Serpine3

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain gene expression Serpine3 0.06 0.03 1.9e-07 0.07 0.07 0.08 0.08 1.9e-07 2.2e-07 1.2e-07 8.5e-08
2 NAcc gene expression Serpine3 0.03 0.02 3.0e-03 0.02 0.01 0.01 0.01 1.6e-03 6.9e-03 1.0e-02 9.0e-03
3 IC mRNA stability Serpine3 0.06 0.04 6.1e-03 0.04 0.03 0.03 0.04 6.5e-03 3.2e-02 3.2e-02 1.2e-02
4 PL gene expression Serpine3 0.03 0.02 1.5e-03 -0 0.02 0 0 6.7e-01 4.9e-03 1.3e-01 1.6e-01

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.10.20.40.6-0.4-0.7-0.1
Area under the delay curve2.64.15.1-2.31.91.9-2.0
BMI with tail0.93.15.0-1.91.72.2-0.8
BMI without tail0.10.30.4-0.60.60.50.4
Body weight1.46.26.6-2.62.62.4-2.4
Weight adjusted by age0.82.22.7-1.51.41.4-1.6
Bone surface0.20.50.80.8-0.6-0.9-0.3
Bone volume0.10.30.70.5-0.3-0.8-0.3
Breakpoint value in progressive ratio session0.20.40.8-0.40.60.7-0.9
Number of licking bursts0.10.20.3-0.50.50.40.4
Context. condit. distance diff. score0.40.51.70.1-0.2-0.51.3
Locomotion velocity, session 11.31.51.9-1.21.11.2-1.4
Locomotion distance, session 11.31.72.5-1.31.31.0-1.6
Locomotion velocity, session 20.91.01.6-1.11.30.3-1.1
Locomotion distance, session 20.30.41.2-0.30.7-0.0-1.1
Locomotion velocity, session 31.21.42.1-1.31.41.0-0.9
Locomotion distance, session 31.31.52.8-1.51.70.7-0.7
Stereotopy head waving bouts, day 31.01.21.81.3-1.3-0.80.8
Stereotopy head waving duration, day 30.10.10.20.3-0.30.4-0.2
Locomotion velocity, session 70.40.41.0-0.20.5-0.61.0
Locomotion distance, session 72.02.53.81.3-1.2-1.91.8
Stereotopy head waving bouts, day 72.73.24.8-1.51.52.2-1.8
Stereotopy head waving duration, day 73.94.96.9-2.12.12.6-1.9
Locomotion velocity, session 80.81.01.9-1.11.40.2-0.9
Locomotion distance, session 80.10.20.4-0.50.6-0.1-0.2
Degree of sensitization distance7.37.98.52.9-2.9-2.62.8
Degree of sensitization stereotypy3.53.94.8-1.91.82.2-2.0
Conditioned locomotion0.50.61.90.4-0.3-1.40.4
Cocaine response after cond. corrected0.50.72.50.3-0.4-0.51.6
Cocaine response after cond. not corrected0.40.62.00.2-0.4-0.51.4
Cocaine response before conditioning0.60.71.5-0.60.60.8-1.2
Saline control response0.30.41.00.5-0.60.2-1.0
Bone: connectivity density0.40.71.21.1-0.9-0.90.3
Bone: cortical apparent density0.71.22.8-1.00.81.70.4
Bone: cortical area0.00.00.1-0.20.10.3-0.0
Bone: cortical porosity2.32.43.8-1.51.61.1-1.9
Bone: cortical porosity2.52.85.3-1.51.51.3-2.3
Bone: cortical thickness0.40.61.3-0.80.61.1-0.3
Bone: cortical thickness1.21.52.1-1.41.31.4-0.2
Bone: cortical tissue density0.71.12.6-1.00.81.60.4
Condit. Reinf. active minus inactive responses1.51.72.7-1.01.11.3-1.6
Condit. Reinf. active-inactive response ratio0.00.00.10.2-0.20.10.2
