Sbf1

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Liver gene expression Sbf1 0.06 0.03 9.2e-07 0.02 0.04 0.02 0.03 1.8e-03 7.9e-05 9.1e-04 9.6e-05
2 NAcc gene expression Sbf1 0.03 0.02 8.9e-04 0 0.02 0.01 0.01 6.1e-02 1.5e-03 9.0e-03 1.7e-02
3 Brain mRNA stability Sbf1 0.03 0.02 6.3e-04 0.02 0.03 0.02 0.03 3.6e-03 5.3e-04 4.3e-03 1.5e-03
4 pVTA mRNA stability Sbf1 0.06 0.04 6.7e-04 0.05 0.03 0.03 0.03 7.3e-05 1.1e-03 3.1e-03 9.3e-04

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3 4
Bone: apparent density0.91.53.3-1.40.81.80.0
Area under the delay curve0.40.51.1-0.50.20.7-1.0
BMI with tail4.013.718.64.3-4.1-3.8-2.3
BMI without tail1.54.77.62.5-2.1-2.8-0.5
Body weight1.77.410.43.2-2.9-3.0-1.3
Weight adjusted by age3.35.06.12.5-2.4-1.9-2.1
Bone surface0.71.23.1-0.90.21.8-0.9
Bone volume0.91.54.0-1.30.62.0-0.4
Breakpoint value in progressive ratio session0.40.50.70.7-0.8-0.3-0.8
Number of licking bursts0.00.00.1-0.30.30.10.2
Context. condit. distance diff. score1.11.43.01.3-0.9-1.7-0.1
Locomotion velocity, session 10.20.20.20.4-0.4-0.4-0.5
Locomotion distance, session 11.41.82.7-1.61.51.50.1
Locomotion velocity, session 20.70.81.21.0-1.1-0.7-0.9
Locomotion distance, session 20.60.81.2-1.11.01.00.1
Locomotion velocity, session 30.70.82.3-0.20.6-0.61.5
Locomotion distance, session 30.30.30.4-0.60.60.40.6
Stereotopy head waving bouts, day 31.51.74.0-1.50.92.0-0.2
Stereotopy head waving duration, day 30.70.91.4-1.10.81.20.4
Locomotion velocity, session 70.30.30.90.4-0.2-0.50.9
Locomotion distance, session 70.20.20.50.4-0.1-0.70.4
Stereotopy head waving bouts, day 70.60.71.4-1.00.71.20.1
Stereotopy head waving duration, day 71.21.41.9-1.41.11.30.9
Locomotion velocity, session 80.40.51.00.9-1.0-0.7-0.0
Locomotion distance, session 80.71.01.21.1-0.9-1.1-1.0
Degree of sensitization distance2.12.22.71.6-1.6-1.3-1.3
Degree of sensitization stereotypy0.20.20.4-0.40.50.20.6
Conditioned locomotion0.20.30.50.6-0.5-0.7-0.1
Cocaine response after cond. corrected0.91.11.61.3-1.2-1.1-0.6
Cocaine response after cond. not corrected2.12.43.41.8-1.6-1.8-0.6
Cocaine response before conditioning0.70.91.21.1-0.9-1.1-0.4
Saline control response1.72.23.91.4-1.6-0.7-2.0
Bone: connectivity density0.71.22.5-1.20.81.60.0
Bone: cortical apparent density2.33.24.3-2.12.01.71.2
Bone: cortical area1.01.52.41.2-1.6-0.3-1.4
Bone: cortical porosity1.51.63.71.0-1.3-0.3-1.9
Bone: cortical porosity2.83.05.41.6-1.8-0.9-2.3
Bone: cortical thickness0.00.00.10.2-0.30.1-0.1
Bone: cortical thickness0.30.30.80.3-0.0-0.70.9
Bone: cortical tissue density2.12.83.8-2.01.91.61.1
Condit. Reinf. active minus inactive responses1.71.93.11.3-1.8-0.4-1.6
Condit. Reinf. active-inactive response ratio0.10.10.30.2-0.50.2-0.6
