Slc22a25

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver isoform ratio XM_039093100.1 0.03 0.02 5.0e-03 0.02 0.02 0 0.01 2.3e-03 4.7e-03 1.0e-01 7.1e-03
2 Liver intron excision ratio chr1_205471828_205477719 0.05 0.03 3.2e-04 0.01 0.03 0.03 0.03 1.1e-02 3.8e-04 4.6e-04 4.5e-04
3 Liver intron excision ratio chr1_205477823_205498396 0.06 0.04 1.0e-03 0.03 0.01 0.02 0.03 1.2e-04 2.7e-02 4.4e-03 6.4e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.10.20.50.7-0.00.3
Area under the delay curve0.50.51.0-0.11.0-0.7
BMI with tail0.92.87.72.80.9-0.1
BMI without tail0.51.01.81.40.7-0.7
Body weight1.45.917.34.2-0.5-0.3
Weight adjusted by age1.41.62.61.6-1.11.0
Bone surface1.52.63.51.9-1.41.6
Bone volume1.01.72.41.3-1.11.6
Breakpoint value in progressive ratio session2.52.74.31.6-2.11.2
Number of licking bursts0.00.00.00.1-0.00.1
Context. condit. distance diff. score1.21.42.5-0.81.6-1.1
Locomotion velocity, session 11.21.32.1-0.41.2-1.5
Locomotion distance, session 10.70.91.30.71.1-1.1
Locomotion velocity, session 21.01.23.41.8-0.50.1
Locomotion distance, session 20.30.50.80.40.7-0.9
Locomotion velocity, session 30.70.81.80.51.3-0.7
Locomotion distance, session 30.40.40.60.20.7-0.8
Stereotopy head waving bouts, day 31.01.12.8-0.71.7-0.3
Stereotopy head waving duration, day 30.70.81.7-0.71.3-0.5
Locomotion velocity, session 70.20.20.4-0.30.60.1
Locomotion distance, session 71.11.42.8-0.51.7-1.1
Stereotopy head waving bouts, day 70.60.61.30.1-0.71.2
Stereotopy head waving duration, day 71.21.52.31.5-1.20.8
Locomotion velocity, session 80.81.02.0-0.30.9-1.4
Locomotion distance, session 80.71.02.2-0.61.5-0.6
Degree of sensitization distance0.60.61.5-0.41.2-0.2
Degree of sensitization stereotypy1.61.72.21.1-1.51.4
Conditioned locomotion0.10.20.50.7-0.1-0.1
Cocaine response after cond. corrected2.42.73.9-1.22.0-1.7
Cocaine response after cond. not corrected1.51.72.4-0.91.6-1.3
Cocaine response before conditioning1.31.62.50.8-1.61.3
Saline control response1.11.43.71.9-0.4-0.7
Bone: connectivity density0.61.02.71.7-0.30.3
Bone: cortical apparent density0.30.40.70.6-0.90.0
Bone: cortical area0.81.21.61.2-1.01.1
Bone: cortical porosity0.10.10.2-0.2-0.50.3
Bone: cortical porosity0.10.10.30.1-0.60.1
Bone: cortical thickness1.52.55.62.4-1.3-0.4
Bone: cortical thickness0.40.51.00.70.1-1.0
Bone: cortical tissue density0.40.50.90.7-0.90.0
Condit. Reinf. active minus inactive responses0.60.71.41.2-0.70.3
Condit. Reinf. active-inactive response ratio0.20.20.40.6-0.6-0.1
Condit. Reinf. active responses0.91.11.51.2-0.91.1
Condit. Reinf. inactive responses0.50.61.70.2-0.31.3
Incentive salience index mean0.60.82.11.4-0.40.2
Condit. Reinf. lever presses0.40.51.61.3-0.10.2
Condit. Reinf. active minus inactive responses0.70.91.7-0.5-0.91.3
Condit. Reinf. active-inactive response ratio1.81.94.3-0.8-0.92.1
Condit. Reinf. active responses0.10.20.30.1-0.50.5
Condit. Reinf. inactive responses0.70.92.10.50.6-1.4
Condit. Reinf. lever presses1.01.41.61.3-1.21.0
