Slc22a6

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 OFC isoform ratio XM_006230978.4 0.13 0.09 7.5e-03 0.07 0.03 -0.01 0.05 8.5e-03 6.4e-02 7.1e-01 2.4e-02
2 PL mRNA stability Slc22a6 0.04 0.02 1.4e-04 0.04 0.03 0.03 0.04 6.4e-05 1.3e-04 1.1e-04 1.0e-04
3 Brain mRNA stability Slc22a6 0.13 0.07 5.6e-11 0.1 0.1 0.11 0.1 1.8e-09 1.4e-09 4.5e-10 6.2e-10
4 pVTA mRNA stability Slc22a6 0.04 0.03 3.9e-03 0.04 0.04 0.02 0.03 6.9e-04 8.2e-04 5.3e-03 1.2e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.50.81.8-0.70.70.61.3
Area under the delay curve0.30.30.9-0.00.40.40.9
BMI with tail3.010.219.9-2.72.62.74.5
BMI without tail0.82.34.2-1.01.41.42.1
Body weight3.214.215.3-3.93.83.83.6
Weight adjusted by age0.50.81.5-1.20.71.00.6
Bone surface1.83.44.5-2.11.71.61.8
Bone volume0.81.52.4-1.31.00.91.5
Breakpoint value in progressive ratio session1.41.72.8-1.71.41.4-0.4
Number of licking bursts0.00.10.2-0.30.40.10.2
Context. condit. distance diff. score0.40.51.10.9-0.0-0.41.1
Locomotion velocity, session 10.20.20.40.30.40.30.7
Locomotion distance, session 10.91.22.1-0.41.20.91.4
Locomotion velocity, session 22.12.43.3-1.61.81.61.1
Locomotion distance, session 20.30.40.9-0.30.90.60.4
Locomotion velocity, session 31.21.44.1-0.40.90.72.0
Locomotion distance, session 30.10.20.3-0.30.40.50.4
Stereotopy head waving bouts, day 30.70.82.70.50.2-0.41.6
Stereotopy head waving duration, day 30.40.41.20.60.4-0.31.1
Locomotion velocity, session 70.20.20.60.10.4-0.20.8
Locomotion distance, session 70.30.31.20.30.20.11.1
Stereotopy head waving bouts, day 70.20.20.3-0.40.50.00.6
Stereotopy head waving duration, day 71.21.42.0-1.41.41.10.8
Locomotion velocity, session 80.10.10.20.50.40.1-0.1
Locomotion distance, session 80.60.82.10.90.0-0.51.5
Degree of sensitization distance0.80.83.10.20.1-0.21.8
Degree of sensitization stereotypy0.50.51.2-1.10.80.50.4
Conditioned locomotion0.50.60.8-0.80.90.80.3
Cocaine response after cond. corrected0.40.41.31.2-0.1-0.40.5
Cocaine response after cond. not corrected0.30.30.80.9-0.4-0.30.4
Cocaine response before conditioning0.30.30.9-0.9-0.40.3-0.4
Saline control response2.83.85.1-2.32.22.20.6
Bone: connectivity density1.72.73.1-1.61.51.61.8
Bone: cortical apparent density0.40.50.8-0.40.90.5-0.9
Bone: cortical area0.71.02.0-1.40.90.90.7
Bone: cortical porosity0.40.41.50.30.1-0.3-1.2
Bone: cortical porosity0.20.20.90.00.40.0-0.9
Bone: cortical thickness2.84.66.2-2.52.32.5-0.7
Bone: cortical thickness0.50.61.0-0.60.81.0-0.5
Bone: cortical tissue density0.50.71.1-0.61.00.7-0.9
Condit. Reinf. active minus inactive responses0.80.91.2-1.10.91.10.4
Condit. Reinf. active-inactive response ratio0.30.40.6-0.50.70.8-0.2
Condit. Reinf. active responses0.60.71.1-1.10.60.70.9
Condit. Reinf. inactive responses0.30.41.1-0.1-0.6-0.41.0
Incentive salience index mean1.21.51.8-1.31.11.21.2
Condit. Reinf. lever presses1.11.52.4-1.31.01.01.5
Condit. Reinf. active minus inactive responses0.30.30.60.2-0.5-0.7-0.7
Condit. Reinf. active-inactive response ratio0.70.81.90.6-0.9-1.40.1
Condit. Reinf. active responses0.10.10.2-0.40.30.2-0.3
Condit. Reinf. inactive responses0.40.51.0-0.50.71.0-0.3
Condit. Reinf. lever presses0.71.02.0-1.40.70.90.7
