Rps6kb2

Models

All models for this gene with cis-heritability P-value <0.01 were tested and are shown here. In each tissue, a gene can have zero, one, or multiple RNA phenotypes for each RNA modality. After the heritability statistics, subsequent columns show cross-validation performance (R2 and P-value) of each modeling method. The best-performing method for each models is used for TWAS.

# Tissue Modality RNA phenotype h2 h2 SE h2 P xQTL R2 BLUP R2 ENET R2 LASSO R2 xQTL P BLUP P ENET P LASSO P
1 Brain isoform ratio XR_005488929.2 0.02 0.02 3.5e-03 0.03 0.02 0.02 0.02 1.7e-03 4.8e-03 9.0e-03 2.9e-03
2 IC intron excision ratio chr1_210883738_210884130 0.11 0.08 4.3e-03 0.06 0.04 0.05 0.04 2.2e-03 7.4e-03 3.3e-03 7.0e-03
3 IC mRNA stability Rps6kb2 0.14 0.1 4.4e-03 0.04 0.01 0.02 0.02 1.1e-02 8.3e-02 6.4e-02 3.5e-02

Trait associations

The numbered columns correspond to the numbered models in the table above. They contain the TWAS Z-score for each trait-model pair. Colors indicate strength of Z-scores: cells with lower negative Z-scores are darker blue, cells with higher positive Z-scores are darker red. Significant associations have white and bolded text.

Trait Avg chi2 ratio Avg chi2 Max chi2 1 2 3
Bone: apparent density2.64.77.01.2-2.62.4
Area under the delay curve0.60.91.10.8-1.01.0
BMI with tail2.48.413.60.7-3.43.7
BMI without tail0.52.84.8-0.3-1.92.2
Body weight1.14.85.6-1.8-2.42.3
Weight adjusted by age0.20.51.3-1.1-0.20.2
Bone surface2.95.89.30.3-3.12.8
Bone volume1.93.75.80.8-2.42.2
Breakpoint value in progressive ratio session0.50.91.1-1.1-0.90.9
Number of licking bursts0.00.00.0-0.0-0.20.0
Context. condit. distance diff. score0.30.31.01.0-0.00.0
Locomotion velocity, session 10.00.00.00.0-0.10.1
Locomotion distance, session 11.52.02.90.6-1.71.6
Locomotion velocity, session 20.60.71.3-1.2-0.60.6
Locomotion distance, session 20.70.91.4-0.2-1.21.2
Locomotion velocity, session 31.82.02.51.1-1.51.6
Locomotion distance, session 30.20.20.40.3-0.40.6
Stereotopy head waving bouts, day 31.41.72.01.4-1.21.2
Stereotopy head waving duration, day 30.70.92.11.4-0.60.4
Locomotion velocity, session 71.31.41.90.9-1.21.4
Locomotion distance, session 70.30.40.6-0.1-0.70.8
Stereotopy head waving bouts, day 71.31.52.01.4-1.11.1
Stereotopy head waving duration, day 71.31.62.30.7-1.51.4
Locomotion velocity, session 80.40.51.0-1.0-0.70.4
Locomotion distance, session 80.20.30.60.8-0.50.5
Degree of sensitization distance0.40.50.70.1-0.90.8
Degree of sensitization stereotypy0.50.60.90.4-1.00.8
Conditioned locomotion2.12.55.7-2.40.9-1.0
Cocaine response after cond. corrected0.10.10.20.5-0.10.2
Cocaine response after cond. not corrected0.30.40.60.8-0.50.5
Cocaine response before conditioning0.10.10.20.1-0.40.2
Saline control response0.81.12.0-1.4-1.00.5
Bone: connectivity density3.55.59.10.4-3.02.7
Bone: cortical apparent density0.30.41.0-1.00.4-0.3
Bone: cortical area0.60.91.7-1.30.5-0.8
Bone: cortical porosity0.00.00.00.1-0.20.0
Bone: cortical porosity0.10.10.1-0.4-0.2-0.0
Bone: cortical thickness3.05.012.2-3.51.0-1.4
Bone: cortical thickness0.91.12.9-1.70.2-0.5
Bone: cortical tissue density0.30.51.3-1.10.4-0.2