Condit. Reinf. active responses2.43.04.61.8-2.1-1.0-1.8
Condit. Reinf. inactive responses1.72.12.81.6-1.7-1.2-1.3
Incentive salience index mean3.03.75.61.9-2.4-0.8-2.3
Condit. Reinf. lever presses2.63.65.01.9-2.2-1.0-2.2
Condit. Reinf. active minus inactive responses0.50.61.20.1-0.60.9-1.1
Condit. Reinf. active-inactive response ratio0.10.10.5-0.1-0.20.7-0.2
Condit. Reinf. active responses1.01.53.20.9-1.40.2-1.8
Condit. Reinf. inactive responses1.01.32.01.1-1.1-0.8-1.4
Condit. Reinf. lever presses1.62.33.61.6-1.9-0.7-1.6
Condit. Reinf. lever reinforcers received1.01.43.20.8-1.30.4-1.8
Conditioned reinforcement - actives0.81.42.01.2-1.4-0.6-1.4
Conditioned reinforcement - inactives0.10.20.30.5-0.4-0.60.0
Conditioned locomotion2.33.04.22.1-1.8-1.9-0.9
Patch foraging indifference point 0 sec0.40.70.90.9-1.0-0.7-0.6
Patch foraging indifference point AUC0.81.23.5-0.0-0.61.0-1.9
Delay disc. indifference point, 0s delay2.62.85.51.4-1.9-0.2-2.3
Delay disc. indifference point, 16s delay0.30.31.1-0.1-0.20.4-1.1
Delay disc. indifference point, 2s delay2.22.45.2-0.80.02.0-2.3
Delay disc. indifference point, 24s delay0.20.30.40.6-0.4-0.7-0.3
Delay disc. indifference point, 4s delay0.30.30.8-0.40.20.6-0.9
Delay disc. indifference point, 8s delay0.60.71.1-1.01.10.70.2
Indifference point function ln k1.32.34.41.8-1.3-2.10.0
Indifference point function log k1.32.34.41.8-1.3-2.10.0
Patch foraging total patch changes 0 sec0.10.30.40.6-0.6-0.4-0.4
Patch foraging total patch changes 12 sec0.81.12.50.5-1.10.5-1.6
Patch foraging total patch changes 18 sec0.81.32.9-1.00.41.7-1.0
Patch foraging total patch changes 24 sec0.30.61.6-0.4-0.21.3-0.7
Patch foraging total patch changes 6 sec0.50.82.50.4-0.70.2-1.6
Patch foraging time to switch 0 sec0.30.50.7-0.90.80.80.4
Patch foraging water rate 0 sec0.51.12.41.2-0.8-1.50.3
Patch foraging water rate 12 sec1.42.84.32.0-1.6-2.1-0.5
Patch foraging water rate 18 sec2.33.67.12.2-1.5-2.70.4
Patch foraging water rate 24 sec0.91.33.31.1-0.5-1.80.5
Patch foraging water rate 6 sec0.60.92.11.0-0.6-1.4-0.0
Seeking ratio, delayed vs. immediate footshock0.60.70.9-0.90.80.90.6
Distance traveled before self-admin0.91.21.7-1.31.21.10.5
Distance traveled after self-admin0.20.20.4-0.40.50.20.6
Extensor digitorum longus weight0.31.01.91.2-0.9-1.4-0.0
Bone: elastic displacement0.20.20.3-0.50.50.4-0.2
Bone: elastic work0.40.50.60.7-0.7-0.7-0.7
Bone: endosteal estimation0.51.11.71.1-1.3-0.5-1.2
Bone: endosteal perimeter2.55.410.61.8-2.80.1-3.2
Epididymis fat weight2.17.112.22.9-3.5-1.4-2.4
Delta time in closed arm before/after self-admin0.10.10.30.1-0.0-0.1-0.6
Delta time in open arm before/after self-admin0.00.00.1-0.0-0.10.10.2
