Slc22a6

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 OFC isoform ratio XM_006230978.4 0.13 0.09 7.5e-03 0.07 0.03 -0.01 0.05 8.5e-03 6.4e-02 7.1e-01 2.7e-02
2 PL mRNA stability Slc22a6 0.04 0.02 1.4e-04 0.04 0.03 0.03 0.03 6.4e-05 1.3e-04 1.1e-04 1.1e-04
3 Brain mRNA stability Slc22a6 0.13 0.07 5.6e-11 0.1 0.1 0.11 0.1 1.8e-09 1.4e-09 4.5e-10 5.7e-10
4 pVTA mRNA stability Slc22a6 0.04 0.03 3.9e-03 0.04 0.04 0.02 0.03 6.9e-04 8.2e-04 5.3e-03 1.2e-03

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.40.81.80.7-0.7-0.6-1.3
Area under the delay curve0.20.30.90.0-0.4-0.4-0.9
BMI with tail2.910.219.92.7-2.6-2.7-4.5
BMI without tail0.42.34.21.0-1.4-1.4-2.1
Body weight3.214.215.33.9-3.8-3.8-3.6
Weight adjusted by age0.30.81.51.2-0.7-1.0-0.6
Bone surface1.73.44.52.1-1.7-1.6-1.8
Bone volume0.71.52.41.3-1.0-0.9-1.5
Breakpoint value in progressive ratio session0.91.72.81.7-1.4-1.40.4
Number of licking bursts0.00.10.20.3-0.4-0.1-0.2
Context. condit. distance diff. score0.40.51.1-0.90.00.4-1.1
Locomotion velocity, session 10.20.20.4-0.3-0.4-0.3-0.7
Locomotion distance, session 10.91.22.10.4-1.2-0.9-1.4
Locomotion velocity, session 22.02.43.31.6-1.8-1.6-1.1
Locomotion distance, session 20.30.40.90.3-0.9-0.6-0.4
Locomotion velocity, session 31.21.44.10.4-0.9-0.7-2.0
Locomotion distance, session 30.10.20.30.3-0.4-0.5-0.4
Stereotopy head waving bouts, day 30.70.82.7-0.5-0.20.4-1.6
Stereotopy head waving duration, day 30.40.41.2-0.6-0.40.3-1.1
Locomotion velocity, session 70.20.20.6-0.1-0.40.2-0.8
Locomotion distance, session 70.30.31.2-0.3-0.2-0.1-1.1
Stereotopy head waving bouts, day 70.10.20.30.4-0.5-0.0-0.6
Stereotopy head waving duration, day 71.21.42.01.4-1.4-1.1-0.8
Locomotion velocity, session 80.10.10.2-0.5-0.4-0.10.1
Locomotion distance, session 80.60.82.1-0.9-0.00.5-1.5
Degree of sensitization distance0.70.83.1-0.2-0.10.2-1.8
Degree of sensitization stereotypy0.50.51.21.1-0.8-0.5-0.4
Conditioned locomotion0.50.60.80.8-0.9-0.8-0.3
Cocaine response after cond. corrected0.30.41.3-1.20.10.4-0.5
Cocaine response after cond. not corrected0.20.30.8-0.90.40.3-0.4
Cocaine response before conditioning0.30.30.90.90.4-0.30.4
Saline control response2.73.85.12.3-2.2-2.2-0.6
Bone: connectivity density1.72.73.11.6-1.5-1.6-1.8
Bone: cortical apparent density0.30.50.80.4-0.9-0.50.9
Bone: cortical area0.61.02.01.4-0.9-0.9-0.7
Bone: cortical porosity0.40.41.5-0.3-0.10.31.2
Bone: cortical porosity0.20.20.9-0.0-0.4-0.00.9
Bone: cortical thickness2.74.66.22.5-2.3-2.50.7
Bone: cortical thickness0.50.61.00.6-0.8-1.00.5
Bone: cortical tissue density0.40.71.10.6-1.0-0.70.9
Condit. Reinf. active minus inactive responses0.80.91.21.1-0.9-1.1-0.4
