Slc26a6

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Adipose gene expression Slc26a6 0.02 0.01 6.9e-03 0.01 0 0 0 4.4e-02 1.4e-01 1.3e-01 2.3e-01
2 RMTg intron excision ratio chr8_109566450_109568060 0.19 0.12 2.7e-03 0.04 -0.01 -0.01 0.01 2.5e-02 6.7e-01 9.1e-01 1.4e-01
3 IL intron excision ratio chr8_109564676_109564848 0.23 0.14 6.4e-03 0.05 0.01 0.01 0.02 2.4e-02 1.5e-01 2.1e-01 1.2e-01
4 IL intron excision ratio chr8_109564723_109564848 0.22 0.14 8.8e-03 0.05 0.01 0 0.01 2.8e-02 1.8e-01 3.0e-01 1.4e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.50.91.80.00.01.3-1.3
Area under the delay curve0.91.01.4-1.2-1.20.8-0.8
BMI with tail0.20.60.70.80.80.7-0.7
BMI without tail1.12.33.21.81.81.2-1.2
Body weight2.510.420.34.54.50.6-0.6
Weight adjusted by age0.60.71.20.40.4-1.11.1
Bone surface0.10.20.2-0.5-0.50.5-0.5
Bone volume0.20.30.6-0.3-0.30.8-0.8
Breakpoint value in progressive ratio session0.40.40.40.60.60.7-0.7
Number of licking bursts1.51.83.4-0.4-0.4-1.81.8
Context. condit. distance diff. score0.00.10.10.10.1-0.30.3
Locomotion velocity, session 10.20.20.3-0.3-0.30.5-0.5
Locomotion distance, session 11.31.72.70.80.81.6-1.6
Locomotion velocity, session 20.20.30.5-0.7-0.7-0.10.1
Locomotion distance, session 20.71.01.9-0.4-0.41.4-1.4
Locomotion velocity, session 31.21.42.9-0.0-0.01.7-1.7
Locomotion distance, session 31.41.51.9-1.4-1.41.1-1.1
Stereotopy head waving bouts, day 31.41.63.10.30.3-1.81.8
Stereotopy head waving duration, day 30.60.71.10.70.7-1.01.0
Locomotion velocity, session 70.80.91.80.10.11.3-1.3
Locomotion distance, session 70.91.11.6-1.3-1.30.8-0.8
Stereotopy head waving bouts, day 70.10.10.10.00.00.4-0.4
Stereotopy head waving duration, day 70.30.40.50.70.70.6-0.6
Locomotion velocity, session 80.91.12.10.20.21.4-1.4
Locomotion distance, session 81.72.54.90.30.32.2-2.2
Degree of sensitization distance0.70.71.51.21.2-0.10.1
Degree of sensitization stereotypy0.50.61.10.30.31.0-1.0
Conditioned locomotion1.11.32.5-1.6-1.60.2-0.2
Cocaine response after cond. corrected1.41.62.70.70.7-1.61.6
Cocaine response after cond. not corrected1.41.52.21.51.5-0.90.9
Cocaine response before conditioning1.31.62.40.90.91.5-1.5
Saline control response2.02.63.01.51.51.7-1.7
Bone: connectivity density0.71.12.0-0.5-0.51.4-1.4
Bone: cortical apparent density0.10.10.2-0.4-0.40.2-0.2
Bone: cortical area1.52.24.0-0.6-0.6-2.02.0
Bone: cortical porosity0.60.71.4-0.1-0.11.2-1.2
Bone: cortical porosity0.70.81.4-0.3-0.31.2-1.2
Bone: cortical thickness1.52.44.80.20.2-2.22.2
Bone: cortical thickness0.10.10.20.00.0-0.40.4
Bone: cortical tissue density0.10.10.2-0.4-0.40.3-0.3
Condit. Reinf. active minus inactive responses0.50.61.10.00.0-1.11.1