Diff in mean of infusions in LGA sessions2.42.94.41.7-2.0-0.7-2.1
Delay discount exponential model param0.30.30.60.5-0.4-0.60.8
Extinction: sum of active levers before priming0.30.31.00.0-0.20.5-1.0
Active lever presses in extinction session 62.12.13.01.7-1.5-1.6-0.7
Bone: final force0.00.00.1-0.1-0.10.3-0.3
Bone: final moment0.00.10.1-0.30.10.4-0.1
Food consumed during 24 hour testing period1.72.33.21.8-1.6-1.8-0.8
Glucose0.10.10.4-0.0-0.10.4-0.7
Heart weight0.20.30.70.4-0.1-0.70.8
Delay discount hyperbolic model param0.50.60.80.7-0.5-0.90.8
Intermittent access intake day 1-15 change0.71.41.91.4-1.3-1.0-0.9
Intermittent access intake escalation0.71.52.11.4-1.4-1.0-1.0
Intermittent access intake escalation 23.43.95.82.1-2.4-1.0-2.1
Intermitt. access day 1 inactive lever presses0.41.31.81.3-1.3-0.9-1.1
Intermitt. access day 15 inactive lever presses1.22.54.91.8-1.3-2.20.2
Intermitt. access escalation Index0.50.70.9-0.80.90.71.0
Intermittent access day 1 total infusions0.00.10.1-0.10.3-0.20.4
Intermittent access day 15 total infusions0.20.20.40.6-0.4-0.6-0.2
Intermittent access terminal intake (last 3 days)1.62.12.81.7-1.6-1.2-1.3
Intermittent access total infusions0.20.20.30.6-0.5-0.5-0.5
Intermittent access day 1 locomotion0.00.00.10.0-0.00.1-0.2
Intermittent access day 15 total locomotion0.81.51.81.4-1.3-1.1-1.2
Intermittent access total locomotion0.70.81.21.0-0.8-1.1-0.6
Intermittent access standard deviation0.20.40.80.6-0.3-0.90.5
Left kidney weight4.822.430.55.5-5.2-4.7-3.0
Right kidney weight6.931.643.66.6-6.0-6.1-3.1
Cocaine induced anxiety0.60.91.61.2-0.9-1.20.0
Post-drug Anxiety1.01.02.11.2-0.8-1.40.2
Baseline Anxiety0.40.50.7-0.80.80.60.5
Tail length0.31.41.7-1.31.21.30.8
Length with tail0.00.00.10.2-0.30.1-0.1
Length without tail0.62.03.01.5-1.7-0.8-1.5
Times rat made contact with spout1.31.53.20.60.3-1.81.5
Lifetime Intake0.20.20.40.6-0.4-0.7-0.3
Liver weight, left0.61.01.61.0-1.0-0.6-1.3
Liver weight, right0.10.10.40.0-0.00.1-0.6
Locomotor activity0.91.42.51.1-1.5-0.2-1.6
Locomotor testing distance0.40.70.9-1.00.90.90.4
Locomotor testing rearing0.71.43.90.2-0.90.9-2.0
Locomotion in novel chamber1.11.42.90.8-0.2-1.71.5
Locomotion in novel chamber post-restriction0.40.61.9-0.1-0.30.7-1.4
Fecal boli incidents, locomotor time 10.40.60.9-0.91.00.60.6
Change in fecal boli incidents, locomotor task0.60.60.80.9-0.8-0.7-0.4
Time >=10cm from walls, locomotor time 10.90.91.51.0-1.2-0.4-1.1
Bouts of movement, locomotor time 10.10.10.10.3-0.3-0.30.2
Total resting periods, locomotor time 10.00.00.1-0.10.2-0.00.3
Rest time, locomotor task time 10.60.71.2-0.71.1-0.11.1
Distance moved, locomotor task time 10.40.71.30.9-1.2-0.1-0.8