Condit. Reinf. lever reinforcers received0.40.50.80.4-0.90.7
Conditioned reinforcement - actives1.51.52.2-1.5-0.51.5
Conditioned reinforcement - inactives0.91.01.9-1.0-0.11.4
Conditioned locomotion1.21.53.1-1.81.10.4
Patch foraging indifference point 0 sec0.10.20.50.7-0.2-0.1
Patch foraging indifference point AUC4.14.76.11.9-2.52.1
Delay disc. indifference point, 0s delay1.92.14.2-0.62.0-1.4
Delay disc. indifference point, 16s delay0.10.10.10.30.10.4
Delay disc. indifference point, 2s delay0.30.40.8-0.50.9-0.1
Delay disc. indifference point, 24s delay0.60.61.10.10.8-1.1
Delay disc. indifference point, 4s delay1.41.52.20.31.4-1.5
Delay disc. indifference point, 8s delay1.31.31.8-0.71.3-1.3
Indifference point function ln k8.211.415.8-2.74.0-3.3
Indifference point function log k8.211.415.8-2.74.0-3.3
Patch foraging total patch changes 0 sec0.20.30.60.7-0.0-0.6
Patch foraging total patch changes 12 sec4.15.38.32.9-2.41.3
Patch foraging total patch changes 18 sec0.91.11.70.9-1.30.9
Patch foraging total patch changes 24 sec3.23.99.53.1-1.40.5
Patch foraging total patch changes 6 sec0.30.51.41.2-0.2-0.1
Patch foraging time to switch 0 sec0.40.61.20.6-0.41.1
Patch foraging water rate 0 sec0.40.60.8-0.90.6-0.9
Patch foraging water rate 12 sec3.24.96.3-1.72.4-2.5
Patch foraging water rate 18 sec3.85.17.7-0.92.6-2.8
Patch foraging water rate 24 sec1.72.42.7-1.41.6-1.6
Patch foraging water rate 6 sec2.43.54.9-1.22.1-2.2
Seeking ratio, delayed vs. immediate footshock0.10.10.10.20.3-0.4
Distance traveled before self-admin2.42.53.01.7-1.71.3
Distance traveled after self-admin0.91.01.60.7-1.30.9
Extensor digitorum longus weight2.811.229.85.5-1.90.2
Bone: elastic displacement0.70.81.3-0.80.7-1.1
Bone: elastic work0.70.91.60.90.4-1.3
Bone: endosteal estimation0.92.02.6-1.61.60.8
Bone: endosteal perimeter1.32.73.7-1.81.01.9
Epididymis fat weight0.30.71.8-0.51.3-0.1
Delta time in closed arm before/after self-admin3.13.05.51.01.6-2.3
Delta time in open arm before/after self-admin3.23.14.21.3-2.01.9
Diff in mean of infusions in LGA sessions1.41.52.41.4-1.60.4
Delay discount exponential model param0.40.50.90.1-1.00.7
Extinction: sum of active levers before priming2.62.64.42.1-1.60.9
Active lever presses in extinction session 63.83.75.61.7-2.41.6
Bone: final force0.91.53.51.9-0.80.7
Bone: final moment1.01.63.51.9-0.80.7
Food consumed during 24 hour testing period0.20.20.3-0.1-0.60.6
Glucose1.52.24.0-2.01.60.1
Heart weight1.92.84.4-1.42.1-1.4
Delay discount hyperbolic model param0.50.51.00.0-1.00.7
Intermittent access intake day 1-15 change1.91.93.0-0.9-1.41.7
Intermittent access intake escalation1.51.42.3-0.6-1.31.5
Intermittent access intake escalation 22.02.03.10.1-1.71.7
Intermitt. access day 1 inactive lever presses0.91.02.3-1.50.70.4
Intermitt. access day 15 inactive lever presses0.60.71.80.4-0.31.3
Intermitt. access escalation Index1.81.62.5-0.31.6-1.5
Intermittent access day 1 total infusions1.61.94.4-1.12.1-0.0
Intermittent access day 15 total infusions1.71.93.7-1.90.71.3