Condit. Reinf. lever reinforcers received0.20.20.4-0.60.50.3-0.4
Conditioned reinforcement - actives0.40.61.20.5-1.1-0.9-0.3
Conditioned reinforcement - inactives0.30.40.90.3-0.7-0.60.9
Conditioned locomotion2.02.53.51.9-1.7-1.80.7
Patch foraging indifference point 0 sec0.40.81.5-0.81.20.90.5
Patch foraging indifference point AUC0.60.91.9-1.40.90.7-0.5
Delay disc. indifference point, 0s delay0.40.51.30.7-0.3-0.31.1
Delay disc. indifference point, 16s delay0.20.20.6-0.30.20.20.8
Delay disc. indifference point, 2s delay0.40.40.80.6-0.6-0.50.9
Delay disc. indifference point, 24s delay0.20.20.3-0.10.50.60.4
Delay disc. indifference point, 4s delay0.80.81.3-0.31.00.91.1
Delay disc. indifference point, 8s delay0.10.20.60.8-0.1-0.30.0
Indifference point function ln k1.62.76.62.6-1.5-1.30.7
Indifference point function log k1.62.76.62.6-1.5-1.30.7
Patch foraging total patch changes 0 sec0.50.91.7-0.91.31.10.3
Patch foraging total patch changes 12 sec4.45.78.7-2.82.92.50.1
Patch foraging total patch changes 18 sec0.40.60.8-0.90.90.6-0.6
Patch foraging total patch changes 24 sec4.27.310.0-3.03.22.91.3
Patch foraging total patch changes 6 sec1.21.82.9-1.31.71.50.7
Patch foraging time to switch 0 sec0.20.41.2-0.60.30.21.1
Patch foraging water rate 0 sec0.20.40.70.8-0.5-0.5-0.8
Patch foraging water rate 12 sec0.71.43.21.8-1.2-0.9-0.4
Patch foraging water rate 18 sec0.20.30.60.6-0.20.10.8
Patch foraging water rate 24 sec0.71.02.01.4-1.0-0.9-0.4
Patch foraging water rate 6 sec0.50.71.61.3-0.8-0.7-0.3
Seeking ratio, delayed vs. immediate footshock0.10.10.2-0.40.20.20.5
Distance traveled before self-admin1.51.93.3-1.81.41.30.9
Distance traveled after self-admin0.40.40.7-0.90.60.7-0.4
Extensor digitorum longus weight5.822.730.0-5.55.25.12.7
Bone: elastic displacement0.40.51.30.7-0.4-0.3-1.1
Bone: elastic work0.91.22.2-1.11.21.50.1
Bone: endosteal estimation1.43.05.41.3-1.6-1.62.3
Bone: endosteal perimeter1.94.15.01.6-2.1-2.22.1
Epididymis fat weight0.72.53.71.1-1.9-1.71.4
Delta time in closed arm before/after self-admin1.61.52.4-0.81.51.50.9
Delta time in open arm before/after self-admin1.01.02.2-1.51.00.90.3
Diff in mean of infusions in LGA sessions2.02.43.8-1.72.01.70.0
Delay discount exponential model param0.30.30.80.0-0.5-0.4-0.9
Extinction: sum of active levers before priming3.23.54.5-2.12.12.01.1
Active lever presses in extinction session 61.61.63.0-1.71.31.30.3
Bone: final force1.52.43.3-1.81.41.41.5
Bone: final moment1.62.53.5-1.91.51.51.5
Food consumed during 24 hour testing period0.10.20.3-0.1-0.5-0.4-0.5
Glucose1.72.73.81.9-1.8-1.70.9
Heart weight0.71.03.60.6-0.3-0.01.9
Delay discount hyperbolic model param0.20.20.8-0.1-0.3-0.2-0.9
Intermittent access intake day 1-15 change1.22.53.81.2-1.9-1.8-1.1
Intermittent access intake escalation1.53.14.61.4-2.1-2.0-1.3
Intermittent access intake escalation 20.91.01.60.6-1.3-1.2-0.7
Intermitt. access day 1 inactive lever presses0.51.72.31.3-1.4-1.5-1.0
Intermitt. access day 15 inactive lever presses0.40.82.4-0.80.20.41.6
Intermitt. access escalation Index0.40.50.80.9-0.7-0.7-0.6
Intermittent access day 1 total infusions1.42.26.70.8-0.9-0.82.6
Intermittent access day 15 total infusions3.14.67.22.1-2.7-2.50.7
