Shisa8

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression Shisa8 0.11 0.06 4.8e-11 0.12 0.11 0.12 0.12 4.2e-11 1.1e-10 4.4e-11 3.0e-11
2 NAcc gene expression Shisa8 0.21 0.1 0.0e+00 0.11 0.09 0.12 0.11 7.0e-16 4.5e-14 7.0e-18 2.7e-16
3 Brain mRNA stability Shisa8 0.4 0.1 0.0e+00 0.28 0.35 0.35 0.36 1.0e-25 1.6e-33 1.6e-33 1.2e-34

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density0.30.50.6-0.8-0.80.6
Area under the delay curve0.20.20.5-0.2-0.10.7
BMI with tail0.72.54.02.01.6-1.1
BMI without tail0.10.20.40.20.4-0.6
Body weight0.94.15.22.32.0-1.8
Weight adjusted by age0.60.81.7-0.10.9-1.3
Bone surface0.20.40.6-0.8-0.1-0.7
Bone volume0.10.10.2-0.30.1-0.5
Breakpoint value in progressive ratio session0.30.30.6-0.0-0.80.6
Number of licking bursts0.30.50.7-0.8-0.90.5
Context. condit. distance diff. score7.89.411.03.13.3-2.7
Locomotion velocity, session 10.50.51.5-0.10.4-1.2
Locomotion distance, session 11.72.13.9-2.0-1.50.5
Locomotion velocity, session 20.60.81.00.60.9-1.0
Locomotion distance, session 23.34.65.8-2.0-2.42.1
Locomotion velocity, session 31.11.22.30.41.1-1.5
Locomotion distance, session 30.60.61.7-1.3-0.4-0.1
Stereotopy head waving bouts, day 31.01.21.21.11.1-1.1
Stereotopy head waving duration, day 34.85.86.22.32.5-2.4
Locomotion velocity, session 70.30.40.50.30.7-0.7
Locomotion distance, session 70.30.41.1-0.2-0.31.0
Stereotopy head waving bouts, day 75.56.210.31.52.5-3.2
Stereotopy head waving duration, day 74.25.18.11.42.3-2.8
Locomotion velocity, session 82.42.93.41.81.6-1.6
Locomotion distance, session 81.31.92.21.31.5-1.4
Degree of sensitization distance1.41.43.61.90.80.3
Degree of sensitization stereotypy3.84.27.21.22.0-2.7
Conditioned locomotion1.51.72.61.01.6-1.3
Cocaine response after cond. corrected0.10.10.20.20.4-0.5
Cocaine response after cond. not corrected0.30.30.50.30.7-0.7
Cocaine response before conditioning0.00.00.00.00.2-0.2
Saline control response1.21.62.30.71.4-1.5
Bone: connectivity density0.10.20.2-0.5-0.50.3
Bone: cortical apparent density0.81.01.3-1.1-1.00.9
Bone: cortical area1.52.32.71.61.5-1.4
Bone: cortical porosity0.50.50.70.70.8-0.6
Bone: cortical porosity2.12.22.71.41.6-1.5
Bone: cortical thickness0.20.30.50.7-0.10.7
Bone: cortical thickness0.30.40.60.7-0.10.8
Bone: cortical tissue density0.71.01.1-1.1-1.00.9
Condit. Reinf. active minus inactive responses0.20.20.4-0.3-0.40.7
Condit. Reinf. active-inactive response ratio0.40.40.50.60.7-0.5
Condit. Reinf. active responses1.01.31.7-1.1-1.01.3
Condit. Reinf. inactive responses2.12.62.7-1.6-1.51.6
Incentive salience index mean0.60.71.3-0.6-0.71.1
Condit. Reinf. lever presses0.60.91.2-0.9-0.81.1
Condit. Reinf. active minus inactive responses0.40.60.8-0.1-0.90.9
Condit. Reinf. active-inactive response ratio0.60.71.1-0.0-1.11.0
Condit. Reinf. active responses0.20.20.60.80.3-0.2
Condit. Reinf. inactive responses1.31.72.31.31.5-1.2
Condit. Reinf. lever presses0.60.81.2-0.7-1.10.9
Condit. Reinf. lever reinforcers received0.10.10.20.5-0.00.1