Condit. Reinf. active-inactive response ratio0.30.40.60.5-0.7-0.80.2
Condit. Reinf. active responses0.60.71.11.1-0.6-0.7-0.9
Condit. Reinf. inactive responses0.30.41.10.10.60.4-1.0
Incentive salience index mean1.11.51.81.3-1.1-1.2-1.2
Condit. Reinf. lever presses1.01.52.41.3-1.0-1.0-1.5
Condit. Reinf. active minus inactive responses0.20.30.6-0.20.50.70.7
Condit. Reinf. active-inactive response ratio0.50.81.9-0.60.91.4-0.1
Condit. Reinf. active responses0.10.10.20.4-0.3-0.20.3
Condit. Reinf. inactive responses0.30.51.00.5-0.7-1.00.3
Condit. Reinf. lever presses0.71.02.01.4-0.7-0.9-0.7
Condit. Reinf. lever reinforcers received0.20.20.40.6-0.5-0.30.4
Conditioned reinforcement - actives0.20.61.2-0.51.10.90.3
Conditioned reinforcement - inactives0.20.40.9-0.30.70.6-0.9
Conditioned locomotion1.72.53.5-1.91.71.8-0.7
Patch foraging indifference point 0 sec0.30.81.50.8-1.2-0.9-0.5
Patch foraging indifference point AUC0.40.91.91.4-0.9-0.70.5
Delay disc. indifference point, 0s delay0.40.51.3-0.70.30.3-1.1
Delay disc. indifference point, 16s delay0.10.20.60.3-0.2-0.2-0.8
Delay disc. indifference point, 2s delay0.40.40.8-0.60.60.5-0.9
Delay disc. indifference point, 24s delay0.10.20.30.1-0.5-0.6-0.4
Delay disc. indifference point, 4s delay0.80.81.30.3-1.0-0.9-1.1
Delay disc. indifference point, 8s delay0.10.20.6-0.80.10.3-0.0
Indifference point function ln k0.92.76.6-2.61.51.3-0.7
Indifference point function log k0.92.76.6-2.61.51.3-0.7
Patch foraging total patch changes 0 sec0.30.91.70.9-1.3-1.1-0.3
Patch foraging total patch changes 12 sec4.35.78.72.8-2.9-2.5-0.1
Patch foraging total patch changes 18 sec0.20.60.80.9-0.9-0.60.6
Patch foraging total patch changes 24 sec2.17.310.03.0-3.2-2.9-1.3
Patch foraging total patch changes 6 sec1.11.82.91.3-1.7-1.5-0.7
Patch foraging time to switch 0 sec0.10.41.20.6-0.3-0.2-1.1
Patch foraging water rate 0 sec0.10.40.7-0.80.50.50.8
Patch foraging water rate 12 sec0.31.43.2-1.81.20.90.4
Patch foraging water rate 18 sec0.10.30.6-0.60.2-0.1-0.8
Patch foraging water rate 24 sec0.71.02.0-1.41.00.90.4
Patch foraging water rate 6 sec0.50.71.6-1.30.80.70.3
Seeking ratio, delayed vs. immediate footshock0.10.10.20.4-0.2-0.2-0.5
Distance traveled before self-admin0.91.93.31.8-1.4-1.3-0.9
Distance traveled after self-admin0.20.40.70.9-0.6-0.70.4
Extensor digitorum longus weight5.722.730.05.5-5.2-5.1-2.7
Bone: elastic displacement0.40.51.3-0.70.40.31.1
Bone: elastic work0.91.22.21.1-1.2-1.5-0.1
Bone: endosteal estimation1.23.05.4-1.31.61.6-2.3
Bone: endosteal perimeter1.74.15.0-1.62.12.2-2.1
Epididymis fat weight0.52.53.7-1.11.91.7-1.4
Delta time in closed arm before/after self-admin1.61.52.40.8-1.5-1.5-0.9
Delta time in open arm before/after self-admin0.91.02.21.5-1.0-0.9-0.3