Condit. Reinf. active-inactive response ratio1.01.12.10.30.3-1.51.5
Condit. Reinf. active responses0.30.40.8-0.1-0.1-0.90.9
Condit. Reinf. inactive responses0.10.10.3-0.5-0.50.1-0.1
Incentive salience index mean0.20.30.4-0.3-0.3-0.70.7
Condit. Reinf. lever presses0.60.81.6-1.3-1.3-0.30.3
Condit. Reinf. active minus inactive responses0.60.81.51.21.20.3-0.3
Condit. Reinf. active-inactive response ratio0.50.51.01.01.0-0.00.0
Condit. Reinf. active responses0.60.81.61.31.30.2-0.2
Condit. Reinf. inactive responses0.00.00.0-0.1-0.1-0.00.0
Condit. Reinf. lever presses0.71.01.81.31.30.4-0.4
Condit. Reinf. lever reinforcers received0.71.01.91.41.40.2-0.2
Conditioned reinforcement - actives0.10.10.1-0.3-0.3-0.20.2
Conditioned reinforcement - inactives3.03.45.7-1.0-1.0-2.42.4
Conditioned locomotion0.30.40.7-0.3-0.30.8-0.8
Patch foraging indifference point 0 sec1.32.02.11.41.41.5-1.5
Patch foraging indifference point AUC1.01.22.20.40.41.5-1.5
Delay disc. indifference point, 0s delay0.10.10.10.20.20.3-0.3
Delay disc. indifference point, 16s delay0.50.50.7-0.8-0.80.5-0.5
Delay disc. indifference point, 2s delay0.10.10.2-0.5-0.50.3-0.3
Delay disc. indifference point, 24s delay0.60.60.9-1.0-1.00.5-0.5
Delay disc. indifference point, 4s delay0.50.61.1-1.1-1.10.0-0.0
Delay disc. indifference point, 8s delay1.21.21.9-1.4-1.40.7-0.7
Indifference point function ln k0.40.51.0-1.0-1.00.1-0.1
Indifference point function log k0.40.51.0-1.0-1.00.1-0.1
Patch foraging total patch changes 0 sec1.11.72.31.51.51.0-1.0
Patch foraging total patch changes 12 sec0.70.91.41.21.20.6-0.6
Patch foraging total patch changes 18 sec1.72.12.91.71.71.2-1.2
Patch foraging total patch changes 24 sec1.31.63.01.71.70.5-0.5
Patch foraging total patch changes 6 sec1.01.62.70.60.61.6-1.6
Patch foraging time to switch 0 sec0.81.22.2-0.4-0.4-1.51.5
Patch foraging water rate 0 sec0.10.10.30.50.50.0-0.0
Patch foraging water rate 12 sec0.10.10.10.40.40.2-0.2
Patch foraging water rate 18 sec0.10.20.40.10.1-0.60.6
Patch foraging water rate 24 sec0.40.51.11.01.0-0.10.1
Patch foraging water rate 6 sec0.30.40.40.60.60.7-0.7
Seeking ratio, delayed vs. immediate footshock1.11.32.2-1.5-1.50.6-0.6
Distance traveled before self-admin1.11.21.4-0.9-0.9-1.21.2
Distance traveled after self-admin1.11.21.9-1.4-1.4-0.70.7
Extensor digitorum longus weight0.31.01.4-0.8-0.8-1.21.2
Bone: elastic displacement0.50.61.10.10.1-1.01.0
Bone: elastic work0.30.30.40.50.5-0.70.7
Bone: endosteal estimation0.10.30.60.20.20.8-0.8
Bone: endosteal perimeter0.61.32.6-1.6-1.6-0.00.0
Epididymis fat weight0.00.10.10.30.30.0-0.0
Delta time in closed arm before/after self-admin0.10.10.1-0.0-0.00.3-0.3