Conditioned reinforcement - actives0.20.40.70.80.7-0.2
Conditioned reinforcement - inactives0.60.91.80.3-0.81.4
Conditioned locomotion1.01.32.71.61.0-0.3
Patch foraging indifference point 0 sec0.51.01.3-0.8-1.21.0
Patch foraging indifference point AUC0.20.30.5-0.7-0.50.3
Delay disc. indifference point, 0s delay1.21.31.71.31.3-0.8
Delay disc. indifference point, 16s delay1.21.31.4-1.2-1.11.1
Delay disc. indifference point, 2s delay0.20.20.40.40.60.2
Delay disc. indifference point, 24s delay0.10.10.3-0.5-0.20.0
Delay disc. indifference point, 4s delay0.20.20.70.2-0.00.8
Delay disc. indifference point, 8s delay0.70.81.6-0.7-0.71.3
Indifference point function ln k0.71.11.31.01.1-1.1
Indifference point function log k0.71.11.31.01.1-1.1
Patch foraging total patch changes 0 sec0.71.31.6-1.0-1.31.1
Patch foraging total patch changes 12 sec0.00.00.10.1-0.30.0
Patch foraging total patch changes 18 sec0.30.50.8-0.4-0.70.9
Patch foraging total patch changes 24 sec0.20.30.5-0.7-0.40.4
Patch foraging total patch changes 6 sec0.30.40.7-0.4-0.90.6
Patch foraging time to switch 0 sec0.00.10.1-0.00.3-0.3
Patch foraging water rate 0 sec0.30.61.0-0.3-1.00.8
Patch foraging water rate 12 sec0.30.71.2-0.9-1.10.2
Patch foraging water rate 18 sec1.42.24.0-1.5-2.00.7
Patch foraging water rate 24 sec0.10.20.6-0.1-0.80.1
Patch foraging water rate 6 sec0.50.71.6-1.3-0.6-0.0
Seeking ratio, delayed vs. immediate footshock4.55.56.3-2.1-2.52.4
Distance traveled before self-admin1.21.53.2-0.1-1.11.8
Distance traveled after self-admin0.30.30.60.0-0.70.7
Extensor digitorum longus weight0.10.20.5-0.7-0.50.0
Bone: elastic displacement0.40.51.20.10.4-1.1
Bone: elastic work2.02.62.81.71.5-1.7
Bone: endosteal estimation2.04.58.01.12.1-2.8
Bone: endosteal perimeter3.57.511.31.72.9-3.4
Epididymis fat weight2.17.19.73.12.9-1.8
Delta time in closed arm before/after self-admin0.20.20.40.60.40.3
Delta time in open arm before/after self-admin0.30.30.8-0.30.1-0.9
Diff in mean of infusions in LGA sessions0.00.00.00.20.10.0
Delay discount exponential model param0.20.20.50.20.1-0.7
Extinction: sum of active levers before priming0.60.61.01.00.7-0.6
Active lever presses in extinction session 60.30.30.30.60.5-0.5
Bone: final force0.81.22.21.51.0-0.6
Bone: final moment0.91.42.51.61.1-0.8
Food consumed during 24 hour testing period0.81.12.41.50.7-0.6
Glucose0.10.10.3-0.0-0.10.5
Heart weight7.611.715.53.93.3-2.9
Delay discount hyperbolic model param0.10.10.40.1-0.1-0.6
Intermittent access intake day 1-15 change0.30.50.8-0.6-0.70.9
Intermittent access intake escalation0.30.50.6-0.8-0.70.8
Intermittent access intake escalation 20.50.50.7-0.8-0.60.7
Intermitt. access day 1 inactive lever presses0.20.81.41.0-0.41.2
Intermitt. access day 15 inactive lever presses0.91.83.50.7-1.11.9
Intermitt. access escalation Index0.20.30.4-0.4-0.50.6
Intermittent access day 1 total infusions0.30.51.21.10.40.1
Intermittent access day 15 total infusions0.10.10.2-0.1-0.20.4
Intermittent access terminal intake (last 3 days)0.00.00.00.00.20.1