Diff in mean of infusions in LGA sessions1.42.43.81.7-2.0-1.7-0.0
Delay discount exponential model param0.20.30.8-0.00.50.40.9
Extinction: sum of active levers before priming2.33.54.52.1-2.1-2.0-1.1
Active lever presses in extinction session 61.61.63.01.7-1.3-1.3-0.3
Bone: final force1.52.43.31.8-1.4-1.4-1.5
Bone: final moment1.62.53.51.9-1.5-1.5-1.5
Food consumed during 24 hour testing period0.10.20.30.10.50.40.5
Glucose1.72.73.8-1.91.81.7-0.9
Heart weight0.61.03.6-0.60.30.0-1.9
Delay discount hyperbolic model param0.20.20.80.10.30.20.9
Intermittent access intake day 1-15 change0.52.53.8-1.21.91.81.1
Intermittent access intake escalation0.63.14.6-1.42.12.01.3
Intermittent access intake escalation 20.61.01.6-0.61.31.20.7
Intermitt. access day 1 inactive lever presses0.11.72.3-1.31.41.51.0
Intermitt. access day 15 inactive lever presses0.20.82.40.8-0.2-0.4-1.6
Intermitt. access escalation Index0.20.50.8-0.90.70.70.6
Intermittent access day 1 total infusions0.72.26.7-0.80.90.8-2.6
Intermittent access day 15 total infusions1.94.67.2-2.12.72.5-0.7
Intermittent access terminal intake (last 3 days)1.32.42.9-1.11.71.5-1.7
Intermittent access total infusions1.92.33.5-1.21.51.4-1.9
Intermittent access day 1 locomotion0.61.24.3-0.30.30.3-2.1
Intermittent access day 15 total locomotion0.31.12.5-0.50.90.8-1.6
Intermittent access total locomotion2.02.47.3-0.61.00.9-2.7
Intermittent access standard deviation0.21.22.2-1.01.51.30.3
Left kidney weight0.11.02.3-0.50.80.8-1.5
Right kidney weight0.10.41.0-0.20.60.6-1.0
Cocaine induced anxiety0.00.10.20.10.10.10.5
Post-drug Anxiety0.20.20.30.6-0.4-0.5-0.0
Baseline Anxiety0.40.60.90.6-0.9-0.9-0.5
Tail length0.31.52.11.2-1.5-1.30.7
Length with tail1.35.67.82.8-2.8-2.6-0.4
Length without tail1.79.012.03.5-3.5-3.3-1.1
Times rat made contact with spout0.30.40.50.4-0.7-0.60.6
Lifetime Intake1.41.83.2-1.11.31.1-1.8
Liver weight, left0.71.31.7-1.21.31.20.7
Liver weight, right0.71.32.2-1.51.21.1-0.5
Locomotor activity0.30.51.2-1.10.60.30.7
Locomotor testing distance0.20.51.4-1.20.70.30.4
Locomotor testing rearing0.20.81.4-1.21.00.60.5
Locomotion in novel chamber1.62.13.5-1.41.91.7-0.2
Locomotion in novel chamber post-restriction0.82.43.8-1.71.61.90.7
Fecal boli incidents, locomotor time 10.20.51.0-0.40.91.00.4
Change in fecal boli incidents, locomotor task0.50.51.4-1.20.50.6-0.1
Time >=10cm from walls, locomotor time 11.82.23.8-1.41.72.0-0.3
Bouts of movement, locomotor time 10.91.24.40.5-0.2-0.12.1
Total resting periods, locomotor time 10.70.83.10.4-0.1-0.01.8
Rest time, locomotor task time 11.22.02.3-1.51.51.51.2
Distance moved, locomotor task time 10.20.50.80.5-0.5-0.7-0.9