Condit. Reinf. active minus inactive responses0.50.50.80.4-0.80.9
Condit. Reinf. active-inactive response ratio0.30.30.40.5-0.50.6
Condit. Reinf. active responses0.10.10.20.2-0.20.4
Condit. Reinf. inactive responses0.10.10.10.10.4-0.2
Incentive salience index mean0.30.40.60.2-0.70.8
Condit. Reinf. lever presses0.00.00.1-0.30.1-0.2
Condit. Reinf. active minus inactive responses1.11.72.41.6-1.01.3
Condit. Reinf. active-inactive response ratio0.71.13.01.7-0.30.5
Condit. Reinf. active responses1.62.42.91.4-1.51.7
Condit. Reinf. inactive responses0.91.42.20.1-1.51.4
Condit. Reinf. lever presses1.01.52.30.3-1.51.4
Condit. Reinf. lever reinforcers received1.82.63.51.2-1.71.9
Conditioned reinforcement - actives0.20.71.2-0.31.1-1.0
Conditioned reinforcement - inactives0.51.54.02.00.5-0.3
Conditioned locomotion2.63.84.62.02.1-1.7
Patch foraging indifference point 0 sec0.10.30.70.80.2-0.2
Patch foraging indifference point AUC0.41.02.7-1.60.5-0.1
Delay disc. indifference point, 0s delay1.61.82.21.3-1.21.5
Delay disc. indifference point, 16s delay0.30.41.01.00.1-0.1
Delay disc. indifference point, 2s delay0.50.61.11.0-0.50.6
Delay disc. indifference point, 24s delay0.20.30.5-0.50.5-0.7
Delay disc. indifference point, 4s delay0.60.61.10.3-0.81.0
Delay disc. indifference point, 8s delay0.20.40.60.5-0.80.5
Indifference point function ln k0.61.93.31.81.0-1.1
Indifference point function log k0.61.93.31.81.0-1.1
Patch foraging total patch changes 0 sec0.10.20.30.20.6-0.6
Patch foraging total patch changes 12 sec0.71.02.3-1.5-0.50.7
Patch foraging total patch changes 18 sec0.10.10.2-0.3-0.30.4
Patch foraging total patch changes 24 sec0.20.61.6-1.30.3-0.0
Patch foraging total patch changes 6 sec0.50.81.3-0.1-1.01.1
Patch foraging time to switch 0 sec0.93.66.40.6-2.52.0
Patch foraging water rate 0 sec1.76.210.7-0.23.3-2.8
Patch foraging water rate 12 sec1.76.911.60.33.4-3.0
Patch foraging water rate 18 sec0.51.11.70.21.2-1.3
Patch foraging water rate 24 sec2.84.06.2-0.42.5-2.4
Patch foraging water rate 6 sec2.43.55.3-0.62.3-2.2
Seeking ratio, delayed vs. immediate footshock0.71.01.40.7-1.21.0
Distance traveled before self-admin0.20.40.60.3-0.80.8
Distance traveled after self-admin0.00.00.10.1-0.3-0.1
Extensor digitorum longus weight1.97.720.9-4.6-1.20.9
Bone: elastic displacement2.53.23.8-1.51.9-1.9
Bone: elastic work1.41.84.6-2.10.5-0.8
Bone: endosteal estimation0.92.35.32.3-0.90.9
Bone: endosteal perimeter1.94.811.33.4-1.21.3
Epididymis fat weight0.94.57.32.71.7-1.8
Delta time in closed arm before/after self-admin0.60.61.7-1.30.00.0
Delta time in open arm before/after self-admin0.30.30.40.6-0.60.6
Diff in mean of infusions in LGA sessions0.20.30.9-1.0-0.0-0.2
Delay discount exponential model param0.50.70.9-0.60.9-0.9
Extinction: sum of active levers before priming0.81.22.0-0.4-1.41.2
Active lever presses in extinction session 60.50.51.5-1.2-0.10.3
Bone: final force0.40.70.9-0.8-1.00.7
Bone: final moment0.40.70.8-0.8-0.90.7
Food consumed during 24 hour testing period0.30.61.0-0.10.9-1.0
Glucose2.33.67.12.7-1.31.4
Heart weight1.32.12.91.7-1.41.2
Delay discount hyperbolic model param0.60.81.0-0.71.0-1.0