Delta time in open arm before/after self-admin0.10.10.20.10.10.4-0.4
Diff in mean of infusions in LGA sessions1.61.83.20.60.6-1.81.8
Delay discount exponential model param1.01.01.81.31.3-0.60.6
Extinction: sum of active levers before priming0.40.40.80.10.10.9-0.9
Active lever presses in extinction session 61.00.91.90.10.11.4-1.4
Bone: final force0.60.91.01.01.0-1.01.0
Bone: final moment0.81.21.31.11.1-1.11.1
Food consumed during 24 hour testing period0.60.71.31.21.20.1-0.1
Glucose0.81.22.10.60.61.5-1.5
Heart weight1.82.53.51.91.9-1.21.2
Delay discount hyperbolic model param1.01.01.71.31.3-0.60.6
Intermittent access intake day 1-15 change3.02.94.3-1.3-1.3-2.12.1
Intermittent access intake escalation2.52.53.3-1.3-1.3-1.81.8
Intermittent access intake escalation 22.32.33.7-0.9-0.9-1.91.9
Intermitt. access day 1 inactive lever presses0.00.00.10.10.1-0.30.3
Intermitt. access day 15 inactive lever presses1.61.82.6-1.0-1.0-1.61.6
Intermitt. access escalation Index0.50.50.90.10.11.0-1.0
Intermittent access day 1 total infusions0.00.00.00.10.10.0-0.0
Intermittent access day 15 total infusions0.91.01.1-0.9-0.9-1.11.1
Intermittent access terminal intake (last 3 days)0.40.50.5-0.7-0.7-0.70.7
Intermittent access total infusions0.50.50.6-0.8-0.8-0.60.6
Intermittent access day 1 locomotion0.00.00.0-0.1-0.10.2-0.2
Intermittent access day 15 total locomotion0.80.81.4-1.2-1.20.5-0.5
Intermittent access total locomotion0.81.01.6-1.3-1.30.6-0.6
Intermittent access standard deviation2.72.95.4-0.6-0.6-2.32.3
Left kidney weight1.43.96.21.31.32.5-2.5
Right kidney weight1.13.05.80.50.52.4-2.4
Cocaine induced anxiety0.40.50.90.10.1-1.01.0
Post-drug Anxiety0.20.20.30.30.3-0.60.6
Baseline Anxiety0.50.51.1-1.0-1.00.1-0.1
Tail length3.510.720.34.54.51.0-1.0
Length with tail4.115.229.75.55.50.8-0.8
Length without tail2.45.210.43.23.2-0.00.0
Times rat made contact with spout0.40.50.80.90.9-0.40.4
Lifetime Intake0.30.30.6-0.8-0.8-0.30.3
Liver weight, left0.50.81.30.60.61.1-1.1
Liver weight, right1.72.83.01.61.61.7-1.7
Locomotor activity3.15.09.33.13.10.8-0.8
Locomotor testing distance2.74.47.82.82.81.0-1.0
Locomotor testing rearing0.10.10.20.50.5-0.30.3
Locomotion in novel chamber0.40.50.7-0.5-0.5-0.80.8
Locomotion in novel chamber post-restriction0.60.71.00.60.61.0-1.0
Fecal boli incidents, locomotor time 10.40.50.91.01.0-0.20.2
Change in fecal boli incidents, locomotor task0.10.10.2-0.0-0.00.5-0.5
Time >=10cm from walls, locomotor time 10.70.70.8-0.9-0.90.8-0.8
Bouts of movement, locomotor time 10.10.10.20.50.5-0.10.1
Total resting periods, locomotor time 10.10.10.10.40.4-0.10.1
Rest time, locomotor task time 10.10.10.2-0.5-0.50.2-0.2
Distance moved, locomotor task time 10.60.60.91.01.0-0.50.5