Vertical activity count, locomotor time 10.00.30.5-0.70.60.6-0.1
Time >=10cm from walls, locomotor time 20.10.30.5-0.10.60.70.7
Bouts of movement, locomotor time 20.31.12.01.4-1.0-1.1-0.0
Total resting periods, locomotor time 20.10.51.01.0-0.6-0.70.0
Rest time, locomotor task time 21.72.94.5-2.11.72.00.7
Distance moved, locomotor task time 20.30.40.60.8-0.5-0.80.6
Vertical activity count, locomotor time 20.10.20.9-0.0-0.1-0.31.0
Light reinforcement 10.00.10.4-0.00.30.10.6
Light reinforcement 20.20.51.00.01.01.0-0.4
Bone: marrow area1.33.35.1-1.51.71.7-2.2
Bone: maximum diameter0.20.41.30.6-0.10.1-1.2
Bone: maximum force2.24.36.42.3-1.6-1.7-2.5
Bone: maximum moment2.34.35.92.4-1.6-1.8-2.4
Mean time between licks in bursts0.10.92.10.6-0.8-1.4-0.6
Mean num. licks in bursts0.10.20.5-0.30.2-0.00.7
Cd content in liver0.91.01.7-1.20.81.30.3
Co content in liver0.91.02.4-1.10.50.51.5
Cu content in liver0.10.10.3-0.1-0.0-0.00.6
Fe content in liver0.00.00.1-0.3-0.00.1-0.2
K content in liver0.70.61.00.8-0.6-0.7-1.0
Mg content in liver0.40.41.30.1-0.5-0.4-1.1
Mn content in liver2.52.84.62.2-1.8-1.7-0.6
Na content in liver0.30.40.60.8-0.5-0.6-0.6
Rb content in liver1.51.83.1-1.81.41.40.4
Se content in liver0.00.10.10.40.00.1-0.3
Sr content in liver3.42.94.22.0-2.1-1.8-0.2
Zn content in liver2.32.74.31.7-2.1-1.7-0.9
Bone: minimum diameter1.01.94.4-0.81.21.2-2.1
Time in familiar zone, hab. session 10.20.20.50.3-0.1-0.4-0.7
Time in novel zone, hab. session 10.91.01.5-1.21.00.90.8
Total zone transitions, hab. session 10.30.41.00.5-1.0-0.50.0
Total locomotion distance, hab. session 10.20.30.7-0.3-0.10.5-0.9
Locomotion velocity, hab. session 10.20.30.50.3-0.7-0.1-0.7
Time in familiar zone, hab. session 20.40.41.1-0.30.7-0.11.0
Time in novel zone, hab. session 20.60.71.50.6-0.8-0.5-1.2
Total zone transitions, hab. session 21.62.02.71.2-1.6-1.5-1.3
Total locomotion distance, hab. session 20.40.51.30.3-0.7-0.4-1.1
Locomotion velocity, hab. session 20.30.51.60.1-0.5-0.1-1.2
Novel to familiar place preference ratio1.11.52.51.6-1.2-1.1-0.7
Novelty place preference0.60.81.61.3-0.9-0.8-0.6
Time in novel zone, NPP test0.80.91.61.3-0.9-0.9-0.7
Total zone transitions, NPP test1.11.62.91.0-1.7-1.3-0.8
Total locomotion distance, NPP test0.20.30.6-0.0-0.7-0.3-0.8
Locomotion velocity, NPP test0.10.10.3-0.1-0.6-0.1-0.4
Intraocular pressure0.30.51.6-0.30.50.51.2
Delta distance traveled before/after self-admin0.30.30.7-0.70.30.20.8
Delta ambulatory time before/after self-admin0.30.61.1-0.90.50.41.0
Parametrial fat weight1.53.65.0-1.82.12.2-1.4
Pavlov. Cond. lever latency1.01.31.8-1.30.91.01.4
Pavlov. Cond. magazine entry latency0.81.01.71.3-0.5-0.7-1.3
Pavlov. Cond. change in total contacts0.20.20.50.7-0.2-0.0-0.5