Intermittent access intake day 1-15 change0.31.72.51.11.2-1.6
Intermittent access intake escalation0.31.62.60.91.2-1.6
Intermittent access intake escalation 20.71.21.41.10.9-1.2
Intermitt. access day 1 inactive lever presses0.00.00.00.20.1-0.1
Intermitt. access day 15 inactive lever presses0.31.44.22.0-0.40.0
Intermitt. access escalation Index0.61.72.50.41.6-1.6
Intermittent access day 1 total infusions1.64.99.83.1-1.51.7
Intermittent access day 15 total infusions1.33.19.23.00.3-0.4
Intermittent access terminal intake (last 3 days)2.03.410.13.2-0.20.3
Intermittent access total infusions2.32.87.42.7-0.60.8
Intermittent access day 1 locomotion1.22.14.32.1-0.81.2
Intermittent access day 15 total locomotion0.62.47.22.70.2-0.1
Intermittent access total locomotion3.23.911.53.4-0.00.2
Intermittent access standard deviation0.10.41.21.10.2-0.2
Left kidney weight0.21.32.71.70.7-0.8
Right kidney weight0.21.52.40.81.2-1.5
Cocaine induced anxiety0.00.10.10.3-0.30.3
Post-drug Anxiety0.10.20.3-0.2-0.50.4
Baseline Anxiety0.10.20.5-0.7-0.1-0.0
Tail length0.42.35.3-2.30.8-0.9
Length with tail0.93.911.7-3.4-0.1-0.3
Length without tail0.52.57.4-2.7-0.3-0.0
Times rat made contact with spout0.60.61.20.1-1.10.8
Lifetime Intake1.62.05.22.3-0.50.8
Liver weight, left0.61.01.6-0.21.1-1.3
Liver weight, right0.61.11.80.41.2-1.3
Locomotor activity0.61.01.50.21.2-1.2
Locomotor testing distance0.41.11.60.21.3-1.3
Locomotor testing rearing0.10.30.91.0-0.00.2
Locomotion in novel chamber2.12.87.52.70.6-0.6
Locomotion in novel chamber post-restriction0.51.53.21.80.9-0.7
Fecal boli incidents, locomotor time 10.00.00.10.10.1-0.3
Change in fecal boli incidents, locomotor task0.10.10.20.1-0.40.3
Time >=10cm from walls, locomotor time 12.22.75.72.4-1.01.2
Bouts of movement, locomotor time 11.01.22.7-1.70.7-0.7
Total resting periods, locomotor time 10.81.01.7-1.30.8-0.7
Rest time, locomotor task time 10.91.52.30.51.4-1.5
Distance moved, locomotor task time 10.51.52.10.8-1.51.3
Vertical activity count, locomotor time 10.10.92.21.5-0.50.4
Time >=10cm from walls, locomotor time 20.10.20.40.00.6-0.4
Bouts of movement, locomotor time 20.10.20.5-0.7-0.10.2
Total resting periods, locomotor time 20.00.10.1-0.4-0.20.2
Rest time, locomotor task time 20.71.23.51.9-0.10.1
Distance moved, locomotor task time 20.60.71.8-1.40.4-0.5
Vertical activity count, locomotor time 21.02.32.4-1.51.5-1.5
Light reinforcement 10.10.50.80.30.9-0.9
Light reinforcement 20.51.21.60.81.3-1.1
Bone: marrow area1.02.45.62.4-0.90.9
Bone: maximum diameter0.10.20.50.10.4-0.7
Bone: maximum force1.63.25.30.2-2.32.1
Bone: maximum moment1.52.84.50.1-2.12.0
Mean time between licks in bursts0.00.20.5-0.7-0.10.3
Mean num. licks in bursts0.10.20.30.3-0.50.5
Cd content in liver0.50.61.51.20.4-0.3
Co content in liver1.82.13.3-0.81.8-1.5
Cu content in liver0.00.00.00.10.10.1
Fe content in liver0.10.10.1-0.4-0.00.3
K content in liver0.50.50.80.0-0.90.9
Mg content in liver0.30.40.80.9-0.40.4
Mn content in liver0.60.71.2-1.1-0.60.7
Na content in liver0.80.91.0-0.81.0-1.0
Rb content in liver1.11.22.71.6-0.80.7
Se content in liver0.40.50.80.9-0.60.6
Sr content in liver1.21.12.7-1.60.5-0.5
Zn content in liver0.30.30.8-0.90.3-0.4