Vertical activity count, locomotor time 10.82.03.61.5-1.9-0.6-1.3
Time >=10cm from walls, locomotor time 22.03.04.21.9-2.0-1.3-1.5
Bouts of movement, locomotor time 20.20.40.5-0.70.70.50.6
Total resting periods, locomotor time 20.20.40.5-0.70.70.60.4
Rest time, locomotor task time 21.51.92.7-1.41.60.71.6
Distance moved, locomotor task time 22.63.14.31.9-2.1-1.1-1.8
Vertical activity count, locomotor time 22.53.54.92.0-2.2-1.2-1.9
Light reinforcement 10.71.82.81.3-1.6-0.5-1.7
Light reinforcement 24.06.18.62.7-2.9-1.6-2.5
Bone: marrow area0.40.91.30.9-1.1-0.3-1.1
Bone: maximum diameter1.52.94.91.9-2.2-0.9-1.6
Bone: maximum force0.00.00.10.2-0.2-0.1-0.3
Bone: maximum moment0.00.00.0-0.00.0-0.0-0.1
Mean time between licks in bursts1.94.76.5-2.42.61.61.9
Mean num. licks in bursts0.20.40.80.30.1-0.90.8
Cd content in liver0.20.30.5-0.60.40.7-0.2
Co content in liver0.91.02.20.8-1.1-0.2-1.5
Cu content in liver2.73.26.9-1.41.90.22.6
Fe content in liver0.10.20.4-0.1-0.10.4-0.6
K content in liver0.20.20.6-0.40.10.80.3
Mg content in liver0.60.61.5-0.80.31.2-0.4
Mn content in liver0.10.20.30.0-0.50.6-0.3
Na content in liver3.03.37.6-2.01.22.8-0.0
Rb content in liver0.30.30.90.3-0.50.3-1.0
Se content in liver0.10.20.30.4-0.4-0.50.2
Sr content in liver2.42.02.7-1.51.61.01.5
Zn content in liver1.31.52.3-1.21.50.31.5
Bone: minimum diameter0.61.21.91.0-1.4-0.2-1.3
Time in familiar zone, hab. session 10.50.50.90.20.3-0.91.0
Time in novel zone, hab. session 10.70.71.5-0.60.11.2-0.8
Total zone transitions, hab. session 11.42.03.0-1.71.71.50.4
Total locomotion distance, hab. session 10.10.20.60.1-0.0-0.1-0.8
Locomotion velocity, hab. session 10.10.20.8-0.0-0.00.1-0.9
Time in familiar zone, hab. session 20.80.81.61.0-0.6-1.20.6
Time in novel zone, hab. session 21.31.32.2-1.41.01.5-0.1
Total zone transitions, hab. session 20.10.20.60.20.1-0.80.2
Total locomotion distance, hab. session 21.11.52.41.3-1.0-1.5-0.9
Locomotion velocity, hab. session 21.11.52.31.3-1.0-1.5-1.0
Novel to familiar place preference ratio0.80.91.6-0.90.90.61.3
Novelty place preference0.60.71.5-0.70.80.41.2
Time in novel zone, NPP test0.91.02.1-0.91.00.41.5
Total zone transitions, NPP test0.50.71.3-0.91.10.50.6
Total locomotion distance, NPP test0.20.30.80.3-0.3-0.2-0.9
Locomotion velocity, NPP test0.20.30.90.4-0.4-0.4-0.9
Intraocular pressure0.40.61.60.2-0.60.5-1.3
Delta distance traveled before/after self-admin1.71.83.31.6-1.2-1.80.1
Delta ambulatory time before/after self-admin0.81.02.11.1-0.8-1.50.1
Parametrial fat weight0.30.71.01.0-0.9-0.9-0.4
Pavlov. Cond. lever latency1.92.53.2-1.61.81.01.8
Pavlov. Cond. magazine entry latency0.20.30.7-0.50.10.9-0.2
Pavlov. Cond. change in total contacts0.50.51.10.0-0.60.7-1.1