Pavlov. Cond. index score0.50.61.31.1-0.5-0.6-0.6
Pavlov. Cond. latency score0.50.71.11.0-0.5-0.7-0.9
Pavlov. Cond. lever contacts0.60.71.50.9-0.5-0.6-1.2
Pavlov. Cond. magazine entry number0.40.51.4-1.20.50.60.1
Pavlov. Cond. intertrial magazine entries0.30.31.10.10.30.31.1
Pavlov. Cond. lever-magazine prob. diff.0.50.61.41.2-0.5-0.6-0.7
Pavlov. Cond. response bias0.60.71.71.3-0.6-0.7-0.6
Pavlov. Cond. lever latency0.40.61.2-1.10.40.70.7
Pavlov. Cond. magazine entry latency3.04.27.52.7-1.9-2.3-0.6
Pavlov. Cond. change in total contacts0.51.12.91.7-0.7-1.0-0.5
Pavlov. Cond. index score1.42.34.72.2-1.1-1.6-0.8
Pavlov. Cond. latency score1.32.04.22.0-1.1-1.4-0.9
Pavlov. Cond. lever contacts0.30.41.01.0-0.2-0.6-0.4
Pavlov. Cond. magazine entry number4.86.311.1-3.32.42.70.7
Pavlov. Cond. intertrial magazine entries0.91.92.7-1.61.21.61.0
Pavlov. Cond. lever-magazine prob. diff.1.72.65.42.3-1.2-1.7-0.7
Pavlov. Cond. response bias1.52.03.92.0-1.1-1.6-0.8
Time in closed arm before self-admin0.10.20.4-0.00.60.5-0.2
Time in closed arm after self-admin0.50.61.0-1.00.90.70.0
Time in open arm before self-admin0.30.31.2-1.10.10.10.3
Time in open arm after self-admin0.50.61.10.7-1.1-0.90.1
Bone: periosteal estimation0.41.13.90.10.40.4-2.0
Bone: periosteal perimeter0.20.51.60.20.30.4-1.3
Bone: post-yield work1.22.07.0-0.20.70.7-2.6
Progressive ratio test 1 active lever presses0.30.60.7-0.90.80.8-0.6
Progressive ratio test 1 breakpoint0.30.60.7-0.90.80.8-0.5
Progressive ratio test 1 inactive lever presses0.20.71.30.7-0.6-0.7-1.1
Progressive ratio test 2 active lever presses1.01.52.1-1.11.41.3-0.8
Progressive ratio test 2 breakpoint1.11.41.9-1.11.41.3-0.9
Progressive ratio test 2 inactive lever presses0.41.31.7-1.01.31.2-1.0
Incentive Sensitization - Responses0.30.82.30.8-0.3-0.5-1.5
Incentive Sensitization - Breakpoint0.30.72.30.6-0.2-0.3-1.5
Sum of active levers in priming session hrs 5-60.70.71.41.0-0.3-0.21.2
Progressive ratio0.20.51.70.30.30.1-1.3
Food seeking constrained by brief footshock0.00.00.0-0.10.00.1-0.2
Seeking ratio, punishment vs. effort0.10.20.2-0.4-0.4-0.30.4
Retroperitoneal fat weight2.711.916.1-4.04.03.9-0.6
Reaction time number correct0.20.71.41.1-0.7-1.2-0.0
Reaction time mean minus median0.10.40.80.9-0.2-0.00.8
Reaction time mean minus median AUC0.10.51.80.50.00.01.4
Reaction time num false alarms0.20.30.6-0.80.0-0.10.8
Reaction time num false alarms AUC0.20.40.7-0.3-0.6-0.60.9
Reaction time trials correct on left0.20.71.41.1-0.7-1.2-0.0
Reaction time trials on left0.20.81.41.1-0.7-1.20.1
Reaction time mean0.20.30.6-0.20.60.60.8
Reaction time mean AUC0.20.50.7-0.20.80.70.8
Median of all reaction times0.10.10.2-0.20.40.40.4