Intermittent access terminal intake (last 3 days)1.11.22.9-0.80.21.7
Intermittent access total infusions0.80.91.1-1.00.81.0
Intermittent access day 1 locomotion2.12.25.7-0.52.4-0.8
Intermittent access day 15 total locomotion0.40.40.8-0.50.50.9
Intermittent access total locomotion0.80.91.4-0.41.11.2
Intermittent access standard deviation1.01.11.5-1.2-0.71.1
Left kidney weight0.10.20.50.3-0.10.7
Right kidney weight0.41.12.20.8-0.81.5
Cocaine induced anxiety0.60.71.00.5-0.91.0
Post-drug Anxiety1.71.92.60.8-1.61.5
Baseline Anxiety0.50.61.21.1-0.6-0.3
Tail length0.51.42.81.7-1.0-0.7
Length with tail1.13.99.73.1-1.4-0.0
Length without tail1.02.35.82.4-0.90.4
Times rat made contact with spout0.30.30.80.30.1-0.9
Lifetime Intake0.80.91.7-1.01.30.3
Liver weight, left0.30.50.6-0.80.8-0.6
Liver weight, right0.50.81.70.21.3-0.9
Locomotor activity2.03.24.9-1.31.7-2.2
Locomotor testing distance3.25.48.5-1.22.5-2.9
Locomotor testing rearing1.82.83.7-1.21.8-1.9
Locomotion in novel chamber1.11.42.1-1.40.21.4
Locomotion in novel chamber post-restriction1.11.33.4-1.90.60.4
Fecal boli incidents, locomotor time 11.51.63.3-0.4-1.21.8
Change in fecal boli incidents, locomotor task3.43.24.8-0.92.2-2.0
Time >=10cm from walls, locomotor time 11.41.42.3-1.40.11.5
Bouts of movement, locomotor time 11.71.84.50.5-2.10.9
Total resting periods, locomotor time 11.71.94.20.5-2.01.1
Rest time, locomotor task time 10.50.61.7-1.30.10.0
Distance moved, locomotor task time 10.10.10.20.50.2-0.1
Vertical activity count, locomotor time 10.40.50.8-0.90.8-0.3
Time >=10cm from walls, locomotor time 21.21.32.1-0.2-1.31.4
Bouts of movement, locomotor time 20.91.01.91.4-1.00.2
Total resting periods, locomotor time 20.50.61.01.0-0.80.2
Rest time, locomotor task time 21.71.94.2-2.11.2-0.3
Distance moved, locomotor task time 20.50.61.20.8-1.10.3
Vertical activity count, locomotor time 20.30.31.0-0.20.1-1.0
Light reinforcement 10.00.00.1-0.1-0.3-0.1
Light reinforcement 21.72.35.30.1-1.22.3
Bone: marrow area1.02.23.0-1.71.70.8
Bone: maximum diameter0.61.22.70.5-0.81.6
Bone: maximum force1.42.34.82.2-0.81.3
Bone: maximum moment1.32.24.62.2-0.71.2
Mean time between licks in bursts1.62.34.70.81.2-2.2
Mean num. licks in bursts0.10.20.4-0.30.2-0.6
Cd content in liver0.70.71.9-1.40.00.5
Co content in liver2.12.43.6-1.61.1-1.9
Cu content in liver0.30.41.00.40.2-1.0
Fe content in liver0.10.10.3-0.1-0.40.5
K content in liver0.60.61.41.2-0.20.6
Mg content in liver0.20.20.40.70.40.2
Mn content in liver1.92.23.51.9-1.51.0
Na content in liver0.80.81.00.8-0.81.0
Rb content in liver1.62.02.9-1.31.7-1.1
Se content in liver1.82.23.80.6-1.52.0
Sr content in liver3.93.66.22.5-1.90.9
Zn content in liver2.22.54.52.1-1.31.1
Bone: minimum diameter0.61.01.2-0.91.11.1
Time in familiar zone, hab. session 10.10.10.20.40.4-0.2
Time in novel zone, hab. session 11.11.11.8-1.30.9-0.9
Total zone transitions, hab. session 10.10.10.20.4-0.3-0.1
Total locomotion distance, hab. session 10.10.20.2-0.40.50.5
Locomotion velocity, hab. session 10.10.10.30.2-0.00.6
