveled after self-admin0.20.30.8-0.40.30.10.9
Extensor digitorum longus weight0.10.20.5-0.2-0.0-0.60.7
Bone: elastic displacement1.72.05.30.0-1.4-0.7-2.3
Bone: elastic work0.81.12.10.9-0.3-1.1-1.5
Bone: endosteal estimation0.71.62.81.70.8-1.5-0.9
Bone: endosteal perimeter0.81.72.81.71.7-1.10.4
Epididymis fat weight0.20.61.4-1.2-0.80.40.1
Delta time in closed arm before/after self-admin2.22.13.81.92.0-0.90.4
Delta time in open arm before/after self-admin1.11.01.9-0.9-1.4-0.8-0.9
Diff in mean of infusions in LGA sessions1.31.65.7-0.50.30.42.4
Delay discount exponential model param0.50.51.2-1.1-0.40.60.6
Extinction: sum of active levers before priming0.30.41.3-0.2-0.4-1.10.1
Active lever presses in extinction session 60.70.71.5-1.0-0.40.31.2
Bone: final force0.40.61.11.00.9-0.40.8
Bone: final moment0.30.40.60.80.6-0.20.8
Food consumed during 24 hour testing period0.60.81.20.90.4-1.1-1.0
Glucose1.21.94.50.5-0.6-2.1-1.6
Heart weight0.71.02.01.10.3-0.8-1.4
Delay discount hyperbolic model param0.60.61.4-1.2-0.50.70.7
Intermittent access intake day 1-15 change0.20.40.9-0.8-1.00.1-0.2
Intermittent access intake escalation0.30.61.6-0.9-1.30.0-0.4
Intermittent access intake escalation 21.72.04.5-1.1-2.10.1-1.5
Intermitt. access day 1 inactive lever presses0.10.51.50.3-0.3-0.7-1.2
Intermitt. access day 15 inactive lever presses0.30.60.9-0.3-0.8-1.0-0.8
Intermitt. access escalation Index1.01.42.4-1.5-1.51.0-0.1
Intermittent access day 1 total infusions0.40.61.21.01.10.40.4
Intermittent access day 15 total infusions0.00.10.20.10.20.40.0
Intermittent access terminal intake (last 3 days)0.00.00.1-0.20.00.30.2
Intermittent access total infusions0.10.10.20.40.40.20.1
Intermittent access day 1 locomotion0.20.30.50.70.70.2-0.1
Intermittent access day 15 total locomotion0.20.40.50.70.5-0.70.4
Intermittent access total locomotion0.50.61.10.80.3-1.0-0.7
Intermittent access standard deviation0.10.10.3-0.1-0.5-0.3-0.4
Left kidney weight0.20.91.71.10.8-1.30.2
Right kidney weight0.31.32.20.91.4-0.51.5
Cocaine induced anxiety0.20.30.50.70.5-0.5-0.3
Post-drug Anxiety0.40.40.9-0.2-0.9-0.7-0.6
Baseline Anxiety0.80.92.0-0.5-1.4-0.9-0.7
Tail length3.513.828.15.34.8-1.90.1
Length with tail3.314.528.15.34.3-3.3-0.6
Length without tail0.41.23.40.90.4-1.8-0.8
Times rat made contact with spout1.11.32.51.61.5-0.4-0.5
Lifetime Intake0.20.30.50.70.60.3-0.0
Liver weight, left1.72.95.70.72.20.62.4
Liver weight, right2.34.07.42.42.7-1.31.0
Locomotor activity0.50.71.41.21.1-0.20.4
Locomotor testing distance0.10.20.5-0.0-0.60.2-0.7
Locomotor testing rearing0.40.91.2-1.1-1.01.10.0
Locomotion in novel chamber2.43.17.22.71.8-1.4-0.4
Locomotion in novel chamber post-restriction0.40.71.51.21.2-0.1-0.2
Fecal boli incidents, locomotor time 12.53.612.00.4-1.1-3.5-1.1