Condit. Reinf. active responses2.22.95.1-1.41.31.6-2.2
Condit. Reinf. inactive responses1.62.04.3-1.21.11.1-2.1
Incentive salience index mean2.93.75.4-1.71.71.9-2.3
Condit. Reinf. lever presses3.24.96.3-2.12.02.2-2.5
Condit. Reinf. active minus inactive responses0.00.10.1-0.30.10.30.0
Condit. Reinf. active-inactive response ratio0.20.30.7-0.50.30.90.0
Condit. Reinf. active responses0.20.30.4-0.60.40.6-0.3
Condit. Reinf. inactive responses0.30.40.70.6-0.7-0.80.2
Condit. Reinf. lever presses2.94.24.8-2.02.02.2-2.1
Condit. Reinf. lever reinforcers received0.40.61.0-0.80.61.0-0.6
Conditioned reinforcement - actives2.39.111.93.2-3.4-3.02.3
Conditioned reinforcement - inactives2.46.77.92.7-2.6-2.82.0
Conditioned locomotion2.43.64.41.7-2.1-1.91.9
Patch foraging indifference point 0 sec0.10.20.50.2-0.0-0.5-0.7
Patch foraging indifference point AUC0.30.72.80.1-0.4-0.01.7
Delay disc. indifference point, 0s delay0.30.30.6-0.50.50.4-0.8
Delay disc. indifference point, 16s delay0.81.11.8-1.41.10.6-1.0
Delay disc. indifference point, 2s delay2.12.32.9-1.41.41.7-1.6
Delay disc. indifference point, 24s delay0.40.71.1-1.10.90.8-0.3
Delay disc. indifference point, 4s delay3.94.25.5-2.11.91.8-2.3
Delay disc. indifference point, 8s delay1.82.94.2-2.01.71.6-1.5
Indifference point function ln k0.31.02.9-0.60.70.5-1.7
Indifference point function log k0.31.02.9-0.60.70.5-1.7
Patch foraging total patch changes 0 sec0.10.31.1-0.20.40.0-1.0
Patch foraging total patch changes 12 sec0.30.40.5-0.70.70.7-0.2
Patch foraging total patch changes 18 sec0.00.10.1-0.0-0.10.30.4
Patch foraging total patch changes 24 sec0.20.60.7-0.80.80.5-0.8
Patch foraging total patch changes 6 sec0.10.10.4-0.10.00.00.6
Patch foraging time to switch 0 sec0.00.20.50.4-0.1-0.70.2
Patch foraging water rate 0 sec0.41.61.9-1.41.21.2-1.3
Patch foraging water rate 12 sec1.24.97.7-2.12.02.0-2.8
Patch foraging water rate 18 sec4.08.810.6-3.33.32.6-2.7
Patch foraging water rate 24 sec0.91.22.7-0.90.80.9-1.7
Patch foraging water rate 6 sec2.43.65.7-1.81.61.7-2.4
Seeking ratio, delayed vs. immediate footshock0.60.81.70.8-1.0-1.30.2
Distance traveled before self-admin0.20.31.0-0.10.20.5-1.0
Distance traveled after self-admin0.10.20.30.2-0.4-0.3-0.6
Extensor digitorum longus weight7.730.533.5-5.85.85.6-4.8
Bone: elastic displacement0.30.40.80.6-0.4-0.9-0.5
Bone: elastic work0.50.62.2-0.30.40.2-1.5
Bone: endosteal estimation0.40.91.81.0-0.8-1.30.1
Bone: endosteal perimeter0.81.93.61.5-1.3-1.90.3
Epididymis fat weight0.10.41.5-0.30.20.4-1.2
Delta time in closed arm before/after self-admin0.00.00.10.0-0.10.30.1
Delta time in open arm before/after self-admin1.31.62.20.8-1.1-1.41.5