Vertical activity count, locomotor time 10.40.40.80.90.9-0.00.0
Time >=10cm from walls, locomotor time 20.60.61.11.01.00.4-0.4
Bouts of movement, locomotor time 20.30.40.6-0.3-0.3-0.80.8
Total resting periods, locomotor time 20.30.40.5-0.5-0.5-0.70.7
Rest time, locomotor task time 20.10.10.20.40.40.4-0.4
Distance moved, locomotor task time 20.20.20.20.40.4-0.50.5
Vertical activity count, locomotor time 20.00.00.0-0.2-0.2-0.10.1
Light reinforcement 10.40.71.31.11.10.5-0.5
Light reinforcement 20.91.12.1-0.4-0.41.5-1.5
Bone: marrow area0.20.40.70.30.30.8-0.8
Bone: maximum diameter0.81.52.3-0.8-0.8-1.51.5
Bone: maximum force0.30.50.80.90.9-0.50.5
Bone: maximum moment0.40.60.91.01.0-0.60.6
Mean time between licks in bursts0.81.22.2-1.5-1.5-0.40.4
Mean num. licks in bursts1.72.03.11.01.01.8-1.8
Cd content in liver2.02.23.21.81.8-1.11.1
Co content in liver0.50.61.1-0.3-0.3-1.01.0
Cu content in liver3.03.66.22.52.51.0-1.0
Fe content in liver1.72.13.01.71.7-1.11.1
K content in liver1.31.31.41.11.11.2-1.2
Mg content in liver0.50.50.90.10.11.0-1.0
Mn content in liver1.41.62.90.50.51.7-1.7
Na content in liver0.40.40.70.80.80.4-0.4
Rb content in liver1.82.22.81.31.3-1.71.7
Se content in liver0.10.20.20.40.40.4-0.4
Sr content in liver0.40.30.7-0.1-0.10.8-0.8
Zn content in liver3.13.45.62.42.41.1-1.1
Bone: minimum diameter0.40.71.1-1.1-1.1-0.50.5
Time in familiar zone, hab. session 11.61.52.3-0.9-0.9-1.51.5
Time in novel zone, hab. session 10.30.30.30.60.60.5-0.5
Total zone transitions, hab. session 11.21.73.20.50.51.8-1.8
Total locomotion distance, hab. session 10.40.61.00.60.61.0-1.0
Locomotion velocity, hab. session 10.71.01.60.60.61.3-1.3
Time in familiar zone, hab. session 21.21.32.1-0.7-0.7-1.41.4
Time in novel zone, hab. session 20.30.30.50.00.00.7-0.7
Total zone transitions, hab. session 20.40.51.0-0.1-0.11.0-1.0
Total locomotion distance, hab. session 20.70.91.20.70.71.1-1.1
Locomotion velocity, hab. session 20.71.01.50.60.61.2-1.2
Novel to familiar place preference ratio3.63.76.70.80.82.6-2.6
Novelty place preference3.94.07.30.80.82.7-2.7
Time in novel zone, NPP test3.33.45.90.90.92.4-2.4
Total zone transitions, NPP test3.44.97.81.41.42.8-2.8
Total locomotion distance, NPP test1.01.41.41.21.21.2-1.2
Locomotion velocity, NPP test1.41.92.41.21.21.5-1.5
Intraocular pressure1.01.42.81.71.70.3-0.3
Delta distance traveled before/after self-admin0.20.20.3-0.3-0.30.5-0.5
Delta ambulatory time before/after self-admin0.40.50.60.60.60.8-0.8
Parametrial fat weight0.81.62.11.41.41.1-1.1
Pavlov. Cond. lever latency2.73.46.32.52.50.8-0.8
Pavlov. Cond. magazine entry latency4.25.58.1-2.8-2.8-1.71.7
Pavlov. Cond. change in total contacts1.51.71.7-1.3-1.3-1.31.3