Time in familiar zone, hab. session 20.50.51.3-0.20.6-1.1
Time in novel zone, hab. session 20.10.10.20.4-0.10.3
Total zone transitions, hab. session 20.81.02.21.50.5-0.8
Total locomotion distance, hab. session 20.30.40.90.41.0-0.5
Locomotion velocity, hab. session 20.20.30.70.20.9-0.2
Novel to familiar place preference ratio1.81.92.41.5-1.41.2
Novelty place preference1.41.41.51.2-1.21.1
Time in novel zone, NPP test1.11.11.51.2-1.10.9
Total zone transitions, NPP test0.40.61.41.2-0.0-0.6
Total locomotion distance, NPP test0.30.40.80.10.9-0.7
Locomotion velocity, NPP test0.20.20.4-0.00.6-0.5
Intraocular pressure0.40.61.4-0.2-1.20.6
Delta distance traveled before/after self-admin0.60.70.8-0.80.8-0.9
Delta ambulatory time before/after self-admin1.11.21.4-1.11.0-1.2
Parametrial fat weight0.91.83.0-1.71.40.6
Pavlov. Cond. lever latency0.60.71.8-1.40.3-0.5
Pavlov. Cond. magazine entry latency1.21.51.91.4-0.91.3
Pavlov. Cond. change in total contacts1.51.63.10.6-1.21.8
Pavlov. Cond. index score0.81.11.21.0-1.01.1
Pavlov. Cond. latency score0.40.50.90.9-0.50.7
Pavlov. Cond. lever contacts0.20.20.50.7-0.00.3
Pavlov. Cond. magazine entry number1.62.02.7-1.01.6-1.5
Pavlov. Cond. intertrial magazine entries0.91.01.90.1-1.41.1
Pavlov. Cond. lever-magazine prob. diff.1.11.41.61.2-1.11.3
Pavlov. Cond. response bias1.21.41.71.1-1.21.3
Pavlov. Cond. lever latency0.30.40.8-0.90.5-0.5
Pavlov. Cond. magazine entry latency2.83.35.72.4-1.90.8
Pavlov. Cond. change in total contacts2.43.34.11.6-2.01.8
Pavlov. Cond. index score2.53.24.12.0-1.91.4
Pavlov. Cond. latency score2.22.83.61.9-1.71.4
Pavlov. Cond. lever contacts0.50.71.00.8-1.00.7
Pavlov. Cond. magazine entry number5.06.110.1-3.22.5-1.4
Pavlov. Cond. intertrial magazine entries0.60.82.2-1.50.30.3
Pavlov. Cond. lever-magazine prob. diff.2.63.34.72.2-1.91.3
Pavlov. Cond. response bias1.41.92.71.7-1.50.9
Time in closed arm before self-admin0.70.81.80.1-0.91.3
Time in closed arm after self-admin1.11.21.8-0.81.4-1.0
Time in open arm before self-admin4.34.77.6-1.12.3-2.8
Time in open arm after self-admin0.10.10.20.1-0.4-0.3
Bone: periosteal estimation0.40.82.2-0.10.21.5
Bone: periosteal perimeter0.50.92.60.1-0.31.6
Bone: post-yield work1.01.44.0-0.50.22.0
Progressive ratio test 1 active lever presses1.21.23.1-1.80.60.3
Progressive ratio test 1 breakpoint1.31.33.4-1.90.60.4
Progressive ratio test 1 inactive lever presses0.40.40.7-0.00.9-0.7
Progressive ratio test 2 active lever presses1.11.22.3-1.50.41.1
Progressive ratio test 2 breakpoint1.51.73.7-1.90.41.1
Progressive ratio test 2 inactive lever presses0.70.81.4-1.00.41.2
Incentive Sensitization - Responses0.50.51.20.2-0.41.1
Incentive Sensitization - Breakpoint0.50.51.30.1-0.31.2
Sum of active levers in priming session hrs 5-66.36.110.01.2-3.22.6
Progressive ratio0.20.20.50.4-0.20.7
Food seeking constrained by brief footshock0.50.61.1-0.30.8-1.0
Seeking ratio, punishment vs. effort1.21.42.8-0.61.1-1.7
Retroperitoneal fat weight1.75.78.5-2.92.8-0.7