Intermittent access terminal intake (last 3 days)1.82.42.91.1-1.7-1.51.7
Intermittent access total infusions1.92.33.51.2-1.5-1.41.9
Intermittent access day 1 locomotion0.91.24.30.3-0.3-0.32.1
Intermittent access day 15 total locomotion0.61.12.50.5-0.9-0.81.6
Intermittent access total locomotion2.02.47.30.6-1.0-0.92.7
Intermittent access standard deviation0.61.22.21.0-1.5-1.3-0.3
Left kidney weight0.21.02.30.5-0.8-0.81.5
Right kidney weight0.10.41.00.2-0.6-0.61.0
Cocaine induced anxiety0.00.10.2-0.1-0.1-0.1-0.5
Post-drug Anxiety0.20.20.3-0.60.40.50.0
Baseline Anxiety0.50.60.9-0.60.90.90.5
Tail length0.41.52.1-1.21.51.3-0.7
Length with tail1.35.67.8-2.82.82.60.4
Length without tail2.89.012.0-3.53.53.31.1
Times rat made contact with spout0.30.40.5-0.40.70.6-0.6
Lifetime Intake1.51.83.21.1-1.3-1.11.8
Liver weight, left0.81.31.71.2-1.3-1.2-0.7
Liver weight, right0.71.32.21.5-1.2-1.10.5
Locomotor activity0.30.51.21.1-0.6-0.3-0.7
Locomotor testing distance0.30.51.41.2-0.7-0.3-0.4
Locomotor testing rearing0.40.81.41.2-1.0-0.6-0.5
Locomotion in novel chamber1.62.13.51.4-1.9-1.70.2
Locomotion in novel chamber post-restriction1.52.43.81.7-1.6-1.9-0.7
Fecal boli incidents, locomotor time 10.40.51.00.4-0.9-1.0-0.4
Change in fecal boli incidents, locomotor task0.50.51.41.2-0.5-0.60.1
Time >=10cm from walls, locomotor time 12.12.23.81.4-1.7-2.00.3
Bouts of movement, locomotor time 11.01.24.4-0.50.20.1-2.1
Total resting periods, locomotor time 10.70.83.1-0.40.10.0-1.8
Rest time, locomotor task time 11.62.02.31.5-1.5-1.5-1.2
Distance moved, locomotor task time 10.30.50.8-0.50.50.70.9
Vertical activity count, locomotor time 10.10.30.50.7-0.6-0.60.1
Time >=10cm from walls, locomotor time 20.20.30.50.1-0.6-0.7-0.7
Bouts of movement, locomotor time 20.71.12.0-1.41.01.10.0
Total resting periods, locomotor time 20.30.51.0-1.00.60.7-0.0
Rest time, locomotor task time 22.32.94.52.1-1.7-2.0-0.7
Distance moved, locomotor task time 20.40.40.6-0.80.50.8-0.6
Vertical activity count, locomotor time 20.20.20.90.00.10.3-1.0
Light reinforcement 10.10.10.40.0-0.3-0.1-0.6
Light reinforcement 20.30.51.0-0.0-1.0-1.00.4
Bone: marrow area1.53.35.11.5-1.7-1.72.2
Bone: maximum diameter0.20.41.3-0.60.1-0.11.2
Bone: maximum force2.44.36.4-2.31.61.72.5
Bone: maximum moment2.54.35.9-2.41.61.82.4
Mean time between licks in bursts0.40.92.1-0.60.81.40.6
Mean num. licks in bursts0.10.20.50.3-0.20.0-0.7
Cd content in liver0.91.01.71.2-0.8-1.3-0.3
Co content in liver0.91.02.41.1-0.5-0.5-1.5
Cu content in liver0.10.10.30.10.00.0-0.6
Fe content in liver0.00.00.10.30.0-0.10.2
K content in liver0.70.61.0-0.80.60.71.0
Mg content in liver0.40.41.3-0.10.50.41.1
Mn content in liver2.52.84.6-2.21.81.70.6
Na content in liver0.40.40.6-0.80.50.60.6
Rb content in liver1.51.83.11.8-1.4-1.4-0.4
Se content in liver0.00.10.1-0.4-0.0-0.10.3
Sr content in liver3.42.94.2-2.02.11.80.2
Zn content in liver2.42.74.3-1.72.11.70.9
Bone: minimum diameter1.11.94.40.8-1.2-1.22.1
Time in familiar zone, hab. session 10.20.20.5-0.30.10.40.7
Time in novel zone, hab. session 11.01.01.51.2-1.0-0.9-0.8
Total zone transitions, hab. session 10.30.41.0-0.51.00.5-0.0
Total locomotion distance, hab. session 10.20.30.70.30.1-0.50.9
Locomotion velocity, hab. session 10.20.30.5-0.30.70.10.7