Diff in mean of infusions in LGA sessions0.30.51.2-0.30.70.0-1.1
Delay discount exponential model param4.05.56.82.6-2.3-2.32.2
Extinction: sum of active levers before priming0.00.10.2-0.00.20.2-0.5
Active lever presses in extinction session 60.00.00.00.10.00.1-0.1
Bone: final force0.91.41.9-1.11.11.2-1.4
Bone: final moment1.21.93.0-1.21.21.3-1.7
Food consumed during 24 hour testing period0.10.30.6-0.30.30.8-0.7
Glucose0.10.10.2-0.50.50.20.3
Heart weight0.00.10.2-0.2-0.10.4-0.0
Delay discount hyperbolic model param3.84.95.92.4-2.1-2.22.2
Intermittent access intake day 1-15 change0.52.84.22.0-2.1-1.31.1
Intermittent access intake escalation0.31.92.91.7-1.7-0.90.9
Intermittent access intake escalation 20.81.31.61.2-1.3-0.91.1
Intermitt. access day 1 inactive lever presses0.78.79.03.0-3.0-3.02.8
Intermitt. access day 15 inactive lever presses0.42.12.71.6-1.6-1.50.8
Intermitt. access escalation Index0.00.10.2-0.40.20.40.4
Intermittent access day 1 total infusions0.41.31.41.2-1.2-1.11.0
Intermittent access day 15 total infusions1.74.35.32.3-2.3-2.01.6
Intermittent access terminal intake (last 3 days)2.64.65.12.3-2.2-2.12.1
Intermittent access total infusions4.95.86.72.5-2.6-2.32.2
Intermittent access day 1 locomotion0.20.30.50.4-0.5-0.70.6
Intermittent access day 15 total locomotion0.83.23.71.9-1.9-1.71.6
Intermittent access total locomotion2.02.42.91.7-1.7-1.51.4
Intermittent access standard deviation0.21.21.91.4-1.4-1.1-0.0
Left kidney weight0.86.67.3-2.72.62.4-2.6
Right kidney weight1.812.714.1-3.53.43.8-3.6
Cocaine induced anxiety0.61.52.1-1.21.11.1-1.5
Post-drug Anxiety0.40.51.6-0.40.40.4-1.3
Baseline Anxiety0.00.10.20.4-0.3-0.10.2
Tail length0.10.41.4-0.20.50.2-1.2
Length with tail0.21.03.4-0.20.6-0.1-1.9
Length without tail0.52.65.6-1.31.41.1-2.4
Times rat made contact with spout0.40.40.7-0.60.80.4-0.7
Lifetime Intake4.65.76.42.5-2.5-2.42.1
Liver weight, left1.83.14.5-1.51.41.8-2.1
Liver weight, right0.10.20.4-0.60.50.0-0.3
Locomotor activity4.57.111.0-2.32.62.3-3.3
Locomotor testing distance0.51.24.1-0.10.50.5-2.0
Locomotor testing rearing0.31.23.9-0.20.70.7-2.0
Locomotion in novel chamber1.92.63.5-1.41.91.7-1.5
Locomotion in novel chamber post-restriction0.10.30.5-0.70.6-0.2-0.6
Fecal boli incidents, locomotor time 11.23.14.1-2.02.01.9-0.8
Change in fecal boli incidents, locomotor task1.01.02.41.0-0.7-1.60.4
Time >=10cm from walls, locomotor time 10.30.31.20.00.20.4-1.1
Bouts of movement, locomotor time 10.50.60.9-0.90.90.8-0.6
Total resting periods, locomotor time 10.40.40.6-0.80.80.7-0.1
Rest time, locomotor task time 10.91.42.2-1.41.31.50.1
Distance moved, locomotor task time 10.41.21.61.3-1.3-1.20.2