Change in fecal boli incidents, locomotor task0.20.20.40.20.40.60.5
Time >=10cm from walls, locomotor time 10.40.40.9-0.70.30.31.0
Bouts of movement, locomotor time 10.20.30.70.40.5-0.80.0
Total resting periods, locomotor time 10.30.31.00.30.4-1.00.3
Rest time, locomotor task time 10.60.81.50.70.2-1.2-1.0
Distance moved, locomotor task time 10.30.51.0-0.6-0.10.61.0
Vertical activity count, locomotor time 10.41.02.6-0.60.11.60.9
Time >=10cm from walls, locomotor time 20.10.10.10.20.4-0.40.1
Bouts of movement, locomotor time 20.40.71.10.61.00.61.0
Total resting periods, locomotor time 20.20.30.60.60.80.40.5
Rest time, locomotor task time 20.81.11.91.20.8-1.4-0.5
Distance moved, locomotor task time 21.61.93.1-1.8-0.51.51.5
Vertical activity count, locomotor time 22.73.75.8-2.4-1.02.21.8
Light reinforcement 11.02.55.3-0.1-1.6-2.3-1.5
Light reinforcement 21.42.14.1-1.0-2.0-1.7-0.6
Bone: marrow area0.71.62.71.60.7-1.5-1.0
Bone: maximum diameter1.01.83.30.61.61.01.8
Bone: maximum force0.71.21.71.11.3-0.11.3
Bone: maximum moment0.50.91.50.91.10.01.2
Mean time between licks in bursts0.40.93.3-0.7-0.21.80.2
Mean num. licks in bursts0.10.20.3-0.10.40.40.6
Cd content in liver0.20.20.30.50.5-0.3-0.2
Co content in liver1.31.52.4-0.1-1.2-1.4-1.5
Cu content in liver0.70.92.0-1.4-1.0-0.50.3
Fe content in liver3.74.47.5-2.7-0.92.22.2
K content in liver0.20.20.50.50.2-0.7-0.1
Mg content in liver0.50.51.3-0.0-0.4-1.2-0.6
Mn content in liver0.30.30.60.1-0.5-0.7-0.8
Na content in liver0.91.02.11.00.4-1.4-0.9
Rb content in liver1.92.23.6-1.9-1.01.90.7
Se content in liver0.60.71.7-1.3-1.00.4-0.2
Sr content in liver0.70.61.70.71.3-0.20.2
Zn content in liver0.40.41.50.30.2-1.2-0.3
Bone: minimum diameter0.61.12.21.31.50.30.7
Time in familiar zone, hab. session 10.10.10.2-0.2-0.20.50.2
Time in novel zone, hab. session 10.80.82.1-0.60.50.81.4
Total zone transitions, hab. session 12.33.16.42.42.5-0.40.5
Total locomotion distance, hab. session 10.30.41.00.61.00.5-0.0
Locomotion velocity, hab. session 10.30.40.60.70.6-0.4-0.7
Time in familiar zone, hab. session 20.30.30.6-0.7-0.8-0.2-0.2
Time in novel zone, hab. session 20.50.60.90.51.00.80.7
Total zone transitions, hab. session 20.60.82.30.4-0.4-0.8-1.5
Total locomotion distance, hab. session 20.70.92.5-0.1-0.8-0.8-1.6
Locomotion velocity, hab. session 20.91.33.4-0.1-0.9-0.9-1.9
Novel to familiar place preference ratio0.10.10.2-0.3-0.2-0.0-0.4
Novelty place preference0.10.10.1-0.4-0.20.1-0.2
Time in novel zone, NPP test0.00.00.0-0.20.10.1-0.0
Total zone transitions, NPP test1.01.42.11.41.0-1.4-0.7
Total locomotion distance, NPP test0.71.01.21.10.8-1.0-1.1
Locomotion velocity, NPP test0.60.91.21.00.7-0.9-1.1
Intraocular pressure1.62.34.6-2.2-1.00.81.7
Delta distance traveled before/after self-admin0.70.71.80.41.30.80.6