Bone: minimum diameter1.52.84.92.2-1.41.2
Time in familiar zone, hab. session 10.40.40.80.9-0.40.5
Time in novel zone, hab. session 10.10.10.2-0.40.3-0.5
Total zone transitions, hab. session 10.20.20.5-0.4-0.70.3
Total locomotion distance, hab. session 10.20.20.70.8-0.1-0.1
Locomotion velocity, hab. session 10.00.10.10.4-0.1-0.1
Time in familiar zone, hab. session 20.60.71.5-1.20.5-0.5
Time in novel zone, hab. session 21.01.11.31.1-1.11.0
Total zone transitions, hab. session 23.95.07.51.0-2.72.6
Total locomotion distance, hab. session 21.41.82.21.2-1.51.4
Locomotion velocity, hab. session 21.31.71.81.4-1.31.3
Novel to familiar place preference ratio0.30.40.70.4-0.90.6
Novelty place preference0.30.40.60.6-0.80.5
Time in novel zone, NPP test0.40.40.70.6-0.80.5
Total zone transitions, NPP test1.11.62.4-0.0-1.51.6
Total locomotion distance, NPP test0.40.60.80.6-0.70.9
Locomotion velocity, NPP test0.20.30.50.5-0.50.7
Intraocular pressure0.91.52.2-0.41.5-1.5
Delta distance traveled before/after self-admin0.20.20.5-0.30.4-0.7
Delta ambulatory time before/after self-admin0.20.30.5-0.40.4-0.7
Parametrial fat weight0.92.16.32.50.3-0.1
Pavlov. Cond. lever latency0.20.20.30.40.5-0.6
Pavlov. Cond. magazine entry latency0.70.91.10.9-1.00.8
Pavlov. Cond. change in total contacts0.40.40.80.9-0.40.4
Pavlov. Cond. index score0.00.00.00.1-0.0-0.0
Pavlov. Cond. latency score0.10.10.10.2-0.30.3
Pavlov. Cond. lever contacts0.10.10.2-0.1-0.30.4
Pavlov. Cond. magazine entry number0.00.10.1-0.1-0.10.4
Pavlov. Cond. intertrial magazine entries0.50.61.0-0.41.0-0.8
Pavlov. Cond. lever-magazine prob. diff.0.00.00.00.1-0.10.1
Pavlov. Cond. response bias0.10.10.2-0.10.2-0.4
Pavlov. Cond. lever latency0.00.10.10.3-0.10.3
Pavlov. Cond. magazine entry latency2.02.84.8-0.4-2.21.8
Pavlov. Cond. change in total contacts0.30.81.30.5-1.11.0
Pavlov. Cond. index score0.50.81.6-0.1-1.30.9
Pavlov. Cond. latency score0.30.61.1-0.1-1.10.7
Pavlov. Cond. lever contacts0.00.00.0-0.2-0.1-0.2
Pavlov. Cond. magazine entry number2.53.25.30.52.3-2.0
Pavlov. Cond. intertrial magazine entries0.30.71.10.61.0-0.9
Pavlov. Cond. lever-magazine prob. diff.0.71.01.8-0.2-1.41.1
Pavlov. Cond. response bias0.60.81.7-0.1-1.30.9
Time in closed arm before self-admin0.50.92.21.5-0.40.6
Time in closed arm after self-admin0.00.00.10.00.3-0.1
Time in open arm before self-admin0.81.02.2-1.50.5-0.8
Time in open arm after self-admin0.20.20.3-0.5-0.60.4
Bone: periosteal estimation0.00.10.30.5-0.1-0.1
Bone: periosteal perimeter0.40.71.01.0-0.80.7
Bone: post-yield work7.012.113.43.2-3.63.7
Progressive ratio test 1 active lever presses0.10.10.20.40.30.3
Progressive ratio test 1 breakpoint0.00.10.10.30.30.2
Progressive ratio test 1 inactive lever presses0.00.10.20.40.10.4
Progressive ratio test 2 active lever presses0.81.13.21.80.20.2
Progressive ratio test 2 breakpoint0.81.02.81.70.20.1
Progressive ratio test 2 inactive lever presses1.23.810.83.30.6-0.4
Incentive Sensitization - Responses0.41.01.11.0-1.01.0
Incentive Sensitization - Breakpoint0.40.91.11.1-0.90.9
Sum of active levers in priming session hrs 5-64.03.84.4-1.62.1-2.1
Progressive ratio1.85.27.51.2-2.72.6