Vertical activity count, locomotor time 10.11.01.51.2-0.8-1.2-0.7
Time >=10cm from walls, locomotor time 20.10.20.50.3-0.3-0.5-0.7
Bouts of movement, locomotor time 20.10.30.7-0.80.80.30.1
Total resting periods, locomotor time 20.10.61.1-1.01.00.50.1
Rest time, locomotor task time 21.22.03.2-1.81.71.3-0.3
Distance moved, locomotor task time 20.20.30.40.6-0.6-0.4-0.6
Vertical activity count, locomotor time 20.30.71.11.0-0.9-0.5-0.7
Light reinforcement 10.31.41.6-1.01.21.1-1.3
Light reinforcement 20.20.50.80.5-0.5-0.90.9
Bone: marrow area0.40.91.91.0-0.9-1.40.1
Bone: maximum diameter0.40.81.70.7-0.7-1.30.7
Bone: maximum force0.71.42.6-0.91.01.0-1.6
Bone: maximum moment1.01.83.8-1.01.11.2-1.9
Mean time between licks in bursts0.10.81.20.9-0.9-0.51.1
Mean num. licks in bursts0.10.20.70.00.1-0.1-0.9
Cd content in liver0.50.51.3-0.40.50.6-1.2
Co content in liver0.70.81.1-1.01.00.6-0.8
Cu content in liver1.72.02.4-1.51.51.5-1.1
Fe content in liver0.70.81.41.2-1.1-0.60.5
K content in liver0.30.20.50.3-0.3-0.50.7
Mg content in liver1.61.82.31.4-1.3-1.51.1
Mn content in liver1.01.11.61.3-1.3-0.90.7
Na content in liver2.32.64.0-1.51.41.5-2.0
Rb content in liver2.52.94.02.0-1.8-1.71.2
Se content in liver1.72.03.31.5-1.5-1.80.4
Sr content in liver0.60.50.70.6-0.6-0.70.8
Zn content in liver0.20.20.40.4-0.3-0.70.0
Bone: minimum diameter0.10.20.30.5-0.4-0.6-0.1
Time in familiar zone, hab. session 10.20.20.6-0.20.10.8-0.2
Time in novel zone, hab. session 10.20.30.70.4-0.2-0.80.5
Total zone transitions, hab. session 10.81.11.7-1.31.30.7-0.8
Total locomotion distance, hab. session 10.10.10.1-0.30.30.0-0.4
Locomotion velocity, hab. session 10.30.41.2-0.50.50.3-1.1
Time in familiar zone, hab. session 20.30.40.60.7-0.8-0.50.2
Time in novel zone, hab. session 20.30.30.7-0.60.80.3-0.2
Total zone transitions, hab. session 22.93.74.7-2.12.21.3-2.0
Total locomotion distance, hab. session 21.62.03.0-1.61.70.7-1.5
Locomotion velocity, hab. session 21.72.33.0-1.61.70.8-1.7
Novel to familiar place preference ratio1.11.52.41.3-1.1-1.50.8
Novelty place preference1.01.32.11.2-1.0-1.50.6
Time in novel zone, NPP test0.91.12.01.2-1.0-1.40.5
Total zone transitions, NPP test1.21.82.1-1.41.41.0-1.4
Total locomotion distance, NPP test0.10.10.30.10.0-0.5-0.0
Locomotion velocity, NPP test0.00.00.20.00.1-0.40.0
Intraocular pressure1.62.63.82.0-1.9-1.60.8
Delta distance traveled before/after self-admin1.11.21.50.8-1.2-1.21.1
Delta ambulatory time before/after self-admin0.50.91.20.7-1.1-1.10.9
Parametrial fat weight1.33.15.11.9-1.8-2.30.9
Pavlov. Cond. lever latency1.11.41.71.3-1.1-1.31.0
Pavlov. Cond. magazine entry latency0.10.10.20.3-0.50.1-0.1
Pavlov. Cond. change in total contacts0.70.71.4-0.70.50.8-1.2