Delta ambulatory time before/after self-admin0.60.81.60.11.31.00.6
Parametrial fat weight0.20.50.90.10.90.30.9
Pavlov. Cond. lever latency0.30.40.8-0.9-0.40.70.0
Pavlov. Cond. magazine entry latency2.12.75.32.32.3-0.20.4
Pavlov. Cond. change in total contacts1.21.32.41.51.5-0.70.4
Pavlov. Cond. index score1.31.63.41.81.6-0.60.2
Pavlov. Cond. latency score1.01.32.91.71.3-0.8-0.1
Pavlov. Cond. lever contacts0.60.71.61.31.1-0.40.3
Pavlov. Cond. magazine entry number2.22.85.7-2.4-2.30.2-0.4
Pavlov. Cond. intertrial magazine entries0.50.61.4-0.9-1.20.0-0.5
Pavlov. Cond. lever-magazine prob. diff.1.11.42.81.71.5-0.50.3
Pavlov. Cond. response bias1.92.34.42.12.1-0.30.5
Pavlov. Cond. lever latency0.40.50.9-0.9-0.30.50.9
Pavlov. Cond. magazine entry latency0.70.92.1-0.20.51.41.1
Pavlov. Cond. change in total contacts0.30.51.00.51.00.50.6
Pavlov. Cond. index score0.30.30.70.70.80.30.3
Pavlov. Cond. latency score0.20.30.60.70.80.20.2
Pavlov. Cond. lever contacts0.20.30.70.60.1-0.4-0.9
Pavlov. Cond. magazine entry number0.60.71.40.1-0.5-1.0-1.2
Pavlov. Cond. intertrial magazine entries1.72.64.11.60.5-2.0-1.8
Pavlov. Cond. lever-magazine prob. diff.0.20.30.50.70.70.10.3
Pavlov. Cond. response bias0.10.10.20.40.50.40.1
Time in closed arm before self-admin0.40.51.0-0.9-0.51.0-0.0
Time in closed arm after self-admin1.51.63.81.12.00.21.2
Time in open arm before self-admin0.00.00.1-0.0-0.2-0.20.0
Time in open arm after self-admin1.21.42.7-1.4-1.7-0.90.3
Bone: periosteal estimation0.61.32.51.11.60.31.2
Bone: periosteal perimeter0.61.01.91.21.4-0.30.7
Bone: post-yield work0.91.33.5-1.1-0.30.81.9
Progressive ratio test 1 active lever presses1.61.93.41.01.80.91.6
Progressive ratio test 1 breakpoint1.51.93.31.01.80.91.5
Progressive ratio test 1 inactive lever presses0.40.51.00.51.00.60.6
Progressive ratio test 2 active lever presses0.30.30.70.60.50.80.0
Progressive ratio test 2 breakpoint0.30.30.60.60.50.8-0.1
Progressive ratio test 2 inactive lever presses0.61.01.81.41.20.5-0.7
Incentive Sensitization - Responses0.20.20.50.4-0.20.4-0.7
Incentive Sensitization - Breakpoint0.20.30.70.3-0.30.4-0.9
Sum of active levers in priming session hrs 5-60.20.20.30.40.20.50.4
Progressive ratio1.11.73.11.81.4-1.4-0.2
Food seeking constrained by brief footshock0.20.20.5-0.5-0.70.30.1
Seeking ratio, punishment vs. effort1.01.42.9-1.3-0.91.70.4
Retroperitoneal fat weight0.10.50.9-0.50.40.71.0
Reaction time number correct0.10.10.30.50.6-0.10.1
Reaction time mean minus median0.61.52.91.11.70.71.0
Reaction time mean minus median AUC0.61.42.81.01.70.71.1
Reaction time num false alarms1.11.62.61.60.5-1.1-1.5
Reaction time num false alarms AUC0.81.32.11.40.4-1.0-1.4
Reaction time trials correct on left0.10.10.30.50.6-0.10.1
Reaction time trials on left0.10.20.40.50.6-0.10.0
Reaction time mean0.61.02.8-0.9-0.31.70.6