Pavlov. Cond. index score4.15.27.6-2.8-2.8-1.71.7
Pavlov. Cond. latency score3.84.87.8-2.8-2.8-1.31.3
Pavlov. Cond. lever contacts1.51.73.1-1.8-1.8-0.60.6
Pavlov. Cond. magazine entry number4.55.68.42.92.91.7-1.7
Pavlov. Cond. intertrial magazine entries0.20.20.30.60.60.4-0.4
Pavlov. Cond. lever-magazine prob. diff.4.25.26.6-2.6-2.6-2.02.0
Pavlov. Cond. response bias4.65.67.8-2.8-2.8-1.81.8
Pavlov. Cond. lever latency0.10.10.1-0.4-0.4-0.30.3
Pavlov. Cond. magazine entry latency0.10.10.3-0.5-0.5-0.10.1
Pavlov. Cond. change in total contacts0.81.12.11.51.50.1-0.1
Pavlov. Cond. index score0.00.00.00.00.0-0.10.1
Pavlov. Cond. latency score0.00.00.0-0.0-0.0-0.10.1
Pavlov. Cond. lever contacts0.40.60.70.80.80.7-0.7
Pavlov. Cond. magazine entry number0.30.30.60.80.80.3-0.3
Pavlov. Cond. intertrial magazine entries0.40.50.5-0.7-0.7-0.70.7
Pavlov. Cond. lever-magazine prob. diff.0.00.00.0-0.0-0.0-0.10.1
Pavlov. Cond. response bias0.00.00.0-0.1-0.10.1-0.1
Time in closed arm before self-admin0.20.20.40.70.7-0.00.0
Time in closed arm after self-admin0.10.10.10.20.2-0.30.3
Time in open arm before self-admin0.30.30.6-0.8-0.8-0.30.3
Time in open arm after self-admin1.41.52.5-0.7-0.71.6-1.6
Bone: periosteal estimation0.10.10.2-0.1-0.1-0.40.4
Bone: periosteal perimeter0.91.62.3-1.5-1.5-0.90.9
Bone: post-yield work0.10.10.20.10.10.4-0.4
Progressive ratio test 1 active lever presses0.40.40.7-0.1-0.10.9-0.9
Progressive ratio test 1 breakpoint0.40.40.7-0.1-0.10.9-0.9
Progressive ratio test 1 inactive lever presses0.70.71.2-0.5-0.5-1.11.1
Progressive ratio test 2 active lever presses0.50.61.0-1.0-1.0-0.40.4
Progressive ratio test 2 breakpoint0.40.50.7-0.8-0.8-0.50.5
Progressive ratio test 2 inactive lever presses3.33.85.4-1.4-1.4-2.32.3
Incentive Sensitization - Responses1.21.31.3-1.2-1.2-1.11.1
Incentive Sensitization - Breakpoint1.21.31.3-1.2-1.2-1.11.1
Sum of active levers in priming session hrs 5-60.30.30.50.40.40.7-0.7
Progressive ratio2.02.33.41.81.81.1-1.1
Food seeking constrained by brief footshock1.01.22.2-1.5-1.5-0.40.4
Seeking ratio, punishment vs. effort3.74.66.9-2.6-2.6-1.51.5
Retroperitoneal fat weight0.31.01.20.90.91.1-1.1
Reaction time number correct0.60.91.2-1.1-1.1-0.80.8
Reaction time mean minus median0.30.40.50.50.50.7-0.7
Reaction time mean minus median AUC0.60.70.80.90.90.8-0.8
Reaction time num false alarms0.20.30.5-0.7-0.7-0.20.2
Reaction time num false alarms AUC0.10.10.1-0.4-0.40.2-0.2
Reaction time trials correct on left0.60.91.2-1.1-1.1-0.80.8
Reaction time trials on left0.70.91.3-1.1-1.1-0.80.8
Reaction time mean0.10.10.1-0.2-0.20.4-0.4
Reaction time mean AUC0.10.20.4-0.2-0.20.6-0.6
Median of all reaction times0.10.10.2-0.5-0.50.2-0.2