Reaction time number correct0.40.51.01.0-0.2-0.8
Reaction time mean minus median3.24.36.50.6-2.52.4
Reaction time mean minus median AUC1.62.14.00.4-2.01.5
Reaction time num false alarms1.82.44.4-0.81.5-2.1
Reaction time num false alarms AUC1.42.04.5-0.41.1-2.1
Reaction time trials correct on left0.40.51.01.0-0.2-0.8
Reaction time trials on left0.40.51.01.0-0.3-0.8
Reaction time mean1.21.62.4-0.2-1.51.6
Reaction time mean AUC1.11.52.4-0.2-1.51.5
Median of all reaction times0.50.71.1-0.1-1.01.1
Reaction time omissions0.30.41.1-0.0-1.10.3
Reaction time false alarm rate1.11.62.3-0.91.3-1.5
Reaction time premature initiation rate2.33.16.92.60.4-1.5
Reaction time premature initiations2.94.19.33.1-0.0-1.7
Std. dev. reaction times1.72.44.1-0.2-2.01.8
Reaction time trials completed0.40.51.01.0-0.3-0.8
Reaction time trials AUC0.30.50.80.9-0.0-0.9
Run reversals in cocaine runway, females3.02.94.10.82.0-2.0
Run reversals in cocaine runway, males0.30.30.7-0.80.3-0.3
Latency to leave start box in cocaine runway0.40.40.9-0.60.90.1
Latency to leave start box in cocaine runway, F0.00.00.10.00.10.3
Latency to leave start box in cocaine runway, M1.81.73.5-1.91.3-0.1
Std. dev. time between licks in bursts1.72.03.4-0.51.5-1.9
Total sessions with >9 infusions1.92.14.3-1.32.1-0.8
Short access day 1 total inactive lever presses1.41.53.0-1.11.7-0.7
Short access day 10 total inactive lever presses2.93.23.9-1.82.0-1.6
Short access day 1 total infusions1.41.53.1-0.91.8-0.8
Short access day 10 total infusions1.01.13.1-0.51.8-0.3
Short access total infusions1.51.63.7-0.71.9-0.8
Short access day 1 locomotion1.01.12.70.21.6-0.7
Short access day 10 total locomotion0.40.51.40.11.2-0.2
Short access total locomotion0.91.02.50.41.6-0.6
One hour access (0.3 mA shock)1.92.24.6-2.11.20.7
Compulsive drug intake2.12.24.91.20.4-2.2
One hour access (shock baseline)3.23.76.4-2.50.12.2
Social response proportion0.10.10.20.40.1-0.4
Social responses0.10.10.20.2-0.3-0.5
Social time0.10.20.50.10.0-0.7
Soleus weight1.64.79.0-3.02.1-0.9
Bone: stiffness1.11.72.51.2-1.11.6
Tibialis anterior weight5.117.338.46.2-3.51.3
Time to tail flick, vehicle, before self-admin0.30.30.50.70.10.6
Time to tail flick, vehicle, after self-admin0.70.81.00.51.0-1.0
Time to tail flick, test, before self-admin1.61.53.00.51.7-1.2
Time to tail flick, test, after self-admin0.00.00.1-0.3-0.00.0
Delta time to tail flick, vehicle, before/after SA0.40.40.8-0.10.6-0.9
Delta time to tail flick, test, before/after SA1.61.43.2-0.1-1.81.1
Tibia length2.57.18.92.1-2.83.0
Ambulatory time before self-admin3.63.74.81.6-2.21.9
Ambulatory time after self-admin0.91.01.60.6-1.11.3
Bone: tissue strength0.00.00.1-0.10.0-0.2
Total heroin consumption2.83.34.82.2-2.20.7
Bone: trabecular number0.30.51.11.0-0.40.6
Bone: trabecular spacing0.60.71.5-0.60.6-1.2
Bone: trabecular thickness0.50.51.3-0.4-0.41.1
Bone: trabecular tissue density1.92.77.3-2.70.8-0.4
Water consumed over 24 hours0.30.40.80.9-0.4-0.4
Number of responses in last shaping day0.70.71.4-0.10.9-1.2