Reaction time omissions0.30.51.10.6-0.5-0.41.1
Reaction time false alarm rate0.20.30.8-0.9-0.00.10.5
Reaction time premature initiation rate4.26.58.82.6-2.7-3.0-1.8
Reaction time premature initiations2.67.911.83.1-2.9-3.4-1.2
Std. dev. reaction times0.20.82.3-0.20.50.71.5
Reaction time trials completed0.20.81.41.1-0.7-1.20.1
Reaction time trials AUC0.20.71.31.0-0.6-1.1-0.0
Run reversals in cocaine runway, females1.21.43.00.6-1.1-1.1-1.7
Run reversals in cocaine runway, males0.40.40.6-0.80.30.70.8
Latency to leave start box in cocaine runway0.40.60.9-0.70.80.6-1.0
Latency to leave start box in cocaine runway, F0.10.10.40.2-0.1-0.2-0.6
Latency to leave start box in cocaine runway, M1.81.72.5-1.61.51.3-0.4
Std. dev. time between licks in bursts0.00.10.2-0.20.1-0.4-0.1
Total sessions with >9 infusions0.70.81.1-1.01.11.0-0.5
Short access day 1 total inactive lever presses0.20.41.5-0.30.10.1-1.2
Short access day 10 total inactive lever presses0.10.60.9-1.00.70.80.6
Short access day 1 total infusions0.71.31.8-1.31.31.2-0.7
Short access day 10 total infusions0.81.34.0-0.50.70.6-2.0
Short access total infusions0.81.22.6-0.90.80.7-1.6
Short access day 1 locomotion0.30.40.7-0.50.70.6-0.8
Short access day 10 total locomotion0.20.83.00.2-0.00.1-1.7
Short access total locomotion0.40.62.0-0.30.50.5-1.4
One hour access (0.3 mA shock)1.31.51.8-1.21.41.3-1.1
Compulsive drug intake0.91.31.81.0-1.3-1.30.8
One hour access (shock baseline)1.64.36.1-2.12.52.5-0.7
Social response proportion0.10.10.20.40.0-0.3-0.1
Social responses0.30.41.10.4-0.2-0.41.1
Social time0.10.20.80.0-0.3-0.10.9
Soleus weight2.26.49.3-3.02.82.80.9
Bone: stiffness0.40.71.71.3-0.5-0.6-0.9
Tibialis anterior weight7.224.734.85.9-5.8-5.3-1.4
Time to tail flick, vehicle, before self-admin0.40.51.80.3-0.2-0.1-1.3
Time to tail flick, vehicle, after self-admin0.30.61.30.4-0.7-0.7-1.2
Time to tail flick, test, before self-admin1.31.54.30.5-0.9-0.8-2.1
Time to tail flick, test, after self-admin0.00.00.00.20.10.10.1
Delta time to tail flick, vehicle, before/after SA0.20.20.50.3-0.7-0.6-0.1
Delta time to tail flick, test, before/after SA0.81.03.70.00.50.41.9
Tibia length0.82.34.62.1-1.7-1.1-0.7
Ambulatory time before self-admin0.51.42.81.7-1.1-1.1-0.6
Ambulatory time after self-admin0.10.10.30.6-0.2-0.3-0.0
Bone: tissue strength0.10.10.4-0.20.60.30.2
Total heroin consumption4.55.37.42.7-2.7-2.50.3
Bone: trabecular number1.01.93.11.3-1.2-1.2-1.7
Bone: trabecular spacing0.60.81.7-0.80.80.41.3
Bone: trabecular thickness0.20.20.4-0.40.60.6-0.1
Bone: trabecular tissue density3.86.79.1-3.02.52.82.0
Water consumed over 24 hours0.50.91.21.1-1.0-1.10.2
Number of responses in last shaping day0.20.20.30.4-0.6-0.5-0.2