Pavlov. Cond. index score1.72.22.5-1.61.41.5-1.4
Pavlov. Cond. latency score1.41.72.1-1.41.21.4-1.2
Pavlov. Cond. lever contacts0.91.11.4-1.21.01.0-1.0
Pavlov. Cond. magazine entry number0.81.01.30.9-0.7-1.11.1
Pavlov. Cond. intertrial magazine entries1.41.72.3-1.11.11.5-1.5
Pavlov. Cond. lever-magazine prob. diff.1.72.12.5-1.61.41.5-1.4
Pavlov. Cond. response bias1.01.21.4-1.21.01.2-1.1
Pavlov. Cond. lever latency3.44.85.22.1-2.2-2.22.3
Pavlov. Cond. magazine entry latency1.62.33.3-1.31.31.6-1.8
Pavlov. Cond. change in total contacts2.45.96.0-2.42.42.4-2.4
Pavlov. Cond. index score3.35.15.8-2.22.22.3-2.4
Pavlov. Cond. latency score3.14.95.9-2.12.02.3-2.4
Pavlov. Cond. lever contacts3.65.35.9-2.22.32.3-2.4
Pavlov. Cond. magazine entry number1.92.52.81.6-1.6-1.71.6
Pavlov. Cond. intertrial magazine entries1.63.53.92.0-1.8-1.91.8
Pavlov. Cond. lever-magazine prob. diff.3.14.75.3-2.12.02.3-2.3
Pavlov. Cond. response bias4.35.96.6-2.32.42.4-2.6
Time in closed arm before self-admin0.61.11.4-1.21.11.1-0.7
Time in closed arm after self-admin2.22.53.7-1.61.41.9-1.3
Time in open arm before self-admin0.40.51.70.00.40.4-1.3
Time in open arm after self-admin0.60.70.90.8-0.8-1.00.8
Bone: periosteal estimation0.20.50.90.8-0.7-0.90.3
Bone: periosteal perimeter0.20.40.70.6-0.6-0.80.3
Bone: post-yield work0.10.20.7-0.20.1-0.20.8
Progressive ratio test 1 active lever presses0.91.51.71.2-1.2-1.21.3
Progressive ratio test 1 breakpoint0.71.31.61.1-1.1-1.11.3
Progressive ratio test 1 inactive lever presses0.92.33.01.6-1.3-1.71.5
Progressive ratio test 2 active lever presses2.53.64.42.0-1.9-1.52.1
Progressive ratio test 2 breakpoint2.32.93.41.8-1.8-1.41.9
Progressive ratio test 2 inactive lever presses1.54.95.82.3-2.3-1.82.4
Incentive Sensitization - Responses0.82.13.21.8-1.6-0.91.4
Incentive Sensitization - Breakpoint0.81.92.91.7-1.5-0.91.2
Sum of active levers in priming session hrs 5-60.10.10.20.2-0.2-0.40.5
Progressive ratio0.10.30.4-0.60.60.4-0.6
Food seeking constrained by brief footshock1.11.43.60.8-1.1-0.61.9
Seeking ratio, punishment vs. effort0.10.30.80.3-0.6-0.10.9
Retroperitoneal fat weight0.00.00.10.00.0-0.0-0.3
Reaction time number correct0.00.00.10.3-0.10.00.2
Reaction time mean minus median0.00.20.50.0-0.20.4-0.7
Reaction time mean minus median AUC0.00.10.20.1-0.40.5-0.0
Reaction time num false alarms0.40.71.5-0.40.70.6-1.2
Reaction time num false alarms AUC0.41.01.5-0.71.01.0-1.2
Reaction time trials correct on left0.00.00.10.3-0.10.00.2
Reaction time trials on left0.00.10.10.4-0.2-0.00.3
Reaction time mean0.40.81.31.1-1.1-0.90.3
Reaction time mean AUC0.30.81.31.1-1.1-0.90.3
Median of all reaction times0.71.11.51.2-1.2-1.10.5