Intermittent access total infusions0.10.10.30.50.30.2
Intermittent access day 1 locomotion0.20.30.60.5-0.20.8
Intermittent access day 15 total locomotion0.00.10.10.30.10.3
Intermittent access total locomotion0.10.10.20.50.00.5
Intermittent access standard deviation0.20.40.80.90.20.6
Left kidney weight10.448.262.37.96.8-6.0
Right kidney weight10.146.068.38.36.5-5.2
Cocaine induced anxiety0.20.30.30.5-0.50.5
Post-drug Anxiety0.30.40.6-0.5-0.80.5
Baseline Anxiety0.50.61.7-1.3-0.3-0.0
Tail length0.21.02.3-1.5-0.7-0.3
Length with tail0.31.12.00.61.0-1.4
Length without tail1.23.96.22.51.8-1.5
Times rat made contact with spout0.40.40.90.90.6-0.2
Lifetime Intake0.40.51.11.10.20.5
Liver weight, left2.43.95.41.22.3-2.2
Liver weight, right4.17.19.02.03.0-2.9
Locomotor activity2.03.24.01.61.7-2.0
Locomotor testing distance0.10.10.2-0.4-0.20.2
Locomotor testing rearing1.42.94.01.62.0-1.5
Locomotion in novel chamber0.60.81.6-0.30.8-1.3
Locomotion in novel chamber post-restriction0.40.61.4-1.2-0.40.5
Fecal boli incidents, locomotor time 10.10.20.3-0.5-0.50.3
Change in fecal boli incidents, locomotor task0.80.81.40.50.9-1.2
Time >=10cm from walls, locomotor time 10.00.00.10.30.2-0.1
Bouts of movement, locomotor time 10.10.10.10.30.30.2
Total resting periods, locomotor time 10.20.30.80.2-0.10.9
Rest time, locomotor task time 10.60.71.20.90.21.1
Distance moved, locomotor task time 11.11.72.70.71.3-1.6
Vertical activity count, locomotor time 10.00.10.3-0.10.1-0.5
Time >=10cm from walls, locomotor time 20.00.10.2-0.4-0.00.1
Bouts of movement, locomotor time 20.20.30.50.7-0.10.7
Total resting periods, locomotor time 20.20.40.80.6-0.30.9
Rest time, locomotor task time 20.40.51.1-0.2-0.61.0
Distance moved, locomotor task time 21.82.22.81.11.7-1.6
Vertical activity count, locomotor time 20.50.61.00.50.8-1.0
Light reinforcement 10.41.01.90.31.0-1.4
Light reinforcement 21.01.51.91.21.4-1.0
Bone: marrow area2.14.78.21.22.1-2.9
Bone: maximum diameter4.38.18.32.82.9-2.8
Bone: maximum force1.52.64.32.11.6-1.0
Bone: maximum moment1.83.14.92.21.7-1.2
Mean time between licks in bursts0.30.60.8-0.9-0.70.8
Mean num. licks in bursts1.32.02.61.61.6-1.0
Cd content in liver1.01.11.51.21.1-0.8
Co content in liver0.20.30.50.1-0.50.7
Cu content in liver5.36.39.4-3.1-2.51.8
Fe content in liver0.91.11.40.91.0-1.2
K content in liver0.90.91.2-1.1-1.00.7
Mg content in liver1.51.51.9-1.1-1.31.4
Mn content in liver0.20.20.40.10.5-0.6
Na content in liver2.02.13.0-1.7-1.51.0
Rb content in liver0.00.10.10.3-0.10.2
Se content in liver0.30.30.8-0.9-0.4-0.1
Sr content in liver2.32.02.2-1.4-1.51.4
Zn content in liver0.10.10.1-0.30.1-0.3
Bone: minimum diameter1.01.82.80.81.4-1.7
Time in familiar zone, hab. session 10.10.10.20.10.3-0.5
Time in novel zone, hab. session 10.70.70.90.80.8-0.9
Total zone transitions, hab. session 12.23.05.7-2.4-1.60.8
Total locomotion distance, hab. session 10.81.12.7-1.6-0.4-0.8
Locomotion velocity, hab. session 10.91.33.2-1.8-0.7-0.2