Pavlov. Cond. index score0.20.20.50.2-0.50.3-0.7
Pavlov. Cond. latency score0.30.40.80.5-0.80.1-0.9
Pavlov. Cond. lever contacts1.61.92.91.3-1.6-0.7-1.7
Pavlov. Cond. magazine entry number0.30.41.00.5-0.2-1.00.4
Pavlov. Cond. intertrial magazine entries1.62.02.71.5-1.6-1.0-1.4
Pavlov. Cond. lever-magazine prob. diff.0.10.20.4-0.0-0.30.5-0.7
Pavlov. Cond. response bias0.40.51.00.5-0.70.0-1.0
Pavlov. Cond. lever latency1.11.52.3-1.51.41.20.2
Pavlov. Cond. magazine entry latency0.50.61.01.0-1.0-0.7-0.1
Pavlov. Cond. change in total contacts0.30.40.80.6-0.90.1-0.7
Pavlov. Cond. index score0.81.11.71.3-1.3-0.9-0.3
Pavlov. Cond. latency score1.31.72.61.6-1.5-1.3-0.4
Pavlov. Cond. lever contacts1.21.62.51.6-1.5-1.3-0.3
Pavlov. Cond. magazine entry number0.91.11.6-1.31.21.00.4
Pavlov. Cond. intertrial magazine entries0.10.10.2-0.10.4-0.40.1
Pavlov. Cond. lever-magazine prob. diff.0.91.21.81.4-1.3-1.0-0.3
Pavlov. Cond. response bias0.40.50.90.9-1.0-0.5-0.1
Time in closed arm before self-admin1.11.43.8-0.7-0.22.0-1.1
Time in closed arm after self-admin1.31.33.70.3-0.90.9-1.9
Time in open arm before self-admin0.30.30.5-0.30.7-0.40.6
Time in open arm after self-admin0.00.00.10.10.0-0.30.2
Bone: periosteal estimation0.91.93.11.4-1.7-0.4-1.6
Bone: periosteal perimeter2.44.16.61.9-2.6-0.4-2.5
Bone: post-yield work1.11.62.5-1.31.60.61.4
Progressive ratio test 1 active lever presses0.40.51.3-0.30.7-0.31.1
Progressive ratio test 1 breakpoint0.40.51.3-0.40.7-0.21.1
Progressive ratio test 1 inactive lever presses0.10.20.30.5-0.5-0.3-0.3
Progressive ratio test 2 active lever presses0.80.91.21.1-0.9-1.1-0.7
Progressive ratio test 2 breakpoint0.60.70.90.9-0.8-0.9-0.6
Progressive ratio test 2 inactive lever presses0.91.51.81.3-1.3-1.1-1.1
Incentive Sensitization - Responses1.72.43.21.6-1.7-1.0-1.8
Incentive Sensitization - Breakpoint1.72.23.01.5-1.6-1.0-1.7
Sum of active levers in priming session hrs 5-60.20.20.40.2-0.40.1-0.6
Progressive ratio0.10.20.30.5-0.4-0.5-0.3
Food seeking constrained by brief footshock3.23.95.22.2-1.8-2.3-1.5
Seeking ratio, punishment vs. effort0.20.30.60.5-0.6-0.2-0.8
Retroperitoneal fat weight2.510.813.83.7-3.7-2.8-2.8
Reaction time number correct0.30.61.0-0.91.00.6-0.0
Reaction time mean minus median0.00.10.30.3-0.5-0.0-0.2
Reaction time mean minus median AUC0.10.10.20.4-0.5-0.3-0.1
Reaction time num false alarms0.10.20.5-0.40.10.7-0.3
Reaction time num false alarms AUC0.00.10.1-0.30.30.30.1
Reaction time trials correct on left0.30.61.0-0.91.00.6-0.0
Reaction time trials on left0.30.61.1-1.01.10.60.0
Reaction time mean0.71.13.0-0.81.00.21.7
Reaction time mean AUC0.71.22.7-0.91.00.31.6
Median of all reaction times1.42.05.0-1.01.40.22.2