Time in familiar zone, hab. session 20.40.41.10.3-0.70.1-1.0
Time in novel zone, hab. session 20.70.71.5-0.60.80.51.2
Total zone transitions, hab. session 21.62.02.7-1.21.61.51.3
Total locomotion distance, hab. session 20.40.51.3-0.30.70.41.1
Locomotion velocity, hab. session 20.30.51.6-0.10.50.11.2
Novel to familiar place preference ratio1.31.52.5-1.61.21.10.7
Novelty place preference0.80.81.6-1.30.90.80.6
Time in novel zone, NPP test0.90.91.6-1.30.90.90.7
Total zone transitions, NPP test1.11.62.9-1.01.71.30.8
Total locomotion distance, NPP test0.20.30.60.00.70.30.8
Locomotion velocity, NPP test0.10.10.30.10.60.10.4
Intraocular pressure0.40.51.60.3-0.5-0.5-1.2
Delta distance traveled before/after self-admin0.30.30.70.7-0.3-0.2-0.8
Delta ambulatory time before/after self-admin0.50.61.10.9-0.5-0.4-1.0
Parametrial fat weight1.63.65.01.8-2.1-2.21.4
Pavlov. Cond. lever latency1.01.31.81.3-0.9-1.0-1.4
Pavlov. Cond. magazine entry latency0.81.01.7-1.30.50.71.3
Pavlov. Cond. change in total contacts0.20.20.5-0.70.20.00.5
Pavlov. Cond. index score0.50.61.3-1.10.50.60.6
Pavlov. Cond. latency score0.50.71.1-1.00.50.70.9
Pavlov. Cond. lever contacts0.60.71.5-0.90.50.61.2
Pavlov. Cond. magazine entry number0.40.51.41.2-0.5-0.6-0.1
Pavlov. Cond. intertrial magazine entries0.30.31.1-0.1-0.3-0.3-1.1
Pavlov. Cond. lever-magazine prob. diff.0.50.61.4-1.20.50.60.7
Pavlov. Cond. response bias0.60.71.7-1.30.60.70.6
Pavlov. Cond. lever latency0.40.61.21.1-0.4-0.7-0.7
Pavlov. Cond. magazine entry latency3.54.27.5-2.71.92.30.6
Pavlov. Cond. change in total contacts0.71.12.9-1.70.71.00.5
Pavlov. Cond. index score1.72.34.7-2.21.11.60.8
Pavlov. Cond. latency score1.52.04.2-2.01.11.40.9
Pavlov. Cond. lever contacts0.30.41.0-1.00.20.60.4
Pavlov. Cond. magazine entry number5.16.311.13.3-2.4-2.7-0.7
Pavlov. Cond. intertrial magazine entries1.31.92.71.6-1.2-1.6-1.0
Pavlov. Cond. lever-magazine prob. diff.1.92.65.4-2.31.21.70.7
Pavlov. Cond. response bias1.52.03.9-2.01.11.60.8
Time in closed arm before self-admin0.10.20.40.0-0.6-0.50.2
Time in closed arm after self-admin0.60.61.01.0-0.9-0.7-0.0
Time in open arm before self-admin0.30.31.21.1-0.1-0.1-0.3
Time in open arm after self-admin0.60.61.1-0.71.10.9-0.1
Bone: periosteal estimation0.51.13.9-0.1-0.4-0.42.0
Bone: periosteal perimeter0.30.51.6-0.2-0.3-0.41.3
Bone: post-yield work1.42.07.00.2-0.7-0.72.6
Progressive ratio test 1 active lever presses0.50.60.70.9-0.8-0.80.6
Progressive ratio test 1 breakpoint0.50.60.70.9-0.8-0.80.5
Progressive ratio test 1 inactive lever presses0.50.71.3-0.70.60.71.1
Progressive ratio test 2 active lever presses1.21.52.11.1-1.4-1.30.8
Progressive ratio test 2 breakpoint1.21.41.91.1-1.4-1.30.9
Progressive ratio test 2 inactive lever presses0.81.31.71.0-1.3-1.21.0
Incentive Sensitization - Responses0.60.82.3-0.80.30.51.5
Incentive Sensitization - Breakpoint0.50.72.3-0.60.20.31.5
Sum of active levers in priming session hrs 5-60.70.71.4-1.00.30.2-1.2
Progressive ratio0.30.51.7-0.3-0.3-0.11.3
Food seeking constrained by brief footshock0.00.00.00.1-0.0-0.10.2
Seeking ratio, punishment vs. effort0.10.20.20.40.40.3-0.4
Retroperitoneal fat weight2.811.916.14.0-4.0-3.90.6