Time in familiar zone, hab. session 20.50.50.90.00.8-0.9
Time in novel zone, hab. session 20.20.20.30.2-0.50.4
Total zone transitions, hab. session 20.60.71.0-0.9-1.00.6
Total locomotion distance, hab. session 20.50.60.8-0.9-0.90.5
Locomotion velocity, hab. session 20.91.21.7-1.3-1.20.7
Novel to familiar place preference ratio2.52.84.01.41.6-2.0
Novelty place preference3.63.95.31.61.9-2.3
Time in novel zone, NPP test4.54.86.31.92.1-2.5
Total zone transitions, NPP test1.92.74.7-2.2-1.70.7
Total locomotion distance, NPP test1.11.42.3-1.5-1.30.6
Locomotion velocity, NPP test1.52.23.7-1.9-1.50.8
Intraocular pressure0.20.30.30.40.6-0.6
Delta distance traveled before/after self-admin1.71.83.30.71.2-1.8
Delta ambulatory time before/after self-admin1.82.24.10.81.4-2.0
Parametrial fat weight0.20.40.80.10.9-0.7
Pavlov. Cond. lever latency0.50.61.00.60.7-1.0
Pavlov. Cond. magazine entry latency1.11.42.4-0.7-1.11.5
Pavlov. Cond. change in total contacts1.81.93.4-0.8-1.31.8
Pavlov. Cond. index score0.91.12.4-0.3-0.91.6
Pavlov. Cond. latency score0.70.92.0-0.3-0.81.4
Pavlov. Cond. lever contacts1.82.13.0-1.2-1.41.7
Pavlov. Cond. magazine entry number1.31.73.30.71.2-1.8
Pavlov. Cond. intertrial magazine entries1.21.41.7-1.2-1.31.0
Pavlov. Cond. lever-magazine prob. diff.1.01.22.6-0.5-0.91.6
Pavlov. Cond. response bias1.41.83.3-0.8-1.11.8
Pavlov. Cond. lever latency1.11.42.30.91.5-1.1
Pavlov. Cond. magazine entry latency6.98.410.8-2.3-3.33.0
Pavlov. Cond. change in total contacts1.52.53.6-0.7-1.91.8
Pavlov. Cond. index score3.64.96.6-1.7-2.62.3
Pavlov. Cond. latency score4.56.08.1-1.9-2.82.5
Pavlov. Cond. lever contacts1.31.72.7-1.1-1.61.1
Pavlov. Cond. magazine entry number4.65.77.41.92.7-2.5
Pavlov. Cond. intertrial magazine entries1.92.85.42.31.6-0.7
Pavlov. Cond. lever-magazine prob. diff.3.85.16.8-1.8-2.62.3
Pavlov. Cond. response bias2.02.84.2-1.3-2.01.6
Time in closed arm before self-admin3.64.56.7-2.6-2.11.5
Time in closed arm after self-admin0.20.20.50.10.7-0.2
Time in open arm before self-admin0.10.10.1-0.40.3-0.1
Time in open arm after self-admin0.30.30.5-0.7-0.0-0.7
Bone: periosteal estimation2.45.17.41.62.3-2.7
Bone: periosteal perimeter5.59.511.62.53.2-3.4
Bone: post-yield work0.10.20.40.60.10.2
Progressive ratio test 1 active lever presses0.30.30.70.5-0.30.8
Progressive ratio test 1 breakpoint0.20.30.60.4-0.30.8
Progressive ratio test 1 inactive lever presses1.21.73.31.2-0.61.8
Progressive ratio test 2 active lever presses0.40.51.00.3-0.51.0
Progressive ratio test 2 breakpoint0.40.40.90.2-0.51.0
Progressive ratio test 2 inactive lever presses1.22.03.7-0.5-1.51.9
Incentive Sensitization - Responses0.20.20.5-0.2-0.50.7
Incentive Sensitization - Breakpoint0.20.20.5-0.0-0.40.7
Sum of active levers in priming session hrs 5-60.00.00.1-0.00.2-0.3
Progressive ratio0.20.30.5-0.2-0.60.7
Food seeking constrained by brief footshock1.01.22.01.41.0-0.8
Seeking ratio, punishment vs. effort0.50.71.01.00.9-0.6
Retroperitoneal fat weight3.615.419.34.44.2-3.1