Reaction time mean AUC0.81.33.9-0.9-0.32.00.5
Median of all reaction times1.31.83.5-1.6-1.11.90.4
Reaction time omissions0.20.31.1-0.00.01.00.4
Reaction time false alarm rate0.60.81.21.00.2-0.9-1.1
Reaction time premature initiation rate1.72.34.21.90.6-2.0-1.1
Reaction time premature initiations1.32.34.32.11.0-1.7-1.0
Std. dev. reaction times0.61.21.70.41.21.31.2
Reaction time trials completed0.10.20.40.50.6-0.10.0
Reaction time trials AUC0.10.10.30.30.5-0.00.2
Run reversals in cocaine runway, females1.81.84.90.2-1.11.0-2.2
Run reversals in cocaine runway, males0.20.20.3-0.5-0.00.50.5
Latency to leave start box in cocaine runway0.70.82.0-0.3-1.0-0.4-1.4
Latency to leave start box in cocaine runway, F0.60.71.6-0.4-1.10.0-1.3
Latency to leave start box in cocaine runway, M0.20.20.40.0-0.0-0.7-0.6
Std. dev. time between licks in bursts2.02.86.50.9-0.5-1.9-2.6
Total sessions with >9 infusions0.40.51.00.40.80.51.0
Short access day 1 total inactive lever presses2.02.64.62.11.1-1.4-1.6
Short access day 10 total inactive lever presses0.82.05.61.20.4-0.8-2.4
Short access day 1 total infusions0.20.30.90.20.30.90.2
Short access day 10 total infusions0.70.91.91.31.4-0.00.1
Short access total infusions0.20.30.50.60.70.60.1
Short access day 1 locomotion0.10.10.20.20.4-0.30.4
Short access day 10 total locomotion0.91.62.61.61.6-0.3-1.0
Short access total locomotion0.91.12.61.21.6-0.20.6
One hour access (0.3 mA shock)0.50.51.11.10.2-0.8-0.6
Compulsive drug intake0.60.71.6-1.1-1.3-0.10.3
One hour access (shock baseline)1.11.63.41.91.7-0.0-0.3
Social response proportion0.40.51.00.91.00.2-0.2
Social responses2.43.16.12.52.4-0.7-0.1
Social time0.40.61.7-0.50.30.61.3
Soleus weight0.51.52.30.21.41.51.3
Bone: stiffness1.62.54.51.92.1-0.71.2
Tibialis anterior weight0.00.10.10.10.30.10.3
Time to tail flick, vehicle, before self-admin0.60.60.9-0.8-0.9-1.00.0
Time to tail flick, vehicle, after self-admin1.01.34.60.5-0.1-2.1-0.5
Time to tail flick, test, before self-admin0.60.60.80.90.9-0.80.4
Time to tail flick, test, after self-admin1.51.62.2-0.3-1.4-1.5-1.4
Delta time to tail flick, vehicle, before/after SA0.40.40.9-0.3-0.7-0.9-0.1
Delta time to tail flick, test, before/after SA0.90.91.9-0.7-1.1-0.2-1.4
Tibia length0.41.22.61.31.6-0.10.6
Ambulatory time before self-admin0.50.81.1-1.1-1.0-0.60.8
Ambulatory time after self-admin0.20.20.4-0.40.3-0.10.7
Bone: tissue strength1.11.22.0-0.80.31.41.4
Total heroin consumption0.40.51.6-0.5-0.0-0.31.3
Bone: trabecular number1.11.94.6-0.90.22.11.5
Bone: trabecular spacing0.60.81.40.0-0.7-1.1-1.2
Bone: trabecular thickness1.11.42.5-1.4-0.31.61.1
Bone: trabecular tissue density1.31.93.71.90.9-1.6-0.8
Water consumed over 24 hours1.21.73.31.81.3-0.6-1.1
Number of responses in last shaping day0.20.30.5-0.40.10.70.6