Reaction time omissions0.71.01.2-1.01.10.61.1
Reaction time false alarm rate0.00.00.10.1-0.30.20.0
Reaction time premature initiation rate4.96.89.92.6-3.2-1.1-3.1
Reaction time premature initiations1.83.36.11.6-2.0-0.6-2.5
Std. dev. reaction times0.10.20.50.1-0.0-0.30.7
Reaction time trials completed0.30.61.1-1.01.10.60.0
Reaction time trials AUC0.20.40.8-0.80.90.40.0
Run reversals in cocaine runway, females0.20.20.4-0.00.2-0.30.7
Run reversals in cocaine runway, males0.50.50.8-0.70.60.9-0.5
Latency to leave start box in cocaine runway1.51.74.01.4-0.8-2.00.2
Latency to leave start box in cocaine runway, F2.22.55.91.5-0.8-2.40.9
Latency to leave start box in cocaine runway, M0.30.30.90.3-0.4-0.1-0.9
Std. dev. time between licks in bursts1.72.23.11.5-1.5-1.2-1.7
Total sessions with >9 infusions0.30.30.90.30.1-0.90.6
Short access day 1 total inactive lever presses2.83.76.82.2-1.7-2.6-0.3
Short access day 10 total inactive lever presses4.09.713.23.6-3.6-2.7-2.4
Short access day 1 total infusions0.70.92.50.9-0.4-1.60.4
Short access day 10 total infusions0.60.81.51.0-0.7-1.2-0.1
Short access total infusions0.50.61.50.9-0.5-1.20.0
Short access day 1 locomotion0.70.92.01.0-0.6-1.40.5
Short access day 10 total locomotion0.50.91.71.1-0.8-1.3-0.2
Short access total locomotion0.40.51.00.8-0.5-1.00.1
One hour access (0.3 mA shock)1.82.02.91.6-1.7-0.8-1.5
Compulsive drug intake0.00.00.1-0.1-0.00.3-0.0
One hour access (shock baseline)0.81.21.61.2-1.3-0.8-1.2
Social response proportion0.20.20.6-0.40.10.8-0.3
Social responses0.10.20.5-0.1-0.20.7-0.4
Social time0.30.41.20.40.1-1.10.6
Soleus weight0.82.44.31.8-1.4-2.1-0.1
Bone: stiffness0.10.20.3-0.40.40.20.6
Tibialis anterior weight0.00.00.10.2-0.2-0.30.1
Time to tail flick, vehicle, before self-admin2.42.53.71.7-1.9-1.2-1.3
Time to tail flick, vehicle, after self-admin0.70.91.51.1-1.2-0.6-0.8
Time to tail flick, test, before self-admin0.40.41.00.7-1.0-0.2-0.5
Time to tail flick, test, after self-admin2.22.34.11.8-1.4-2.00.2
Delta time to tail flick, vehicle, before/after SA0.90.91.2-1.01.10.80.7
Delta time to tail flick, test, before/after SA0.30.41.10.40.1-1.00.5
Tibia length0.92.53.4-1.81.91.51.1
Ambulatory time before self-admin0.40.70.9-0.81.00.40.9
Ambulatory time after self-admin0.10.10.3-0.00.2-0.30.5
Bone: tissue strength1.11.12.5-1.11.60.10.8
Total heroin consumption0.20.30.50.5-0.6-0.2-0.7
Bone: trabecular number0.71.12.5-1.20.81.6-0.0
Bone: trabecular spacing1.92.54.41.8-1.3-2.1-0.6
Bone: trabecular thickness0.20.30.50.0-0.40.7-0.7
Bone: trabecular tissue density1.52.22.8-1.61.71.31.3
Water consumed over 24 hours0.30.40.80.7-0.4-0.9-0.3
Number of responses in last shaping day0.40.50.8-0.60.9-0.10.9