Reaction time number correct0.40.71.4-1.10.71.20.0
Reaction time mean minus median0.10.40.8-0.90.20.0-0.8
Reaction time mean minus median AUC0.20.51.8-0.5-0.0-0.0-1.4
Reaction time num false alarms0.20.30.60.8-0.00.1-0.8
Reaction time num false alarms AUC0.20.40.70.30.60.6-0.9
Reaction time trials correct on left0.40.71.4-1.10.71.20.0
Reaction time trials on left0.40.81.4-1.10.71.2-0.1
Reaction time mean0.20.30.60.2-0.6-0.6-0.8
Reaction time mean AUC0.30.50.70.2-0.8-0.7-0.8
Median of all reaction times0.10.10.20.2-0.4-0.4-0.4
Reaction time omissions0.30.51.1-0.60.50.4-1.1
Reaction time false alarm rate0.20.30.80.90.0-0.1-0.5
Reaction time premature initiation rate4.76.58.8-2.62.73.01.8
Reaction time premature initiations4.47.911.8-3.12.93.41.2
Std. dev. reaction times0.40.82.30.2-0.5-0.7-1.5
Reaction time trials completed0.40.81.4-1.10.71.2-0.1
Reaction time trials AUC0.40.71.3-1.00.61.10.0
Run reversals in cocaine runway, females1.41.43.0-0.61.11.11.7
Run reversals in cocaine runway, males0.40.40.60.8-0.3-0.7-0.8
Latency to leave start box in cocaine runway0.50.60.90.7-0.8-0.61.0
Latency to leave start box in cocaine runway, F0.10.10.4-0.20.10.20.6
Latency to leave start box in cocaine runway, M1.81.72.51.6-1.5-1.30.4
Std. dev. time between licks in bursts0.00.10.20.2-0.10.40.1
Total sessions with >9 infusions0.70.81.11.0-1.1-1.00.5
Short access day 1 total inactive lever presses0.30.41.50.3-0.1-0.11.2
Short access day 10 total inactive lever presses0.20.60.91.0-0.7-0.8-0.6
Short access day 1 total infusions1.01.31.81.3-1.3-1.20.7
Short access day 10 total infusions1.01.34.00.5-0.7-0.62.0
Short access total infusions0.91.22.60.9-0.8-0.71.6
Short access day 1 locomotion0.40.40.70.5-0.7-0.60.8
Short access day 10 total locomotion0.40.83.0-0.20.0-0.11.7
Short access total locomotion0.50.62.00.3-0.5-0.51.4
One hour access (0.3 mA shock)1.31.51.81.2-1.4-1.31.1
Compulsive drug intake1.11.31.8-1.01.31.3-0.8
One hour access (shock baseline)2.84.36.12.1-2.5-2.50.7
Social response proportion0.10.10.2-0.4-0.00.30.1
Social responses0.30.41.1-0.40.20.4-1.1
Social time0.20.20.8-0.00.30.1-0.9
Soleus weight2.26.49.33.0-2.8-2.8-0.9
Bone: stiffness0.50.71.7-1.30.50.60.9
Tibialis anterior weight7.324.734.8-5.95.85.31.4
Time to tail flick, vehicle, before self-admin0.50.51.8-0.30.20.11.3
Time to tail flick, vehicle, after self-admin0.50.61.3-0.40.70.71.2
Time to tail flick, test, before self-admin1.41.54.3-0.50.90.82.1
Time to tail flick, test, after self-admin0.00.00.0-0.2-0.1-0.1-0.1
Delta time to tail flick, vehicle, before/after SA0.30.20.5-0.30.70.60.1
Delta time to tail flick, test, before/after SA1.01.03.7-0.0-0.5-0.4-1.9
Tibia length0.82.34.6-2.11.71.10.7
Ambulatory time before self-admin0.91.42.8-1.71.11.10.6
Ambulatory time after self-admin0.10.10.3-0.60.20.30.0
Bone: tissue strength0.10.10.40.2-0.6-0.3-0.2
Total heroin consumption4.55.37.4-2.72.72.5-0.3
Bone: trabecular number1.11.93.1-1.31.21.21.7
Bone: trabecular spacing0.60.81.70.8-0.8-0.4-1.3
Bone: trabecular thickness0.20.20.40.4-0.6-0.60.1
Bone: trabecular tissue density4.56.79.13.0-2.5-2.8-2.0
Water consumed over 24 hours0.70.91.2-1.11.01.1-0.2
Number of responses in last shaping day0.20.20.3-0.40.60.50.2