Reaction time omissions0.30.40.4-0.6-0.6-0.60.6
Reaction time false alarm rate0.00.00.00.00.00.2-0.2
Reaction time premature initiation rate0.81.11.71.31.30.7-0.7
Reaction time premature initiations0.10.20.30.60.60.2-0.2
Std. dev. reaction times0.40.50.90.30.31.0-1.0
Reaction time trials completed0.70.91.3-1.1-1.1-0.80.8
Reaction time trials AUC0.81.11.6-1.3-1.3-0.80.8
Run reversals in cocaine runway, females1.81.72.5-1.6-1.6-1.01.0
Run reversals in cocaine runway, males0.60.60.70.70.7-0.80.8
Latency to leave start box in cocaine runway0.60.71.31.11.1-0.00.0
Latency to leave start box in cocaine runway, F1.41.52.01.41.4-1.01.0
Latency to leave start box in cocaine runway, M0.60.61.2-0.1-0.11.1-1.1
Std. dev. time between licks in bursts4.75.66.0-2.4-2.4-2.32.3
Total sessions with >9 infusions1.01.02.0-0.2-0.2-1.41.4
Short access day 1 total inactive lever presses2.83.24.5-2.1-2.1-1.41.4
Short access day 10 total inactive lever presses1.92.14.20.20.2-2.12.1
Short access day 1 total infusions0.50.50.6-0.6-0.6-0.70.7
Short access day 10 total infusions0.10.20.3-0.6-0.60.1-0.1
Short access total infusions0.40.50.9-1.0-1.00.1-0.1
Short access day 1 locomotion0.10.10.1-0.1-0.1-0.30.3
Short access day 10 total locomotion0.40.40.8-0.1-0.10.9-0.9
Short access total locomotion0.50.51.00.20.21.0-1.0
One hour access (0.3 mA shock)0.30.40.5-0.7-0.70.5-0.5
Compulsive drug intake1.01.01.9-0.1-0.11.4-1.4
One hour access (shock baseline)0.30.40.6-0.4-0.4-0.80.8
Social response proportion0.10.10.20.40.4-0.20.2
Social responses0.40.50.70.80.80.5-0.5
Social time1.21.62.6-0.8-0.8-1.61.6
Soleus weight1.85.210.03.23.20.6-0.6
Bone: stiffness0.00.10.10.30.3-0.10.1
Tibialis anterior weight0.10.20.4-0.1-0.1-0.60.6
Time to tail flick, vehicle, before self-admin1.21.32.41.61.60.3-0.3
Time to tail flick, vehicle, after self-admin0.91.01.30.80.8-1.11.1
Time to tail flick, test, before self-admin1.41.32.50.40.41.6-1.6
Time to tail flick, test, after self-admin0.30.30.6-0.2-0.2-0.70.7
Delta time to tail flick, vehicle, before/after SA1.31.31.9-0.8-0.8-1.41.4
Delta time to tail flick, test, before/after SA0.80.71.0-0.6-0.6-1.01.0
Tibia length3.49.716.14.04.01.8-1.8
Ambulatory time before self-admin1.31.41.4-1.2-1.2-1.21.2
Ambulatory time after self-admin0.70.81.5-1.2-1.20.2-0.2
Bone: tissue strength1.51.42.21.51.5-0.80.8
Total heroin consumption0.60.71.01.01.0-0.60.6
Bone: trabecular number1.21.82.3-1.1-1.11.5-1.5
Bone: trabecular spacing1.52.02.01.41.4-1.41.4
Bone: trabecular thickness1.11.32.60.10.11.6-1.6
Bone: trabecular tissue density0.30.40.50.70.70.6-0.6
Water consumed over 24 hours0.60.81.50.00.0-1.21.2
Number of responses in last shaping day0.80.81.3-0.6-0.6-1.11.1