Reaction time omissions1.93.04.21.9-1.8-1.12.1
Reaction time false alarm rate0.60.91.1-0.81.10.9-1.0
Reaction time premature initiation rate0.40.60.8-0.60.70.8-0.9
Reaction time premature initiations0.10.20.2-0.20.30.5-0.5
Std. dev. reaction times0.20.61.00.8-1.0-0.60.4
Reaction time trials completed0.00.10.10.4-0.2-0.00.3
Reaction time trials AUC0.00.10.20.4-0.2-0.10.3
Run reversals in cocaine runway, females0.70.81.31.1-1.1-0.70.2
Run reversals in cocaine runway, males0.91.01.7-0.80.51.2-1.3
Latency to leave start box in cocaine runway0.60.91.20.9-1.0-1.10.7
Latency to leave start box in cocaine runway, F1.51.92.61.3-1.4-1.61.1
Latency to leave start box in cocaine runway, M0.20.20.3-0.40.50.5-0.4
Std. dev. time between licks in bursts1.63.14.82.1-2.2-1.60.8
Total sessions with >9 infusions2.83.54.11.9-2.0-2.01.6
Short access day 1 total inactive lever presses0.00.00.1-0.10.0-0.4-0.0
Short access day 10 total inactive lever presses0.00.20.70.3-0.3-0.20.8
Short access day 1 total infusions2.24.36.11.9-2.0-2.51.9
Short access day 10 total infusions0.50.81.20.9-1.1-1.10.2
Short access total infusions2.13.03.71.7-1.9-1.91.3
Short access day 1 locomotion0.20.30.80.3-0.4-0.90.6
Short access day 10 total locomotion0.00.20.5-0.20.10.7-0.3
Short access total locomotion0.00.10.10.1-0.4-0.30.1
One hour access (0.3 mA shock)2.52.94.11.7-2.0-1.21.8
Compulsive drug intake1.52.23.3-1.51.61.8-0.8
One hour access (shock baseline)2.25.87.42.5-2.7-2.51.8
Social response proportion2.32.93.91.7-1.4-2.01.7
Social responses1.52.03.11.8-1.6-1.21.0
Social time0.81.32.4-1.01.61.0-0.8
Soleus weight0.51.42.9-1.21.01.7-0.2
Bone: stiffness0.20.40.6-0.70.80.6-0.5
Tibialis anterior weight8.127.831.9-5.65.75.3-4.4
Time to tail flick, vehicle, before self-admin0.10.10.30.1-0.40.1-0.5
Time to tail flick, vehicle, after self-admin0.00.00.10.10.4-0.2-0.1
Time to tail flick, test, before self-admin0.70.81.1-0.71.01.0-0.8
Time to tail flick, test, after self-admin2.42.63.61.9-1.8-1.21.3
Delta time to tail flick, vehicle, before/after SA0.20.20.40.10.6-0.30.6
Delta time to tail flick, test, before/after SA2.53.24.11.8-2.0-1.61.6
Tibia length0.92.64.7-1.31.51.3-2.2
Ambulatory time before self-admin0.30.91.9-0.60.80.9-1.4
Ambulatory time after self-admin0.40.61.6-0.60.60.4-1.3
Bone: tissue strength0.30.40.60.8-0.7-0.60.0
Total heroin consumption0.50.61.6-0.40.41.2-0.7
Bone: trabecular number0.40.71.40.9-0.8-1.20.1
Bone: trabecular spacing0.30.40.7-0.80.60.8-0.1
Bone: trabecular thickness0.71.01.3-1.01.10.7-1.2
Bone: trabecular tissue density0.71.22.0-1.41.21.1-0.3
Water consumed over 24 hours0.20.41.0-0.50.50.3-1.0
Number of responses in last shaping day0.70.92.20.7-0.9-1.5-0.0