Food seeking constrained by brief footshock0.10.10.2-0.0-0.40.4
Seeking ratio, punishment vs. effort1.43.14.5-0.82.1-2.0
Retroperitoneal fat weight2.210.019.54.42.3-2.3
Reaction time number correct0.20.71.5-1.20.6-0.6
Reaction time mean minus median0.21.21.9-0.3-1.31.4
Reaction time mean minus median AUC0.10.50.7-0.8-0.60.8
Reaction time num false alarms0.71.21.4-0.91.2-1.1
Reaction time num false alarms AUC0.40.81.5-1.20.7-0.7
Reaction time trials correct on left0.20.71.5-1.20.6-0.6
Reaction time trials on left0.20.81.8-1.30.6-0.6
Reaction time mean0.20.50.70.8-0.80.5
Reaction time mean AUC0.30.71.01.0-0.80.6
Median of all reaction times0.50.81.41.2-0.80.5
Reaction time omissions0.40.60.7-0.9-0.70.8
Reaction time false alarm rate0.20.30.4-0.50.6-0.6
Reaction time premature initiation rate0.81.22.1-1.5-0.81.0
Reaction time premature initiations0.61.85.1-2.3-0.30.5
Std. dev. reaction times0.20.60.80.2-0.90.9
Reaction time trials completed0.20.81.8-1.30.6-0.6
Reaction time trials AUC0.20.61.4-1.20.5-0.5
Run reversals in cocaine runway, females1.01.21.80.2-1.31.3
Run reversals in cocaine runway, males0.90.91.3-0.90.9-1.2
Latency to leave start box in cocaine runway0.91.21.41.2-1.11.0
Latency to leave start box in cocaine runway, F0.70.91.10.8-1.10.9
Latency to leave start box in cocaine runway, M0.10.10.10.2-0.20.3
Std. dev. time between licks in bursts0.91.73.0-1.71.1-0.9
Total sessions with >9 infusions0.40.51.00.5-0.61.0
Short access day 1 total inactive lever presses0.40.82.01.40.5-0.5
Short access day 10 total inactive lever presses0.00.00.00.2-0.20.0
Short access day 1 total infusions0.50.92.81.7-0.10.2
Short access day 10 total infusions1.93.23.81.9-1.51.9
Short access total infusions1.01.41.91.4-0.91.3
Short access day 1 locomotion0.40.71.91.40.00.4
Short access day 10 total locomotion0.21.02.01.4-0.40.9
Short access total locomotion0.71.02.61.6-0.20.7
One hour access (0.3 mA shock)1.82.16.22.50.5-0.2
Compulsive drug intake1.11.74.8-2.20.3-0.4
One hour access (shock baseline)1.23.18.73.00.7-0.4
Social response proportion0.50.60.90.2-0.91.0
Social responses0.20.20.6-0.70.10.3
Social time0.30.40.6-0.7-0.50.8
Soleus weight1.85.37.01.52.6-2.6
Bone: stiffness1.52.74.50.6-2.11.8
Tibialis anterior weight3.411.734.2-5.80.6-0.8
Time to tail flick, vehicle, before self-admin1.01.22.30.6-1.51.0
Time to tail flick, vehicle, after self-admin1.32.74.50.2-1.92.1
Time to tail flick, test, before self-admin2.02.33.41.8-1.31.4
Time to tail flick, test, after self-admin0.20.20.3-0.40.2-0.6
Delta time to tail flick, vehicle, before/after SA0.80.81.8-0.3-0.71.3
Delta time to tail flick, test, before/after SA4.04.96.2-2.51.9-2.2
Tibia length0.82.22.4-1.51.4-1.5
Ambulatory time before self-admin0.20.71.00.5-1.00.9
Ambulatory time after self-admin0.50.81.81.3-0.70.4
Bone: tissue strength0.20.20.30.6-0.40.3
Total heroin consumption1.11.32.8-1.7-0.80.8
Bone: trabecular number2.34.36.31.1-2.52.3
Bone: trabecular spacing0.50.81.5-0.31.2-0.9
Bone: trabecular thickness1.31.82.11.4-1.41.1
Bone: trabecular tissue density2.84.86.81.02.6-2.6
Water consumed over 24 hours0.30.51.1-0.3-1.10.6
Number of responses in last shaping day0.00.00.1-0.10.20.3