Reaction time number correct0.50.92.3-1.5-0.6-0.0
Reaction time mean minus median0.20.60.80.70.7-0.9
Reaction time mean minus median AUC0.51.21.31.21.1-1.0
Reaction time num false alarms0.50.81.70.10.8-1.3
Reaction time num false alarms AUC0.50.71.8-0.10.6-1.3
Reaction time trials correct on left0.50.92.3-1.5-0.6-0.0
Reaction time trials on left0.50.92.4-1.5-0.6-0.1
Reaction time mean0.20.30.6-0.3-0.80.5
Reaction time mean AUC0.20.30.5-0.3-0.70.5
Median of all reaction times0.60.91.4-0.7-1.20.9
Reaction time omissions0.10.10.2-0.4-0.0-0.5
Reaction time false alarm rate0.50.70.90.70.8-0.9
Reaction time premature initiation rate0.50.71.1-0.3-1.10.9
Reaction time premature initiations0.40.81.2-0.8-1.10.8
Std. dev. reaction times0.40.70.90.80.8-1.0
Reaction time trials completed0.50.92.4-1.5-0.6-0.1
Reaction time trials AUC0.40.71.9-1.4-0.5-0.1
Run reversals in cocaine runway, females0.30.30.3-0.50.5-0.6
Run reversals in cocaine runway, males1.41.42.70.71.0-1.6
Latency to leave start box in cocaine runway0.10.10.10.30.30.0
Latency to leave start box in cocaine runway, F0.10.10.2-0.4-0.20.1
Latency to leave start box in cocaine runway, M0.50.51.01.00.6-0.1
Std. dev. time between licks in bursts1.72.22.8-1.4-1.71.4
Total sessions with >9 infusions2.73.37.92.81.4-0.2
Short access day 1 total inactive lever presses0.70.92.61.60.40.0
Short access day 10 total inactive lever presses0.41.01.41.20.9-0.8
Short access day 1 total infusions1.31.74.12.00.9-0.2
Short access day 10 total infusions0.70.92.21.50.70.2
Short access total infusions1.41.84.82.20.70.5
Short access day 1 locomotion0.50.61.51.20.70.1
Short access day 10 total locomotion0.30.61.50.2-0.41.2
Short access total locomotion0.70.81.91.40.50.5
One hour access (0.3 mA shock)0.40.51.0-0.3-0.61.0
Compulsive drug intake0.60.81.4-0.5-1.20.8
One hour access (shock baseline)0.00.10.2-0.10.10.4
Social response proportion0.10.10.20.3-0.20.4
Social responses0.10.20.4-0.30.2-0.6
Social time1.72.32.5-1.4-1.61.5
Soleus weight0.10.30.4-0.2-0.60.6
Bone: stiffness1.01.62.51.61.3-0.8
Tibialis anterior weight1.13.64.6-1.6-2.11.9
Time to tail flick, vehicle, before self-admin0.20.20.40.20.2-0.7
Time to tail flick, vehicle, after self-admin0.50.71.3-1.1-0.3-0.8
Time to tail flick, test, before self-admin1.01.01.50.91.2-1.0
Time to tail flick, test, after self-admin0.10.10.4-0.60.2-0.1
Delta time to tail flick, vehicle, before/after SA0.00.00.1-0.0-0.20.0
Delta time to tail flick, test, before/after SA1.71.82.8-1.7-1.30.9
Tibia length0.61.62.01.41.1-1.3
Ambulatory time before self-admin0.50.71.4-0.1-0.81.2
Ambulatory time after self-admin0.50.60.9-0.9-1.00.4
Bone: tissue strength0.20.20.40.20.3-0.6
Total heroin consumption0.10.10.40.6-0.10.1
Bone: trabecular number0.10.10.2-0.30.3-0.4
Bone: trabecular spacing0.70.92.11.40.7-0.3
Bone: trabecular thickness0.20.20.3-0.5-0.40.3
Bone: trabecular tissue density2.43.54.5-1.7-2.11.8
Water consumed over 24 hours0.30.40.70.80.3-0.6
Number of responses in last shaping day2.52.75.9-0.2-1.52.4